mRNA_Ecto-sp13_S_contig2002.6532.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2002.6532.1
Unique NamemRNA_Ecto-sp13_S_contig2002.6532.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2002.6532.1 vs. uniprot
Match: A0A6H5JS45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS45_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.660e-62
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:  364 MCPSRTRGVSFYSVPHYQENAYHLHNDNFMPTSTNILSTPCLCDGVELSSCNRFEKTNVRTPQVKQKHGSTNPEFLDVFNTLFDHTLHLNNGEHGTNL 657
            MCPSRT+GVSFYSVPHYQENAYHLHNDNFMPTSTNILSTPCLCDGVELSSCNR EKTNVRTPQ+KQKHGSTNPEFLDVFNTLF+HTLHLN G HGTNL
Sbjct:    1 MCPSRTKGVSFYSVPHYQENAYHLHNDNFMPTSTNILSTPCLCDGVELSSCNRIEKTNVRTPQLKQKHGSTNPEFLDVFNTLFNHTLHLNKGAHGTNL 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2002.6532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS45_9PHAE6.660e-6293.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2002contigEcto-sp13_S_contig2002:10110..13763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size658
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_001200.1
Cds size657
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2002.6532.1prot_Ecto-sp13_S_contig2002.6532.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2002 10110..13763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.0862727-CDS-Ecto-sp13_S_contig2002:10109..102441681463008.0862727-CDS-Ecto-sp13_S_contig2002:10109..10244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 10110..10244 +
1681463008.1007836-CDS-Ecto-sp13_S_contig2002:10719..107941681463008.1007836-CDS-Ecto-sp13_S_contig2002:10719..10794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 10720..10794 +
1681463008.1091108-CDS-Ecto-sp13_S_contig2002:11445..115421681463008.1091108-CDS-Ecto-sp13_S_contig2002:11445..11542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 11446..11542 +
1681463008.1172502-CDS-Ecto-sp13_S_contig2002:11962..120321681463008.1172502-CDS-Ecto-sp13_S_contig2002:11962..12032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 11963..12032 +
1681463008.1253574-CDS-Ecto-sp13_S_contig2002:12345..124991681463008.1253574-CDS-Ecto-sp13_S_contig2002:12345..12499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 12346..12499 +
1681463008.1331892-CDS-Ecto-sp13_S_contig2002:13637..137631681463008.1331892-CDS-Ecto-sp13_S_contig2002:13637..13763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2002 13638..13763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2002.6532.1

>prot_Ecto-sp13_S_contig2002.6532.1 ID=prot_Ecto-sp13_S_contig2002.6532.1|Name=mRNA_Ecto-sp13_S_contig2002.6532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MEEIRMKPPYAKPANTEGGSNAGSSDAAGDSIFCQEYLKFGGSSEITQRD
