mRNA_Ecto-sp13_S_contig2000.6522.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2000.6522.1
Unique NamemRNA_Ecto-sp13_S_contig2000.6522.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.920e-27
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVLRL 241
            MAS DR+ALVALF  TGGAGWTRRDNW+TDAD  TW GV VNDQGRVV +DL  NNLQG  PKE G+L+KL  L L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.480e-27
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVL 235
            M STDREALV+LFR TGGAGW RRDNWDTDADL TW+GV VN QGRVV LDL  NNLQG  P E G L+ LR L
Sbjct:    1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 8.250e-27
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSL 217
            M+STDREAL+ALFR TGGAGW RRDNWDTDA L TWHGV VNDQGRVV+L L  NNLQGH P++ G L
Sbjct:    1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.000e-25
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 2 
Query:   11 AMASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVL 235
            AM+STDREAL+ALFR TGGAGW RRDNWDTDA L TW GV VNDQGRVV L L  NNLQG  P + G+LS L  L
Sbjct:   18 AMSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTAL 92
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.020e-24
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVLRLNNNELSG 262
            MA TDR+ALV L+R TGG  W  R NWDTDADL TWHGV VNDQGRVV L L DNNL+G  P   G L  L+ L L++N+LSG
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSG 83
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.580e-24
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVL 235
            MASTDREAL+ALFR TGGAGW RRD WDTDA L TW G  VNDQGRVV L LS NNLQG+ P EPG L +L+ L
Sbjct:    1 MASTDREALIALFRSTGGAGWKRRDKWDTDAVLATWDGAEVNDQGRVVGLHLSSNNLQGNIPPEPGDLRQLQRL 74
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.230e-23
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVL 235
            MASTDREALVALFR TGGAGW +R NWDTDA + TWHGV VN QGRVV L L  N+L+GH P E G+LS+L+ L
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.600e-22
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLR 229
            MA TDR+ALVAL+R TGG  W    NWDTDADL TWHGV VNDQGRVV L L DNNL+G  P   G L+ L+
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQ 72
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BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.070e-21
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 2 
Query:   14 MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVLRL 241
            MASTDREAL A+FR TGGAGW RR NWDTDA L TW GV VN+QGRVV LDL  NNLQG  P E G L+ L  L L
Sbjct:    1 MASTDREALSAVFRLTGGAGWRRRRNWDTDAALETWEGVKVNNQGRVVTLDLPGNNLQGTIPVELGKLTALEALIL 76
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.110e-19
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:   11 AMASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVILDLSDNNLQGHFPKEPGSLSKLRVLRLNNNELSGEE 268
            AM+S DR ALVALFR TGG  W    NW TDADL  WHGV VN  GRVV LDL++NNL+G  P+    L +L VL L+ N+L+GE+
Sbjct:   33 AMSSEDRAALVALFRSTGGTRWILNANWATDADLSKWHGVEVNQHGRVVELDLNNNNLRGTIPETLRGLKELMVLNLSCNKLTGEK 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2000.6522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQQ0_9PHAE2.920e-2772.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQP2_9PHAE5.480e-2774.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI0_ECTSI8.250e-2776.47Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L6T0_9PHAE3.000e-2572.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY3_ECTSI5.020e-2463.86Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LF46_ECTSI7.580e-2472.97LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FX56_ECTSI8.230e-2370.27LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JK91_9PHAE2.600e-2265.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD4_ECTSI1.070e-2169.74Putative leucine rich repeat protein n=1 Tax=Ectoc... [more]
D7FH89_ECTSI1.110e-1958.14Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2000contigEcto-sp13_S_contig2000:12207..15027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score113.2
Seed ortholog evalue6.3e-23
Seed eggNOG ortholog2880.D8LBY3
Model size971
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2000.6522.1prot_Ecto-sp13_S_contig2000.6522.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2000 12220..13024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.4636512-UTR-Ecto-sp13_S_contig2000:12206..122191681463007.4636512-UTR-Ecto-sp13_S_contig2000:12206..12219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2000 12207..12219 +
1681463007.49916-UTR-Ecto-sp13_S_contig2000:13024..134491681463007.49916-UTR-Ecto-sp13_S_contig2000:13024..13449Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2000 13025..13449 +
1681463007.5103605-UTR-Ecto-sp13_S_contig2000:13830..139021681463007.5103605-UTR-Ecto-sp13_S_contig2000:13830..13902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2000 13831..13902 +
1681463007.5212724-UTR-Ecto-sp13_S_contig2000:14210..142821681463007.5212724-UTR-Ecto-sp13_S_contig2000:14210..14282Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2000 14211..14282 +
1681463007.5363188-UTR-Ecto-sp13_S_contig2000:14914..150271681463007.5363188-UTR-Ecto-sp13_S_contig2000:14914..15027Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2000 14915..15027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.4748924-CDS-Ecto-sp13_S_contig2000:12219..123941681463007.4748924-CDS-Ecto-sp13_S_contig2000:12219..12394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2000 12220..12394 +
1681463007.48629-CDS-Ecto-sp13_S_contig2000:12923..130241681463007.48629-CDS-Ecto-sp13_S_contig2000:12923..13024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2000 12924..13024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2000.6522.1

>prot_Ecto-sp13_S_contig2000.6522.1 ID=prot_Ecto-sp13_S_contig2000.6522.1|Name=mRNA_Ecto-sp13_S_contig2000.6522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MASTDREALVALFRWTGGAGWTRRDNWDTDADLVTWHGVTVNDQGRVVIL
DLSDNNLQGHFPKEPGSLSKLRVLRLNNNELSGEECNHFLK*
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mRNA from alignment at Ecto-sp13_S_contig2000:12207..15027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2000.6522.1 ID=mRNA_Ecto-sp13_S_contig2000.6522.1|Name=mRNA_Ecto-sp13_S_contig2000.6522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2000:12207..15027+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCCCTGAGCAATGGCTTCGACGGACCGTGAAGCACTGGTTGCCCTGT
TTCGTTGGACCGGTGGGGCTGGATGGACCCGAAGAGACAACTGGGACACA
GATGCTGACCTGGTGACATGGCATGGAGTTACAGTAAACGACCAGGGCCG
AGTGGTCATCCTCGACCTGAGCGACAACAACCTCCAAGGTGTAGCTCTTC
GCCATAATATGGTGCTTACACGTCCTTCCGTCTCGAGAAAAATGTGCTTG
ACCATTCCTACGGATTCGTGGAGTAAGATGCTTGATCAACGCTTGCGGCT
TCGAGAACAAATGTACTGCCTTTGCAGAAAACGAGTATTGCATTCATAAA
TCCCGCTCACGTGTGGGCGGAACACGATCTACGGAGATCGATGCTGTACA
TGTTCTAGAGTCCGCAGGAGAAACGTTCTGAACTCTCTAAGGTTTGACTT
TTGCGTGCGCTGCACCCCTGAGCTGGGGAACCTTGGTGCCCTGAAAACCC
TCCATCTGGGGATGAATGAGCTGACAGGTGAGACAAAATCGGACAAAATT
GAACACTCTGTTCTTATTTTTCTACAACAAGACGGTCTCCGTAGATGCTG
TACAGCCAACGCGTGCGCGGGACAAATGTTCTAGAAAGGGAGTGAAATTG
TGTTATAGAAATGTGCAATCTTCGTGATGCGACATTTTTTATATTTTCTG
CTGTTGAACTTGAACAGGACACTTCCCCAAGGAGCCAGGGTCCCTTAGCA
AGCTGCGGGTGCTTAGGCTCAACAACAACGAGCTTTCTGGTGAGGAGTGC
AACCATTTTTTAAAATAATTTTGTTGGTCTAGAATTCGTCATTCTCTCTT
GTAGGCCATGTGCCCCTCCAATGCGGACGCGGGACATATGTTCTAGGCCC
GGACAGTACCCCGTTTAATGTTTTGCGCTGTTCTTGTGGTGCAGGAGCGA
TTCCCGAGGAGCTGGGAGCTCTCACCAACCTGGAGAAGCTTTTACTATCC
AACAACGAGATTGCCGGTAGAGTGGCGTGAAACTTCCATTGTGTGTTCCC
CTGCTTGTAGAAATTTGCTTAGCTGTGTTCTATAAGGCTACTATTCGATT
AGGCGGGATTGATCTAGAGATTTGATGATTTTTGTCACTTTTGGTATGTT
TCGCTTTGCTGCTTTGGGCAGGCCCGATACCAAGGGAGCTGGGGGGACTC
ACCGACCTGAAGGTGCTAGGGCTGAGCAACAACAAGCTTACAGGTAAATC
GGCAAGTACTGCACTTTTATTTTGTTTGTTGGACTTCCAGGACGGCACGA
ATCCCACCCAGGCGTTGGTAAGTAGCCTCCTAGAATGTTGTTGAAAAACA
AAATTTGCTTTCCCTCACCGGTTAGCTTGTTGAAAAAGATTGACAGACGC
TCCAGCTTGCTGAGAGCTCCCAGCGCCGCGTGAATAGATTCTTCGAGGGG
TGCACAGCGGGGTGAAGGAAGTTGGTTTGAAAACCCCGGCTTCGAAGCCA
CTACTCACCCACGCGTGGGCGAGACAAGGTCACGCAGATCGATGCTCAAG
AAATCAATACATAATTGTTCAACGACATCACCAACGAACCAAACGACCCG
CACCACCCCGCATATACCATGCAGGCGAAATTCCGGCGTCCCTAGGACAG
CTCGTCCAGCTGGAAAAGCTCTACCTCTACCTAAACAAACTCAGCGGTAA
GTGCCTCTGTTCGGCGTATACACGTCACACCAGATTGCTTGAATCCCGCG
TATGGCGCAAGGCGACAAAAAACTATGAACATTGTGTTTGGAGGATCTTC
TAGAACAACGGTCCTGCCGATGTCATGAACTGATCAAAATGTTGTTCCGG
TTTTTAGAATAGCTACTCACCCACTAGTTGGGTGAGTAGACGGAGAAACT
TCATCAATTTTCTTATTTTCTCGAAAGTAGGCGAGTTGGTGTAGAAGCCG
GGGATACATTCTGGTGAGTTGTCTGTCAAGTTCATATTTGTCTCACGTTT
TCAGGTCCTATCCCCCCGGAGCTAGGGAAGCTTGGGGCCCTTCAGCAATT
GGTCCTATGGGGCAACAAACTGAGTGGTAAGTATATCGTCGGATTCCATA
GAACGTGTCCTGCGCACGCATTGGCAGGACATATGTTGTAGGAGCAGCTG
TCTCATAGATCGGGAGCAAACATGCGGTAGTTCTTGCCCCGATCACGCAC
CGTGATGCTGGTTGTATTGCAGCCGAAGCTCCGTCAGCTTGGATAGGGCT
CCCAGCTTCTTCGATATTGACCCTTTACAAAGCAGAACAGATGCCAACAA
GTTAGGATAGAGCATTATTTTCTATCATCTGCACGAGGCAGGACATATGT
TCCAGAGGCGGAAACGGCCCAATGTGTAGAGGAGAACCATATCCAGTATC
TCTTATCCGTAAGGTTGTTGTACAACCTAAGCTCCTTCAGCTCAGCGAGG
TCCCCCACCTCCTTTGGTATCGACCCTGCCTGGACCAGCACATGGTACAG
ATTCTAGATACCGGTCCCGCCCACGCATCGGCGGGAAACATGTTCTAGAA
GCTTCGCACTTCGGTCATTCATATTGTACGGGTGCATGACATGGTCACCA
CTCAGCGGCCACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCT
TCGAGTTATCGGGTACAAGCGCAAGAAAGACACCAACCGGCAGCTCTCTT
ACGCCCAGACGCTCAAGAGGGTCGAATGCCAGAGCGTTGAAGCCACGATC
CGACAACGACGCCTACTGTTCGCGGGAGCATTGGCAAGGCAGCCGGACGG
GCGACTCCCGAAACGACTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2000:12207..15027+

>mRNA_Ecto-sp13_S_contig2000.6522.1 ID=mRNA_Ecto-sp13_S_contig2000.6522.1|Name=mRNA_Ecto-sp13_S_contig2000.6522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2000:12207..15027+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGACGGACCGTGAAGCACTGGTTGCCCTGTTTCGTTGGACCGG
TGGGGCTGGATGGACCCGAAGAGACAACTGGGACACAGATGCTGACCTGG
TGACATGGCATGGAGTTACAGTAAACGACCAGGGCCGAGTGGTCATCCTC
GACCTGAGCGACAACAACCTCCAAGGACACTTCCCCAAGGAGCCAGGGTC
CCTTAGCAAGCTGCGGGTGCTTAGGCTCAACAACAACGAGCTTTCTGGTG
AGGAGTGCAACCATTTTTTAAAATAA
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