mRNA_Ecto-sp13_S_contig200.6519.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig200.6519.1
Unique NamemRNA_Ecto-sp13_S_contig200.6519.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: D8LK51_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK51_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 2.710e-151
Identity = 215/223 (96.41%), Postives = 216/223 (96.86%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKILGTDQAGTSSLSPTGTRELKVSTAATIGAGEGSTETDRAQEHSDR 669
            KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLR+KILGTDQA  SSL PTGTRELKVSTAAT GAGEGSTE DR QEHS R
Sbjct:   13 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLREKILGTDQAAKSSLPPTGTRELKVSTAATTGAGEGSTEADRTQEHSGR 235          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7S2V268_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V268_9STRA)

HSP 1 Score: 266 bits (679), Expect = 4.320e-83
Identity = 119/183 (65.03%), Postives = 147/183 (80.33%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKILGTDQ 549
            +DY+LTIEYKHLKQ+APGGVFVIPS   LR+W+GVIFVRRGHY+ G+FKFRV+LP +YN   TWP + FTS VFNP+V P TGELDL+S +PEW P +HYMVT LT+LKK+FYMK F  P PANP AQ LF  +K  FLE V  CVRES+E +++N+ GSSL+F+EPKPAH+ LRK I  +++
Sbjct:   41 RDYKLTIEYKHLKQHAPGGVFVIPSFESLRVWWGVIFVRRGHYSKGIFKFRVDLPDEYNGPNTWPKVTFTSRVFNPLVFPQTGELDLKSAYPEWNPERHYMVTVLTFLKKIFYMKSFDGPNPANPVAQNLFHSNKVEFLEEVNNCVRESKENIFKNDPGSSLKFSEPKPAHESLRKSIFESEE 223          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A836CDQ7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ7_9STRA)

HSP 1 Score: 234 bits (596), Expect = 3.180e-71
Identity = 108/181 (59.67%), Postives = 135/181 (74.59%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLP-GKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKILG 540
            KDY++ +EYKHL Q+APGGV+V P ++ LRIW+GVIFVRRG YANG+FKF VELP +Y DAG WP + F S+VFNP+V P  GELDLR + P W P G   M+  +TY+KK+FY KDF+   P NPEAQ +F+D+K GF ER  ACV ES    YE+  GSSL+FTEP+PAHD +  +ILG
Sbjct:   27 KDYKIAVEYKHLWQHAPGGVYVTPDLDDLRIWHGVIFVRRGMYANGMFKFSVELPQNYGDAGAWPRLVFMSTVFNPLVKPSNGELDLRLMMPGWNPAGGDCMLKVITYMKKIFYTKDFALAAPPNPEAQRMFRDNKSGFAERAAACVEESLSRRYESPPGSSLKFTEPRPAHDSVAARILG 207          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7S2R8I5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8I5_9STRA)

HSP 1 Score: 218 bits (556), Expect = 6.260e-65
Identity = 102/185 (55.14%), Postives = 133/185 (71.89%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFS---FPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKILGTD 546
            KD +LTIEYKHLKQN+PGGV V+PS   LRIW GVIFVR+G Y +G+FKF + +P +YND   WP +RF S V NP V+P TG LDLRS FP+W P  H+MV+ LT+LKK+FY+KD     + +PANPEA  +F  D+  + +RVE  V  SQ TVYEN   S L F++P+ AHD++R+ +L T+
Sbjct:   51 KDLKLTIEYKHLKQNSPGGVLVVPSFEDLRIWNGVIFVRKGLYQDGIFKFVITIPAEYNDRNVWPEVRFVSEVVNPYVNPQTGILDLRSNFPQWDPNSHFMVSVLTFLKKIFYLKDSDVADYRKPANPEALRMFMRDRAQYRQRVEELVATSQSTVYENPHESPLAFSQPQAAHDQVRQTLLETE 235          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7R9W3Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3Q1_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.700e-64
Identity = 97/175 (55.43%), Postives = 134/175 (76.57%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLR 525
            +DY++TIEYKHLKQ+APGGV++IPS++ LR+++GVIFVRRG + NG+FKFRV+LPP YND   WP I F+S V+NP V+P TGELD+++ +P W P +HY+VT LTYLKK+FYMK F     ANP+A+ L + +   + ++VEACVRESQ +V+ NE   + +F+E +  H  LR
Sbjct:   56 RDYKVTIEYKHLKQHAPGGVYLIPSLDDLRVFHGVIFVRRGPFTNGIFKFRVKLPPRYNDVNAWPQIVFSSYVYNPHVNPETGELDVQAAYPTWDPHRHYLVTVLTYLKKIFYMKGFGEEARANPDARDLARSNPPAYRKKVEACVRESQRSVFVNEPDCTAKFSEDEVCHQVLR 230          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7S1ZU80_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZU80_TRICV)