FKCPACPVCEVFDLRNVAVKDNTLHIYAPGAETLKMVHQWGNRLPTLRYF
WGGVQKSGSPIVIHDEPIEETMCPSRTRGVSFYSVPHYQENAYHLHNDNF
MPTSTNILSTPCLCDGVELSSCNRFEKTNVRTPQVKQKHGSTNPEFLDVF
NTLFDHTLHLNNGEHGTNL
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mRNA from alignment at Ecto-sp13_S_contig2002:10110..13763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2002.6532.1 ID=mRNA_Ecto-sp13_S_contig2002.6532.1|Name=mRNA_Ecto-sp13_S_contig2002.6532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2002:10110..13763+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAATCAGGATGAAGCCTCCATACGCCAAGCCAGCAAACACGGA
AGGTGGAAGTAATGCAGGAAGCAGTGATGCTGCAGGCGACAGCATCTTCT
GCCAAGAGTATCTCAAGTTTGGGGGCAGCTCAGAGGTAAACAGGTTCATG
CGTCAGTGGTGACTACTGTAATACGAGTTGCCGACGATCCGTAGACTCTA
TATTCTCAAGTTACCTACAAGTACAAGTGAATCTAGTGCAGTGTTAATTA
GTACCATGCACGTTCGGAGAACCATACCAGGGTGTATCCTGTTGGAGAAT
GAATTTTGTAATGGCCATGGTGCGCTAAGCGGAGAAAACATTTCAAGTCA
TTTCTGATGAAACGACACGACCCTTGTGACATCCGAGTTGAAAGTATTCT
TGCTTCGATTACGCGCATGCTAAATGATCCTCGGGGGACACTACTCGCGC
CAATTACTGGTACCCGAGTTGGTTTGTTGTGGTTCCAACGCAGTGCAGAC
GACAGACATCAAGGCATCACAGCACGTTTCTCTGACAACAAGGCGAACAG
TCCTCGAGGTTAGTTTGTTTATGTTTTTCTCGTGTCTTGCGATGTTTTTC
CCGGCGACAGATCACTCAGCGAGACTTTAAATGTCCAGCATGCCCGGTTT
GCGAAGTCTTCGACCTCAGAAATGTCGCCGTAAAGGTAAGAAACAAGGGG
AAGGATGACGAGAGAAAGTTAGGGGCTACCACTAGCAATGGAGAACCTTC
GCGAAAAAGGGTGCGAAAATGGGTGAAAACGTGATGCTCAATGATCGGTT
GAACCACTAGCGTACCTTTTCCATAGAGGGGCGCAGGCAAGCTGAAAGGT
CTGCATCTCACGTAGTTCGCCGTGGCGCAACGGTTTCGCCTAAATCGTCA
CTCTTGCAGTTTCGGCTTTGTGTGATCATCAAAAATACCGCATCGCCAAA
GGTATTGATTTGTTGAACGTCAGTATATCTAGCACACATTTCACCTGAGT
TTACACTCCTGGTGAGCCGATTGTCCAGCCCCGATTGTCGCCCCACTGGA
CGAATTCAAAAGAGCAGGCCTTGATTCCCTAGCTTCCGATCTCTGCACCC
CTTCACTCTACTGGTCCAACACGCTAGTTAGTGTTCTCACCAGGAAAAGA
CACCCCAACTGCGATCCCCACCTCGTGGGGCTACTACTGGCGTTTCCTGC
AGACGCTTGTTCTTTCGTCAAAAATGCAACCCCTAGAACGTGTCCCTTGG
TCGTTGTCCACTCTCTACTATATCCTTTGCAGCCGTCCACGAGCAAACCA
AACATCGTTCCTTGTCCTGCTGAATTTTTGGACCAGGACAACACCCTTCA
CATCTATGCCCCGGGGGCAGAAACCCTCAAGATGGTTCACCAGTGGGGCA
ACCGGCTCCCCACGCTTCGCTATTTTTGGGGAGGTGCGCCTCTATGTATG
TGGTAGAGCGTACCGCGCGCACCGAAATTTCGGGCCACCGCACTGGACAG
GTCGTGGAAGTTGCACCTGACGTCCTTGTCCGAATTCAGGTCGTACACGT
GAGTCGATCATGGCGATTCCGCTGGACGAACTGGTGGCTTTGTCGTTTGG
TCTTCCTCAAGAAGCATTTGGGCACCTTCCGTCGCGATGGTTGAATCCAG
GAGTTAGAATACCAACCTCATGAGGATCTTCCTGAAGAGCCACATTTGCT
TCCTGGGCATGTTCTCTGTAGCACACGTAGGTCCTGCAAAGACGTTGATG
GCCGCCCTTGAGGGCTTTCACAATGCCCTCCGTCCCGTTTCTTAAAGTTG
TCCATGTTTCGCTGAACGTGAAAATCGTCGATGGGTTTGTGTTTTCCGCA
CAGGGGTGCAAAAAAGTGGAAGCCCAATAGTGATCCACGACGAGCCAATT
GAGGAGACCATGTGCCCTTCGAGGTATGACTGGTGTTGTAGATGTTTTCA
GTCCGTTCTCTTGTGATTATCTCGCGATCTGTTGCTGCTGCTAGTGGTAG
CGGCCGTGGTGGTGGCGGAGGCCGTGGCGGAAGCGGTATTGCTGCCAAAT
