mRNA_Ecto-sp13_S_contig1999.6499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 5.120e-157 Identity = 236/255 (92.55%), Postives = 242/255 (94.90%), Query Frame = 1
Query: 1 MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKV 765
MRAPIAVLAVILAA+PCMAAVYDRAITVFSPDGKLMQVSYAEEAVK+GSL VAACNGRDAIAMCLERPAADGDI DPDATPSR SETTVATSAI DA AGAAGDTA AGD HVYS+R++RRK EGGVRDPG GVGIVDSANNQDRKLCEID+GVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVG LQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEW ASAVGKASDK
Sbjct: 1 MRAPIAVLAVILAARPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKQGSLGVAACNGRDAIAMCLERPAADGDITDPDATPSRASETTVATSAITDAGAGAAGDTARAGDDHVYSRRRNRRKHHEGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGELQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWTASAVGKASDKA 255
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE) HSP 1 Score: 460 bits (1183), Expect = 1.280e-156 Identity = 240/255 (94.12%), Postives = 247/255 (96.86%), Query Frame = 1
Query: 1 MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKV 765
MRAPIAVLAVILAA+PC+AAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERP ADGD+ DPDATPSRPSETTVATS I DA AGAAGDTA AGDAHVYS+R+SRRKRREGGVRDPG GVGIVDSANNQDRKLCEID+GVYLAFAGISADGRVLASKIRLECQS+RYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDK
Sbjct: 309 MRAPIAVLAVILAARPCIAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPEADGDVTDPDATPSRPSETTVATSVITDAGAGAAGDTAGAGDAHVYSRRRSRRKRREGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSFRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKA 563
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A5J4ZA11_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZA11_PORPP) HSP 1 Score: 155 bits (391), Expect = 1.970e-42 Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRAITVFSPDG L QV YA EAV++G+ AV G+D + +CLE+ + TA+ +A RK+C +D + LAFAG++AD RVL +K R+ECQSYR ++ APSV Y+ RY+ G+Q RYT++GG RP+G++ L+ GFD D P +F+++PSG Y+EW A+A+G+ S V E
Sbjct: 4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGV-RGKDVLVLCLEKKS-----------------------------------TAKLQEARTV-------------------------------RKICNLDQHIVLAFAGLTADARVLINKARVECQSYRLTVEDAPSVDYVTRYIAGVQQRYTQSGGVRPFGISSLIVGFDTDGS-PRLFQTDPSGTYSEWKANAIGRNSKTVTEF 172
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A2P2IA53_9CRUS (Proteasome subunit alpha type n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IA53_9CRUS) HSP 1 Score: 147 bits (371), Expect = 7.630e-40 Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRA+TVFSPDG L QV YA EAV +G+ AV GR+ + + +E+ + TA+ DA RK+CE+D + LAFAG++AD RVL +K RLECQSYR ++ +P+VGYIA+Y+ +Q +YT+ GG RP+G+A ++ GF++D P+++++EPSGA++EW ASA G+ VRE
Sbjct: 4 YDRALTVFSPDGHLFQVEYATEAVNKGTTAVGV-RGRELLVIGVEKKS-----------------------------------TAKLQDARTV-------------------------------RKICEVDQHIVLAFAGLTADARVLVNKARLECQSYRLTVEDSPTVGYIAQYIARVQQKYTQRGGRRPFGIAGIIIGFNKDGS-PALYQTEPSGAFSEWKASATGRNHKSVREF 172
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A1E3NWE8_WICAA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3NWE8_WICAA) HSP 1 Score: 146 bits (368), Expect = 2.320e-39 Identity = 83/237 (35.02%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRA+++FSPDG + QV YA EAVKRG+ AV G+D + + ER + ++DP TPS K+ +ID+ V+LAFAG++AD R+L K RLE QS+R ++ ++ Y+ +YV G+Q RYT++GG RP+G+A L+AGFDE+ +P ++++EPSG Y+ W A+++G++S VRE
Sbjct: 4 YDRALSIFSPDGHVFQVEYASEAVKRGTCAVGV-KGKDVVVLGCERRST-LKLQDPRITPS----------------------------------------------------------------KITKIDNHVFLAFAGLNADARILVDKARLEAQSHRLTLEDPVTIDYLTKYVAGVQQRYTQSGGVRPFGIATLIAGFDENDNVPKLYQTEPSGIYSAWKANSIGRSSKTVREF 174
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A061BCM8_CYBFA (CYFA0S36e00804g1_1 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061BCM8_CYBFA) HSP 1 Score: 146 bits (368), Expect = 2.450e-39 Identity = 84/237 (35.44%), Postives = 123/237 (51.90%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRA+++FSPDG + QV YA EAVKRG+ AV G+D + + E+ + ++DP TPS K+ +D YLAFAG++AD R+L K RLE QS+R ++ S+ Y+ RYV G+Q RYT++GG RP+G+A L+AGFDE+ +P ++++EPSG Y+ W AS++G++S VRE