HSP 1 Score: 216 bits (550), Expect = 4.470e-64
Identity = 101/176 (57.39%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRP-ANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLR 525
            +DY++TIEYKHLKQ+APGGV+++PS+  LR+++GV+FVRRG + NGVFKFRV LPP YND    P I F S V+NP V P TGELD++  +P W P +HY+VT LTYLKK+FYMK F    P ANPEA+ L + D + +  RVEACVRESQ +V+ NEEG +  F E +  H  LR
Sbjct:   37 RDYKVTIEYKHLKQHAPGGVYLVPSLTDLRLFHGVVFVRRGPFTNGVFKFRVSLPPRYNDFNAHPSIHFGSYVYNPHVDPETGELDVKGAYPTWDPHRHYLVTVLTYLKKIFYMKTFGTDEPVANPEARELVRRDPKEYRRRVEACVRESQRSVFVNEEGCTAEFHEDRVCHQILR 212          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7S1VY26_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VY26_9STRA)

HSP 1 Score: 213 bits (543), Expect = 4.490e-63
Identity = 96/175 (54.86%), Postives = 132/175 (75.43%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLR 525
            +DY++TIEYKHL+Q+APGGV++IPS+  LR +YGVIFVRRG + NG+FKF+++LPP YND  TWP I FTS+VFNP V P TGELD++S +P W P +HY+VT LT+LKK+FY+K F     AN EA+ L + +   +  +V+ CVR+SQ+ V+ NE+G + +FTE   +H  LR
Sbjct:   48 RDYKVTIEYKHLRQHAPGGVYLIPSLTDLRHFYGVIFVRRGPFTNGIFKFQLKLPPTYNDLNTWPTITFTSNVFNPHVHPKTGELDVKSAYPRWDPHRHYLVTILTFLKKIFYVKTFGPDAKANKEAKKLAEKEPAAYRLKVDECVRDSQKDVFVNEDGCTAKFTEETLSHRVLR 222          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A7S4APQ2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APQ2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.480e-62
Identity = 97/175 (55.43%), Postives = 133/175 (76.00%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLR 525
            +DY++TIEYKHLK +APGGV++IPS++ LR ++G+IFVRRG + NG+FKFR+ LPP YND   WP I F+  VFNP V+  +GELD++S +P W P +HY+VT LTYLKK+FY K+F+  R AN  A+ L + D + + ++VE CV ESQ++VY NE+GS+ +FTE K AH  LR
Sbjct:   27 RDYKVTIEYKHLKSHAPGGVYLIPSMDSLRHFHGIIFVRRGPFTNGIFKFRLSLPPKYNDTNMWPRIIFSGHVFNPYVNEESGELDVQSAYPTWDPSRHYLVTVLTYLKKIFYAKNFADAR-ANTVAKELAETDPQAYKKKVEECVHESQKSVYVNEKGSTAQFTEEKVAHRVLR 200          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: A0A024G8I5_9STRA (UBC core domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I5_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.950e-62
Identity = 97/180 (53.89%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFS--FPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKI 534
            KDY L IEYKHL+Q+ P G++V+PS ++ RIWYG IF+ +G Y NG+FKF +E+P DYN  GT+P I F+SS+F+P VSP T +LDL++ FPEW P  HYMV ALT+LK +FYMK+F       ANP A  LF D+   ++  VE CV  S E+V+++E  SS+RFT P PAH+ LRK+ 
Sbjct:   41 KDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWYGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSIVFSSSIFHPYVSPQTRKLDLKAKFPEWDPELHYMVAALTFLKSIFYMKEFPEILDNVANPNALKLFHDELETYVTNVERCVSGSLESVFDDEPNSSIRFTRPIPAHENLRKEF 220          
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Match: F0W1H7_9STRA (Uncharacterized protein AlNc14C7G945 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1H7_9STRA)