GTTGGCGTCGTCACGTCGATGCACGCCACTGTATTTCACATGTGTTGGTT
GAGGTTTCTCTTCGCGTGCAAGCGGTGAGATCTTGCAACGTAGTCAAAAG
ATTCGTCTCACGCTTCACGTCACGGTCGGCGTCTTCCACGCCGTTCAAAC
CCTTGACTTGACGACTTCCACGAAATGTACGAACAGGACAAGAGGGGTTT
CCTTCTACTCGGTGCCGCACTACCAGGAGAACGCGTACCATCTCCACAAC
GATAACTTCATGCCGACCTCCACCAACATCCTATCCACCCCTTGCCTCTG
CGACGGGGTGGAGCTGTCCAGCTGCAACCGTTTCGAAAAGGTGTGCCTTG
GCTGCGGCGGTGAATGTCTTGCCTGATGACGGGTTCAGCTGTCTTCACAT
TTACTATCGTCCATTGTCCTGTTCTCCCCCACTCTTGAACAATGGCGGCC
ACGACTTGGCTCTGTGATGGCGTGCAGCTGCCTAGCTGTACCAATCAATG
AACGCACACGATATTCGTGAACTAGAAATAGCACAGCTGAGTCTTTCAAC
TATGTGCTGGCTTGATGTGTGACTCGACAACGGGTTTCTTCTTTTGATTT
GCCGGACGGACATGGGCTCGCCAGAGAGACGTACTATTCGGAGAGAAGTA
TTGCGAAGTCTGAACTTGGCAGAGGAAAGAAAGTACCTTGCTTGGTTGTC
ACGTCTTCGTATTCGTGCAACATTATGAGATCAAGGTCGTGAGTACCGTG
CCAGCCATTCTCTTCCTCGGCCGCAATACATTCACAAATGTTGAAACAAC
GAGCTAAGAAACTCTCTGGAAAACGTGCGTTGGCATGCGAAAAAAAGTGC
TTGGAACATGTGTCAGCTCGCTTCACACCCGAACCACACATCACAAACTG
CACCATCTCCAGCGACGTTTGTGAAGCGACTGAAACAGAGTACACGAAAG
CATCTGAGTACAGCAAGGCCAACTCACGACGGCCAACACAGCCAGCCGTC
GGGGCAGAAACAAGGACGAGGACGACGACAAGCTTACCATGTAGTTGCAT
AAAGAACATCCTCAATTACAATGCACAGGGTTGTTTGTGTCTCTCCGCGG
TGTAGGAACGGAGAAACGTCTCGAAAACTGATACACGATAGATGGTCGAG
TGACCCTGGAAAGAAAGCATCAAGCAAAAGCGTTCCCACACAGTCCCGTA
TCCGATGAGAACATGATTGTTTGATTGGAGGGAACACATGATTGCTTTTG
TATGTGTTCGGTAAATATGGCGCAGGCTAATCATGTCTTGAGGTCTGATG
ATCACGTGGAAGGCTTTGGGAACATGTTGCGAAGCGTAAAGTTTTGGAGG
TGGAACGCGTATACTTTACAGCTTAAGTGATTGGGGCACGTGGTCGATGA
TCAAAAGGATGCCGCAAAGAACATGGGAGCCTTAACACATAGTCGTTCGC
CTCCGCTTGATTGCCTCTTTTCTCGCAGACCAATGTGCGCACTCCGCAGG
TGAAGCAAAAGCACGGCAGCACCAATCCAGAGTTTCTGGATGTTTTCAAC
ACGTTGTTCGACCACACGTTGCATCTCAACAACGGCGAGCACGGTACCAA
CCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2002:10110..13763+

>mRNA_Ecto-sp13_S_contig2002.6532.1 ID=mRNA_Ecto-sp13_S_contig2002.6532.1|Name=mRNA_Ecto-sp13_S_contig2002.6532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2002:10110..13763+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAATCAGGATGAAGCCTCCATACGCCAAGCCAGCAAACACGGA
AGGTGGAAGTAATGCAGGAAGCAGTGATGCTGCAGGCGACAGCATCTTCT
GCCAAGAGTATCTCAAGTTTGGGGGCAGCTCAGAGATCACTCAGCGAGAC
TTTAAATGTCCAGCATGCCCGGTTTGCGAAGTCTTCGACCTCAGAAATGT
CGCCGTAAAGGACAACACCCTTCACATCTATGCCCCGGGGGCAGAAACCC
TCAAGATGGTTCACCAGTGGGGCAACCGGCTCCCCACGCTTCGCTATTTT
TGGGGAGGGGTGCAAAAAAGTGGAAGCCCAATAGTGATCCACGACGAGCC
AATTGAGGAGACCATGTGCCCTTCGAGGACAAGAGGGGTTTCCTTCTACT
CGGTGCCGCACTACCAGGAGAACGCGTACCATCTCCACAACGATAACTTC
ATGCCGACCTCCACCAACATCCTATCCACCCCTTGCCTCTGCGACGGGGT
GGAGCTGTCCAGCTGCAACCGTTTCGAAAAGACCAATGTGCGCACTCCGC
AGGTGAAGCAAAAGCACGGCAGCACCAATCCAGAGTTTCTGGATGTTTTC
AACACGTTGTTCGACCACACGTTGCATCTCAACAACGGCGAGCACGGTAC
CAACCTC
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