Sbjct: 4 YDRALSIFSPDGHVFQVEYASEAVKRGTCAVGV-KGKDVVVLACEKRST-LKLQDPRITPS----------------------------------------------------------------KINMVDKHAYLAFAGLNADARILVDKARLEAQSHRLTLEDPVSIDYLTRYVAGVQQRYTQSGGVRPFGIATLIAGFDENDDVPKLYQTEPSGIYSAWKASSIGRSSKTVREF 174
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A2D4BWM3_PYTIN (Proteasome subunit alpha type n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BWM3_PYTIN) HSP 1 Score: 146 bits (368), Expect = 2.510e-39 Identity = 86/237 (36.29%), Postives = 123/237 (51.90%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRAITVFSPDG L QV YA EAVK+G++ V G++A+ + +ER +TA+ D RK+C++DD + +AFAG++AD RVL +K RLECQSYR ++ APSV Y+ARY+ +Q +YT+ GG RP+G++ L+AG D + P ++ +EPSG ++ W A+AVG S +RE
Sbjct: 5 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKEAVILAVERR-----------------------------------ETAKLQDPRTV-------------------------------RKICKVDDHISIAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYIARVQQKYTQRGGVRPFGISMLIAGCDNQGV-PQLYLTEPSGIFSAWKANAVGNKSTNIREF 173
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A024TP35_9STRA (Proteasome subunit alpha type n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TP35_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.720e-39 Identity = 89/241 (36.93%), Postives = 122/241 (50.62%), Query Frame = 1
Query: 52 MAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
MA+ YDRAITVFSPDG L QV YA EAVKRG++ V G D + + +ER +TA+ D RK+C++DD + LAFAG++AD RVL +K RLECQSYR ++ APSV Y+ARYV +Q RYT+ GG RP+G++ L+AG D + P +++++PSG + W A+A G+ RE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVERK-----------------------------------ETAKLQDPRTV-------------------------------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTKGV-PQLYQTDPSGTFTAWKANATGRNEKSTREF 173
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A7S1TNP8_9RHOD (Proteasome subunit alpha type n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNP8_9RHOD) HSP 1 Score: 147 bits (370), Expect = 2.840e-39 Identity = 86/237 (36.29%), Postives = 124/237 (52.32%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
YDRAITVFSPDG L QV YA EAV++G+ A+ G + +C+E+ + +K Q R RK+C++D + LAFAG++AD RVL +K R+ECQSYR ++ APSV YI RY+ G+Q RYT++GG RP+G++ L+ GFD D P +F+++PSG+++EW A+A+G+ S V E
Sbjct: 4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAIGV-RGAGVLVLCVEKKST--------------------------------------------AKLQEPRTV----------------------RKICKLDSHILLAFAGLTADARVLVNKARVECQSYRLTVEDAPSVDYITRYIAGVQQRYTQSGGVRPFGISTLIVGFDLDGS-PRLFQTDPSGSFSEWKAAAIGRNSKTVSEF 172
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A7S3YE59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE59_HETAK) HSP 1 Score: 149 bits (375), Expect = 3.170e-39 Identity = 89/238 (37.39%), Postives = 124/238 (52.10%), Query Frame = 1
Query: 64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDE---DTLLPSVFRSEPSGAYAEWAASAVGKASDKVR 768
YDR+IT+FSPDGKL QV YAE+AV G+ A+A N +D+I +C + + +Q R+ +++P ++ +K +ID+ ++L +AG+ ADGRVLA K RLECQ YR+SMG APSV YIA + +QH YTR GARP+GV CLV GFD P +FR +PSG AEW+ VG+ S +++
Sbjct: 28 YDRSITIFSPDGKLEQVEYAEKAVHHGAPAMALTNQKDSIVVC-----------------------------------------------YGVANQQERK------LQNP-----------SESQKFMKIDEHIFLTYAGLKADGRVLAQKARLECQQYRFSMGEAPSVEYIATRIADIQHSYTRRPGARPFGVGCLVVGFDAAAGGAGGPRIFRVDPSGYLAEWSGVCVGRDSSEIQ 201 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1999.6499.1 >prot_Ecto-sp13_S_contig1999.6499.1 ID=prot_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLback to top mRNA from alignment at Ecto-sp13_S_contig1999:11925..15006+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1999.6499.1 ID=mRNA_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:11925..15006+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1999:11925..15006+ >mRNA_Ecto-sp13_S_contig1999.6499.1 ID=mRNA_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:11925..15006+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |