mRNA_Ecto-sp13_S_contig2005.6543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2005.6543.1
Unique NamemRNA_Ecto-sp13_S_contig2005.6543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2005.6543.1 vs. uniprot
Match: D7FT97_ECTSI (T5orf172 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT97_ECTSI)

HSP 1 Score: 646 bits (1667), Expect = 2.110e-229
Identity = 338/371 (91.11%), Postives = 347/371 (93.53%), Query Frame = 3 
Query:    6 MGAVDETWTKKELQAECKRRGIAGYSRLNKAALLRALQTGDVITPSATGGGSGGGS---TNTQSKGPADLNVAELREECRRRGLQNVSKLKKDELIRLLKDNRKTSSGSGTTPGEAKPREATLEELRAECRKRGMTGFSHLKKQELIRRMADYESSDNGSKGVKASASVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRAQERFDAGPSPQDTPGFLYIYYESXXXXXXXXDKTREWKIGKTTLDPPERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPSKEKNWDGGGREDGGTEWFRADIDVVEARVKLAIRMVAAREADEADLVGVQPAFCGMFRCGLPIRRRRRHEPKLGTI 1109
            MGAVDETWTKKELQAECKRRGI GYSRLNKA+LLRALQTG V+TPSATG          TNTQSKGPADL VAELREECRRRGLQNVSKLKKDELIRLLKDN+K SS SG TPGEAKPREATLEELRAECRKRGMTG+SHLKKQELIRRMADY+SSDNGSKGVKAS SVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRAQERFDAGPSPQDTPGFLYIY ES XXXXXXXDKT+EWKIGKTTLDPPERRMKQSAHNNRK YTLRASWHVPWCGYVEKIVHLDLDDLKVVP KEK+WDGGGREDGGTEWFRADIDVVEARVKLAIRMVAAREADEAD +GVQPAFCGMFRCGLP+RRRRR EPKLG I
Sbjct:    1 MGAVDETWTKKELQAECKRRGITGYSRLNKASLLRALQTGVVMTPSATGXXXXXXXXXXTNTQSKGPADLTVAELREECRRRGLQNVSKLKKDELIRLLKDNKKPSSSSGNTPGEAKPREATLEELRAECRKRGMTGYSHLKKQELIRRMADYKSSDNGSKGVKASPSVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRAQERFDAGPSPQDTPGFLYIYCESGXXXXXXXDKTKEWKIGKTTLDPPERRMKQSAHNNRKAYTLRASWHVPWCGYVEKIVHLDLDDLKVVPGKEKSWDGGGREDGGTEWFRADIDVVEARVKLAIRMVAAREADEADFLGVQPAFCGMFRCGLPVRRRRRLEPKLGAI 371
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BLAST of mRNA_Ecto-sp13_S_contig2005.6543.1 vs. uniprot
Match: A0A6H5JBR9_9PHAE (T5orf172 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR9_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 3.030e-142
Identity = 212/221 (95.93%), Postives = 217/221 (98.19%), Query Frame = 3 
Query:  444 MADYESSDNGSKGVKASASVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRAQERFDAGPSPQDTPGFLYIYYESXXXXXXXXDKTREWKIGKTTLDPPERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPSKEKNWDGGGREDGGTEWFRADIDVVEARVKLAIRMVAAREADEADLVGVQPAFCGMFRCGLPIRRRRRHEPKLGT 1106
            MADYESSDNGSKGVKASA+VA+GGKATRIRFLGRGGKEKQQQR RMKGPLRSRAQERFDAGPSPQDTPGFLYIY ES XXXXXXXDKTREWKIGKTTLDPPERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVP KEK+WDGGGREDGGTEWFRADI+VVEARVKLAIRMVAAREADEADL+GVQPAFCGMFRCGLPIRRRRRHEPKLGT
Sbjct:    1 MADYESSDNGSKGVKASAAVAQGGKATRIRFLGRGGKEKQQQRVRMKGPLRSRAQERFDAGPSPQDTPGFLYIYCESGXXXXXXXDKTREWKIGKTTLDPPERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPGKEKSWDGGGREDGGTEWFRADIEVVEARVKLAIRMVAAREADEADLLGVQPAFCGMFRCGLPIRRRRRHEPKLGT 221
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BLAST of mRNA_Ecto-sp13_S_contig2005.6543.1 vs. uniprot
Match: A0A6H5J7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.260e-19
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = 3 
Query:    6 MGAVDETWTKKELQAECKRRGIAGYSRLNKAALLRALQTGDVITPSATGGGSGGGSTNTQSKGPADLNVAE 218
            MGAVD+TWTKKELQAECKRRGIAGYSRLNKA+LLRALQTG++                 QSKGPADLNVAE
Sbjct:    1 MGAVDKTWTKKELQAECKRRGIAGYSRLNKASLLRALQTGNI-----------------QSKGPADLNVAE 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2005.6543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT97_ECTSI2.110e-22991.11T5orf172 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBR9_9PHAE3.030e-14295.93T5orf172 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J7I9_9PHAE1.260e-1970.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2005contigEcto-sp13_S_contig2005:2524..5141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1721
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-06_003600.1
Cds size1107
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2005.6543.1prot_Ecto-sp13_S_contig2005.6543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2005 3133..5136 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.7311773-UTR-Ecto-sp13_S_contig2005:2523..31321681463008.7311773-UTR-Ecto-sp13_S_contig2005:2523..3132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2005 2524..3132 -
1681463008.7896647-UTR-Ecto-sp13_S_contig2005:5136..51411681463008.7896647-UTR-Ecto-sp13_S_contig2005:5136..5141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2005 5137..5141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.740554-CDS-Ecto-sp13_S_contig2005:3132..37941681463008.740554-CDS-Ecto-sp13_S_contig2005:3132..3794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 3133..3794 -
1681463008.7491586-CDS-Ecto-sp13_S_contig2005:4063..42161681463008.7491586-CDS-Ecto-sp13_S_contig2005:4063..4216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 4064..4216 -
1681463008.7586124-CDS-Ecto-sp13_S_contig2005:4445..46191681463008.7586124-CDS-Ecto-sp13_S_contig2005:4445..4619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 4446..4619 -
1681463008.771532-CDS-Ecto-sp13_S_contig2005:5018..51361681463008.771532-CDS-Ecto-sp13_S_contig2005:5018..5136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 5019..5136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2005.6543.1

>prot_Ecto-sp13_S_contig2005.6543.1 ID=prot_Ecto-sp13_S_contig2005.6543.1|Name=mRNA_Ecto-sp13_S_contig2005.6543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=369bp
MGAVDETWTKKELQAECKRRGIAGYSRLNKAALLRALQTGDVITPSATGG
GSGGGSTNTQSKGPADLNVAELREECRRRGLQNVSKLKKDELIRLLKDNR
KTSSGSGTTPGEAKPREATLEELRAECRKRGMTGFSHLKKQELIRRMADY
ESSDNGSKGVKASASVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRA
QERFDAGPSPQDTPGFLYIYYESGGGGGGGGDKTREWKIGKTTLDPPERR
MKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPSKEKNWDGG
GREDGGTEWFRADIDVVEARVKLAIRMVAAREADEADLVGVQPAFCGMFR
CGLPIRRRRRHEPKLGTI*
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mRNA from alignment at Ecto-sp13_S_contig2005:2524..5141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2005.6543.1 ID=mRNA_Ecto-sp13_S_contig2005.6543.1|Name=mRNA_Ecto-sp13_S_contig2005.6543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2005:2524..5141- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAATGGGGGCTGTGGACGAGACGTGGACAAAGAAGGAGCTTCAGGCG
GAGTGCAAACGTCGCGGAATTGCAGGGTACTCGCGCTTGAACAAGGCCGC
ACTCCTTCGAGCTCTCCAGACAGGTGGGTGCCAGTAATGTAGCCACAACT
TGACCTGGCGTTGCTTATGATGCGTTGCTTCTGATAATCCTCCTGCGATG
CTATTGGCTGTCGACCTCCAAGATTGCAGAATGTATACGTAGTAGATTGT
CGAGAAGCTGCAGCAGATTCACGGGGTATTGGGGGTCCTGGGTCCTGCCT
GTTTTGCGAATTCGTACATGTAATGCAAATGTATCATCTCCACCATGATT
TACCCTCGCCCATGTTGCGCGCAATTGCTGTGTTCGTCCATGCAAAAAAA
GAAAGATGCAAGCGACAGCGCTGGTGCTCTTGCGACTGCTTGCGTTTCGC
TCACCCGCGTCTACTGCTGTTCATACTGCTAGCTAACGCCACGCCGTGTT
GTCGCGTACGTTGTCAAGCCAGGCGATGTCATCACGCCATCGGCCACCGG
CGGCGGCAGCGGCGGCGGCAGTACAAACACGCAGAGCAAGGGGCCCGCTG
ATCTGAATGTGGCAGAACTACGGGAAGAATGTCGACGGCGGGGGCTGCAG
AACGTCTCCAAGCTTAAAAAAGATGAATTGATCCGGTTGTTGAAAGGCGA
GTGCCCGAACAGAGATTATTTCAGAAGGTTGAAGTAATACATTTGTATGC
AGAAGACATCCGTATGTCGTAGGCCCAGAAAAAAGACGGTGACCAGATAA
GAGCAACTACATTGGCGTGTGTTATGTTTCAAGGGGCTTGTGACCAAAGC
TGCGCGTCTTCCTCGCTGAATCCGTCGGCTTGCCCCCGTCCCCCCCTCAT
GGCGCACTTCTGCCACGTTCTGCAGACAACAGAAAAACTTCTTCCGGCAG
CGGCACTACCCCGGGGGAGGCGAAACCTCGAGAGGCTACGCTTGAGGAGT
TGCGCGCGGAGTGCCGGAAACGCGGAATGACGGGCTTTAGTCATCTCAAG
AAGCAGGAGCTGATTCGAAGGATGGCAGGTAAGACAAAGCGCTAGATAGT
GCAGGTGCAGAGGGCCTGCCGCTTACACTCCGGACACGTTGGGAGTGACT
TTTGCAGCTACACCTTCCGACCGAGCAGATTGCCAAGTTATTGCCCGCCC
GTAGCATCAACCGGAGTGTTTCCCTTGTTCGCGGCACATCGTCTCTGTCT
CATGTCCTCGCGACACCTACCTCTCGTTTCCTGGAAACAAGCACATTGAA
ATCTCTACATCTTGACGGCTCATGACTTCGGAAATGCACGACGGCAGACT
ACGAGTCGTCGGACAACGGCAGCAAGGGAGTCAAGGCATCGGCCTCTGTA
GCCCGAGGAGGAAAGGCGACGCGAATAAGGTTCCTGGGGAGGGGAGGAAA
AGAAAAGCAGCAGCAGCGCGCTCGAATGAAAGGTCCGCTGCGCTCGAGAG
CCCAGGAACGTTTCGACGCCGGTCCTTCTCCCCAAGATACGCCGGGTTTC
CTCTACATTTACTACGAGTCCGGGGGCGGCGGCGGTGGCGGAGGCGATAA
GACAAGAGAGTGGAAAATCGGCAAGACCACTCTAGACCCACCAGAGAGAC
GCATGAAGCAGTCCGCTCACAACAACAGGAAGACTTACACGCTGCGGGCG
TCCTGGCACGTTCCGTGGTGCGGATACGTCGAGAAAATCGTGCACCTCGA
TCTCGACGATCTGAAGGTGGTCCCGAGCAAGGAGAAGAACTGGGACGGTG
GCGGCAGAGAGGACGGGGGGACGGAGTGGTTTCGGGCCGACATTGACGTC
GTCGAGGCCAGGGTGAAGCTCGCGATCCGGATGGTTGCCGCCCGCGAGGC
AGACGAGGCGGACTTAGTGGGAGTGCAACCGGCGTTCTGTGGCATGTTCC
GGTGCGGCCTTCCCATCAGGAGGCGGCGGCGACACGAGCCCAAACTTGGC
ACGATCTGATTTTGAGTTGCACATATGTTTCTTTTCTTTTGAGTAGCTGA
TTAGCTGCTTTGAAGTGAAGACGAAACAAAAAAAGAAAAAAATAGAATGT
ACGACAGCGACGCGTCGCGTGTAAATTGTGGGTTGTGTATATTTCTGTTT
TTCGTACGGGTCGGGCGGCAGACCTTGCACGATACGATTGGTATGTCTGG
GAGCTCTCGTGTTTGGGTAAGTCTGTTTGCATGTCAAGATGTGGAGTCTA
ACCGGAGAAGATCTGGTTGCTAGATATTGTTATCAGGAAAGGTTGCACTC
AAGGAACGGCCGTACTGTTTCAGCACAGCACTCAGTGCTGTGAACTTGGA
GTCGAGTACTTGAGATTTGCGGCTAAACACTGGTCCAAGTTGCACGTTTT
CACTTAACACACCATAGTACAGTCTATCGGTACACGCATATTCGAATAAA
CTCATTCCCTGCCAATGAAGCTTGGCGCCATTCTATCGAATGACTTACCA
TATTAGGCAGGAGGAATCGGACGAGTGTTATTCTAGCAGTTTACGCAGAG
TTTTCTCAGTAGAAGCAAATACTGACTGGATAAAATTAGCATCGGCTAGA
AGTTGGGGCTGGGGTTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2005:2524..5141-

>mRNA_Ecto-sp13_S_contig2005.6543.1 ID=mRNA_Ecto-sp13_S_contig2005.6543.1|Name=mRNA_Ecto-sp13_S_contig2005.6543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2005:2524..5141- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCTGTGGACGAGACGTGGACAAAGAAGGAGCTTCAGGCGGAGTG
CAAACGTCGCGGAATTGCAGGGTACTCGCGCTTGAACAAGGCCGCACTCC
TTCGAGCTCTCCAGACAGGCGATGTCATCACGCCATCGGCCACCGGCGGC
GGCAGCGGCGGCGGCAGTACAAACACGCAGAGCAAGGGGCCCGCTGATCT
GAATGTGGCAGAACTACGGGAAGAATGTCGACGGCGGGGGCTGCAGAACG
TCTCCAAGCTTAAAAAAGATGAATTGATCCGGTTGTTGAAAGACAACAGA
AAAACTTCTTCCGGCAGCGGCACTACCCCGGGGGAGGCGAAACCTCGAGA
GGCTACGCTTGAGGAGTTGCGCGCGGAGTGCCGGAAACGCGGAATGACGG
GCTTTAGTCATCTCAAGAAGCAGGAGCTGATTCGAAGGATGGCAGACTAC
GAGTCGTCGGACAACGGCAGCAAGGGAGTCAAGGCATCGGCCTCTGTAGC
CCGAGGAGGAAAGGCGACGCGAATAAGGTTCCTGGGGAGGGGAGGAAAAG
AAAAGCAGCAGCAGCGCGCTCGAATGAAAGGTCCGCTGCGCTCGAGAGCC
CAGGAACGTTTCGACGCCGGTCCTTCTCCCCAAGATACGCCGGGTTTCCT
CTACATTTACTACGAGTCCGGGGGCGGCGGCGGTGGCGGAGGCGATAAGA
CAAGAGAGTGGAAAATCGGCAAGACCACTCTAGACCCACCAGAGAGACGC
ATGAAGCAGTCCGCTCACAACAACAGGAAGACTTACACGCTGCGGGCGTC
CTGGCACGTTCCGTGGTGCGGATACGTCGAGAAAATCGTGCACCTCGATC
TCGACGATCTGAAGGTGGTCCCGAGCAAGGAGAAGAACTGGGACGGTGGC
GGCAGAGAGGACGGGGGGACGGAGTGGTTTCGGGCCGACATTGACGTCGT
CGAGGCCAGGGTGAAGCTCGCGATCCGGATGGTTGCCGCCCGCGAGGCAG
ACGAGGCGGACTTAGTGGGAGTGCAACCGGCGTTCTGTGGCATGTTCCGG
TGCGGCCTTCCCATCAGGAGGCGGCGGCGACACGAGCCCAAACTTGGCAC
GATCTGA
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