HSP 1 Score: 211 bits (536), Expect = 5.430e-62
Identity = 96/180 (53.33%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 KDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDF--SFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRKKI 534
            KDY L IEYKHL+Q+ P G++V+PS ++ RIW+G IF+ +G Y NG+FKF +E+P DYN  GT+P I F+++VF+P VSP T +LDL++ FPEW P  HYMV ALT+LK +FYMK+F  +    ANP A  LF D+   ++  VE CV  S E VYE++  SS+RFT P PAH+ LRK+ 
Sbjct:   41 KDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWFGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSITFSTAVFHPYVSPQTRKLDLKAKFPEWDPELHYMVAALTFLKSIFYMKEFPETINNVANPNALKLFHDELETYVTNVERCVSGSLENVYEDDSSSSIRFTRPTPAHENLRKEF 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig200.6519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK51_ECTSI2.710e-15196.41UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2V268_9STRA4.320e-8365.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CDQ7_9STRA3.180e-7159.67Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2R8I5_9STRA6.260e-6555.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9W3Q1_9STRA2.700e-6455.43Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1ZU80_TRICV4.470e-6457.39Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1VY26_9STRA4.490e-6354.86Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4APQ2_9STRA2.480e-6255.43Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A024G8I5_9STRA4.950e-6253.89UBC core domain-containing protein n=1 Tax=Albugo ... [more]
F0W1H7_9STRA5.430e-6253.33Uncharacterized protein AlNc14C7G945 n=1 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig200contigEcto-sp13_S_contig200:19682..21933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score280.8
Seed ortholog evalue3.7e-73
Seed eggNOG ortholog2880.D8LK51
Preferred nameAKTIP
Model size1354
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010256,GO:0010498,GO:0010562,GO:0010604,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031371,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0042325,GO:0042327,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045022,GO:0045937,GO:0046483,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070695,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080171,GO:0090304,GO:0098927,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.sperm individualization
EggNOG OGsKOG0429@1,KOG0429@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-06_008200.1
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig200.6519.1prot_Ecto-sp13_S_contig200.6519.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig200 20161..21251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.1568377-UTR-Ecto-sp13_S_contig200:19681..198331681463007.1568377-UTR-Ecto-sp13_S_contig200:19681..19833Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig200 19682..19833 +
1681463007.1799424-UTR-Ecto-sp13_S_contig200:20084..201601681463007.1799424-UTR-Ecto-sp13_S_contig200:20084..20160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig200 20085..20160 +
1681463007.22042-UTR-Ecto-sp13_S_contig200:21251..219331681463007.22042-UTR-Ecto-sp13_S_contig200:21251..21933Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig200 21252..21933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.189861-CDS-Ecto-sp13_S_contig200:20160..203281681463007.189861-CDS-Ecto-sp13_S_contig200:20160..20328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 20161..20328 +
1681463007.2002983-CDS-Ecto-sp13_S_contig200:20571..206881681463007.2002983-CDS-Ecto-sp13_S_contig200:20571..20688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 20572..20688 +
1681463007.2103875-CDS-Ecto-sp13_S_contig200:21092..212511681463007.2103875-CDS-Ecto-sp13_S_contig200:21092..21251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 21093..21251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig200.6519.1

>prot_Ecto-sp13_S_contig200.6519.1 ID=prot_Ecto-sp13_S_contig200.6519.1|Name=mRNA_Ecto-sp13_S_contig200.6519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPE
AQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLRK
KILGTDQAGTSSLSPTGTRELKVSTAATIGAGEGSTETDRAQEHSDR*
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mRNA from alignment at Ecto-sp13_S_contig200:19682..21933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig200.6519.1 ID=mRNA_Ecto-sp13_S_contig200.6519.1|Name=mRNA_Ecto-sp13_S_contig200.6519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:19682..21933+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGACTATCGTCTGACGATCGAGTATAAGCACTTAAAGCAGAATGCGCC AGGCGGAGTGTTCGTTATCCCGAGCGTCAACCACCTCCGCATCTGGTACG GAGTGATTTTCGTGCGCCGAGGTCACTATGCCAACGGGGTCTTCAAGTTC AGGTGTGCGACACTATGAGAACGTTACAACTACTGTAGGCCCTGTTCTTT GTGCAGCCGAGGAAGGGGCTTATGTTTCAATAGCAAGATCATATTGTTTC CGGCAAAATTCATGATCTGGACAGTATACTAGCGCCACTGTTGAAATAGA CGTGCAGTAGAGCAAACAATGGGAACCAAGGAGACTTCATACTTGTACCC CGCTCAGCATCGCCTCCCCGACTCGTTTTCTTGGCTGCGCTACACACCAC CAGGGTCGAGTTACCTCCGGATTACAATGATGCCGGCACGTGGCCAATCA TCCGCTTCACGAGCTCGGTGTTCAACCCGATGGTGTCACCGATAACTGGA GAGCTAGACCTCAGGTCTGTGTTTCCAGAGTGGTTACCCGGGAAACACTA CATGGTGACGGCCCTCACGTACCTCAAGAAGGTTTTTTACATGAAGGACT TCTCCTTCCCTCGACCAGCCAACCCAGAGGCACAAGCACTGTTCCAGGTG ACCAGTGTTGACTCAACCCTCTTTTGGAAGCTCTCATGATAAGCCTCGCG CTTGCTCTACGTATCACGACCCCTCTACATTCTGTTGAACACACACGAGG GAGCTGGCCATCTCCTCCTTTTTTTTGCGTCTGTGTCGGCCTTTTGTTTG TCCTCGAGGATATCATTTGCTTTAGATACTATGTGGAAACTTGTAGAGCA CGTGCTAATATCGACCCTCTGGTGTGCGCTAATTCTGTAGGATGACAAGC GGGGATTCCTCGAAAGAGTCGAAGCGTGCGTGCGCGAGAGTCAGGAGACT GTGTACGAGAACGAGGAAGGGTCCAGCTTGCGCTTCACGGAGCCCAAACC AGCACATGTAGGAGAAGTTGTTACACATCTCGGTTGACGAGGGGAGGGCG GGGGGGTGGTTGCTCTGTCGCCCACTCCAAACGTTGACTATATAGACCAC ATGGAGGAAACGCCATGTATAAAACGCCGCGTTTGCGCTTCTTTCAACGT ACCTTCACGGAAACGTTTGTGTCATGGGCGAATGATAGCACCATCCAAGT TGATTCCCAAGAATACAGAACGTATCTTACACGCACATACGGCAACCTCT GATACTCCGCTGCTGGCCGTCTGGTGGAGTCAGGTGGCAATCCAACCGTT GATGATTCACTTCTCTCGTGTGCACAGGCCGCCTCTTGAGCACATCGTGC GGAGACCTGCTCATGCGCTCAGAAGTTGAGTTTGTTGTGCATTCCACTGC ATGTTGCACAGGACAAGCTTCGGAAAAAGATTTTGGGTACAGATCAGGCA GGGACGTCGTCCCTGTCGCCTACAGGCACAAGAGAGCTGAAAGTCAGCAC GGCAGCAACAATCGGTGCTGGAGAAGGATCAACTGAGACCGATAGAGCGC AAGAACATTCTGATCGATGACGTGGGTCGATCTAGACCGCTGCAACAGGG AAAGCCGGTGGCCACGGTAGTAGAAAGTGTCAAAGCGGACCCGATTCCCA GGGTATCCGTCGATTGACTTTTTCCAGAATCAGTACACATTCTCACCATC GGTTATCGTAACGTCTTGGGCTCTTTATAGTTAGACCGACAAGTTGTTTG TTGATCATGTTGCCACTACCTGCATGTGCGGTGTTCGTGTGTGGCTGTTT GTAGAGTATGGTGGTATTCCATCACGTTTTTAGCCTCAAAGCGAGGTTGT TGACATCCATGTCTTCAGCAATAGCAGCAAGTAGGTTTGTCTTTTGTTAT AATCAGATTGCAGTGTCTGTGTTGTCTACTACTGTCGCAGTTCACTGCTG CTTGAAGACAGGCTTGAAAAACGGTTAGTTCGTAAGACTTTCAAAATCAC CGTCGACAAGGGAATGGGACGGCTGAACCCCTTTTCGTTGTGAAAAGAAT GTGTAAAAAAATATCTGTTCGTGGTGTGGCCCCGACTGACGTTGCTTCGT ACATGTAAGCACACGGTGTACAAGACTGGCATCTGGAAGGAACGGGACGA AGACGCATACGCCAAAAGTACAGAGCGTACGCAGAGTACATCCGTCGACA TCAAATATTCGCCGTCCTGACAGGAGGAGAGACAACGGACGCAACAACGG CC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig200:19682..21933+

>mRNA_Ecto-sp13_S_contig200.6519.1 ID=mRNA_Ecto-sp13_S_contig200.6519.1|Name=mRNA_Ecto-sp13_S_contig200.6519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:19682..21933+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCACCGATAACTGGAGAGCTAGACCTCAGGTCTGTGTTTCCAGA
GTGGTTACCCGGGAAACACTACATGGTGACGGCCCTCACGTACCTCAAGA
AGGTTTTTTACATGAAGGACTTCTCCTTCCCTCGACCAGCCAACCCAGAG
GCACAAGCACTGTTCCAGGATGACAAGCGGGGATTCCTCGAAAGAGTCGA
AGCGTGCGTGCGCGAGAGTCAGGAGACTGTGTACGAGAACGAGGAAGGGT
CCAGCTTGCGCTTCACGGAGCCCAAACCAGCACATGACAAGCTTCGGAAA
AAGATTTTGGGTACAGATCAGGCAGGGACGTCGTCCCTGTCGCCTACAGG
CACAAGAGAGCTGAAAGTCAGCACGGCAGCAACAATCGGTGCTGGAGAAG
GATCAACTGAGACCGATAGAGCGCAAGAACATTCTGATCGATGA
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