mRNA_Ecto-sp13_S_contig1999.6499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1999.6499.1
Unique NamemRNA_Ecto-sp13_S_contig1999.6499.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 5.120e-157
Identity = 236/255 (92.55%), Postives = 242/255 (94.90%), Query Frame = 1
Query:    1 MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKV 765
            MRAPIAVLAVILAA+PCMAAVYDRAITVFSPDGKLMQVSYAEEAVK+GSL VAACNGRDAIAMCLERPAADGDI DPDATPSR SETTVATSAI DA AGAAGDTA AGD HVYS+R++RRK  EGGVRDPG GVGIVDSANNQDRKLCEID+GVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVG LQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEW ASAVGKASDK 
Sbjct:    1 MRAPIAVLAVILAARPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKQGSLGVAACNGRDAIAMCLERPAADGDITDPDATPSRASETTVATSAITDAGAGAAGDTARAGDDHVYSRRRNRRKHHEGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGELQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWTASAVGKASDKA 255          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 1.280e-156
Identity = 240/255 (94.12%), Postives = 247/255 (96.86%), Query Frame = 1
Query:    1 MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKV 765
            MRAPIAVLAVILAA+PC+AAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERP ADGD+ DPDATPSRPSETTVATS I DA AGAAGDTA AGDAHVYS+R+SRRKRREGGVRDPG GVGIVDSANNQDRKLCEID+GVYLAFAGISADGRVLASKIRLECQS+RYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDK 
Sbjct:  309 MRAPIAVLAVILAARPCIAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPEADGDVTDPDATPSRPSETTVATSVITDAGAGAAGDTAGAGDAHVYSRRRSRRKRREGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSFRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKA 563          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A5J4ZA11_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZA11_PORPP)

HSP 1 Score: 155 bits (391), Expect = 1.970e-42
Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRAITVFSPDG L QV YA EAV++G+ AV    G+D + +CLE+ +                                   TA+  +A                                  RK+C +D  + LAFAG++AD RVL +K R+ECQSYR ++  APSV Y+ RY+ G+Q RYT++GG RP+G++ L+ GFD D   P +F+++PSG Y+EW A+A+G+ S  V E 
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGV-RGKDVLVLCLEKKS-----------------------------------TAKLQEARTV-------------------------------RKICNLDQHIVLAFAGLTADARVLINKARVECQSYRLTVEDAPSVDYVTRYIAGVQQRYTQSGGVRPFGISSLIVGFDTDGS-PRLFQTDPSGTYSEWKANAIGRNSKTVTEF 172          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A2P2IA53_9CRUS (Proteasome subunit alpha type n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IA53_9CRUS)

HSP 1 Score: 147 bits (371), Expect = 7.630e-40
Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRA+TVFSPDG L QV YA EAV +G+ AV    GR+ + + +E+ +                                   TA+  DA                                  RK+CE+D  + LAFAG++AD RVL +K RLECQSYR ++  +P+VGYIA+Y+  +Q +YT+ GG RP+G+A ++ GF++D   P+++++EPSGA++EW ASA G+    VRE 
Sbjct:    4 YDRALTVFSPDGHLFQVEYATEAVNKGTTAVGV-RGRELLVIGVEKKS-----------------------------------TAKLQDARTV-------------------------------RKICEVDQHIVLAFAGLTADARVLVNKARLECQSYRLTVEDSPTVGYIAQYIARVQQKYTQRGGRRPFGIAGIIIGFNKDGS-PALYQTEPSGAFSEWKASATGRNHKSVREF 172          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A1E3NWE8_WICAA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3NWE8_WICAA)

HSP 1 Score: 146 bits (368), Expect = 2.320e-39
Identity = 83/237 (35.02%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRA+++FSPDG + QV YA EAVKRG+ AV    G+D + +  ER +    ++DP  TPS                                                                K+ +ID+ V+LAFAG++AD R+L  K RLE QS+R ++    ++ Y+ +YV G+Q RYT++GG RP+G+A L+AGFDE+  +P ++++EPSG Y+ W A+++G++S  VRE 
Sbjct:    4 YDRALSIFSPDGHVFQVEYASEAVKRGTCAVGV-KGKDVVVLGCERRST-LKLQDPRITPS----------------------------------------------------------------KITKIDNHVFLAFAGLNADARILVDKARLEAQSHRLTLEDPVTIDYLTKYVAGVQQRYTQSGGVRPFGIATLIAGFDENDNVPKLYQTEPSGIYSAWKANSIGRSSKTVREF 174          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A061BCM8_CYBFA (CYFA0S36e00804g1_1 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061BCM8_CYBFA)

HSP 1 Score: 146 bits (368), Expect = 2.450e-39
Identity = 84/237 (35.44%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRA+++FSPDG + QV YA EAVKRG+ AV    G+D + +  E+ +    ++DP  TPS                                                                K+  +D   YLAFAG++AD R+L  K RLE QS+R ++    S+ Y+ RYV G+Q RYT++GG RP+G+A L+AGFDE+  +P ++++EPSG Y+ W AS++G++S  VRE 
Sbjct:    4 YDRALSIFSPDGHVFQVEYASEAVKRGTCAVGV-KGKDVVVLACEKRST-LKLQDPRITPS----------------------------------------------------------------KINMVDKHAYLAFAGLNADARILVDKARLEAQSHRLTLEDPVSIDYLTRYVAGVQQRYTQSGGVRPFGIATLIAGFDENDDVPKLYQTEPSGIYSAWKASSIGRSSKTVREF 174          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A2D4BWM3_PYTIN (Proteasome subunit alpha type n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BWM3_PYTIN)

HSP 1 Score: 146 bits (368), Expect = 2.510e-39
Identity = 86/237 (36.29%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRAITVFSPDG L QV YA EAVK+G++ V    G++A+ + +ER                                    +TA+  D                                   RK+C++DD + +AFAG++AD RVL +K RLECQSYR ++  APSV Y+ARY+  +Q +YT+ GG RP+G++ L+AG D   + P ++ +EPSG ++ W A+AVG  S  +RE 
Sbjct:    5 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKEAVILAVERR-----------------------------------ETAKLQDPRTV-------------------------------RKICKVDDHISIAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYIARVQQKYTQRGGVRPFGISMLIAGCDNQGV-PQLYLTEPSGIFSAWKANAVGNKSTNIREF 173          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A024TP35_9STRA (Proteasome subunit alpha type n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TP35_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.720e-39
Identity = 89/241 (36.93%), Postives = 122/241 (50.62%), Query Frame = 1
Query:   52 MAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            MA+ YDRAITVFSPDG L QV YA EAVKRG++ V    G D + + +ER                                    +TA+  D                                   RK+C++DD + LAFAG++AD RVL +K RLECQSYR ++  APSV Y+ARYV  +Q RYT+ GG RP+G++ L+AG D   + P +++++PSG +  W A+A G+     RE 
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGV-RGADVVVLAVERK-----------------------------------ETAKLQDPRTV-------------------------------RKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVAKVQQRYTQRGGVRPFGISMLIAGCDTKGV-PQLYQTDPSGTFTAWKANATGRNEKSTREF 173          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A7S1TNP8_9RHOD (Proteasome subunit alpha type n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNP8_9RHOD)

HSP 1 Score: 147 bits (370), Expect = 2.840e-39
Identity = 86/237 (36.29%), Postives = 124/237 (52.32%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKVREI 774
            YDRAITVFSPDG L QV YA EAV++G+ A+    G   + +C+E+ +                                             +K Q  R                        RK+C++D  + LAFAG++AD RVL +K R+ECQSYR ++  APSV YI RY+ G+Q RYT++GG RP+G++ L+ GFD D   P +F+++PSG+++EW A+A+G+ S  V E 
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAIGV-RGAGVLVLCVEKKST--------------------------------------------AKLQEPRTV----------------------RKICKLDSHILLAFAGLTADARVLVNKARVECQSYRLTVEDAPSVDYITRYIAGVQQRYTQSGGVRPFGISTLIVGFDLDGS-PRLFQTDPSGSFSEWKAAAIGRNSKTVSEF 172          
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Match: A0A7S3YE59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE59_HETAK)

HSP 1 Score: 149 bits (375), Expect = 3.170e-39
Identity = 89/238 (37.39%), Postives = 124/238 (52.10%), Query Frame = 1
Query:   64 YDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAGAAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCEIDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDE---DTLLPSVFRSEPSGAYAEWAASAVGKASDKVR 768
            YDR+IT+FSPDGKL QV YAE+AV  G+ A+A  N +D+I +C                                               +  + +Q R+      +++P           ++ +K  +ID+ ++L +AG+ ADGRVLA K RLECQ YR+SMG APSV YIA  +  +QH YTR  GARP+GV CLV GFD        P +FR +PSG  AEW+   VG+ S +++
Sbjct:   28 YDRSITIFSPDGKLEQVEYAEKAVHHGAPAMALTNQKDSIVVC-----------------------------------------------YGVANQQERK------LQNP-----------SESQKFMKIDEHIFLTYAGLKADGRVLAQKARLECQQYRFSMGEAPSVEYIATRIADIQHSYTRRPGARPFGVGCLVVGFDAAAGGAGGPRIFRVDPSGYLAEWSGVCVGRDSSEIQ 201          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1999.6499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW0_ECTSI5.120e-15792.5520S proteasome subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K8Y9_9PHAE1.280e-15694.12PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A5J4ZA11_PORPP1.970e-4237.55Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]
A0A2P2IA53_9CRUS7.630e-4036.71Proteasome subunit alpha type n=1 Tax=Hirondellea ... [more]
A0A1E3NWE8_WICAA2.320e-3935.02PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A061BCM8_CYBFA2.450e-3935.44CYFA0S36e00804g1_1 n=2 Tax=Cyberlindnera fabianii ... [more]
A0A2D4BWM3_PYTIN2.510e-3936.29Proteasome subunit alpha type n=2 Tax=Pythium TaxI... [more]
A0A024TP35_9STRA2.720e-3936.93Proteasome subunit alpha type n=4 Tax=Aphanomyces ... [more]
A0A7S1TNP8_9RHOD2.840e-3936.29Proteasome subunit alpha type n=1 Tax=Erythrolobus... [more]
A0A7S3YE59_HETAK3.170e-3937.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1999contigEcto-sp13_S_contig1999:11925..15006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score454.9
Seed ortholog evalue2.5e-125
Seed eggNOG ortholog2880.D8LEW0
Model size780
KEGG koko:K02731
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons4
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0183@2759
Ec32 ortholog description20S proteasome subunit
Ec32 orthologEc-21_005760.1
EC3.4.25.1
Cds size780
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.0136578-CDS-Ecto-sp13_S_contig1999:11924..120351681463005.0136578-CDS-Ecto-sp13_S_contig1999:11924..12035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 11925..12035 +
1681463005.0260925-CDS-Ecto-sp13_S_contig1999:13079..134181681463005.0260925-CDS-Ecto-sp13_S_contig1999:13079..13418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 13080..13418 +
1681463005.0361125-CDS-Ecto-sp13_S_contig1999:13900..140421681463005.0361125-CDS-Ecto-sp13_S_contig1999:13900..14042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 13901..14042 +
1681463005.0520191-CDS-Ecto-sp13_S_contig1999:14818..150061681463005.0520191-CDS-Ecto-sp13_S_contig1999:14818..15006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 14819..15006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1999.6499.1prot_Ecto-sp13_S_contig1999.6499.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1999 11925..15006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1999.6499.1

>prot_Ecto-sp13_S_contig1999.6499.1 ID=prot_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MRAPIAVLAVILAAQPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSL
AVAACNGRDAIAMCLERPAADGDIKDPDATPSRPSETTVATSAIADADAG
AAGDTAEAGDAHVYSKRQSRRKRREGGVRDPGAGVGIVDSANNQDRKLCE
IDDGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGGL
QHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGK
ASDKVREIR*
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mRNA from alignment at Ecto-sp13_S_contig1999:11925..15006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1999.6499.1 ID=mRNA_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:11925..15006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGCTCCCATAGCGGTCCTGGCGGTGATTCTGGCTGCTCAGCCTTG TATGGCTGCCGTCTACGACCGTGCCATCACAGTTTTCTCCCCCGATGGCA AACTGATGCAGGTATGATACGCGGCGCAATTGACTGTAGTCTAGACTATC GTCATATCGACTAGGTATCGACTGCTGCGGTAGCACCGCCGTCCGTTACG GCGGGAGTGCGCTACTGCTTAGATACCGCTATGCCAAAGGTAAAGATGTG CAGTTACCGACTCCTGGTGGCAAGCGCTTTTCCCCACACGCCTGTTGCGG CGAAGCCGACGTTGGGTAACAGCAGTGTGTGCGAAATTCAAATTTTGTGG AGGTTTTGTGGCGTACCGCAGCATCAGCATCCGTAGGGTGTGGACGTGTG GATTGGCTTCTTCAAGCTCGCGGTATTGTGGGTTTACTTGGTGTTGATGC GATGCATTCTTGTGTTTGGTATCCGTGTACCTCGTGCAGATCATCTTGTA CGGCAGGAATATACTACATTTGCAGTGTATGTAGCACAGAAACATTTTTT TTTTGTCTTGTCCTAACTTCAAATCAGCACTAGTGCCGTTTACTCCAACC CGTGGTCACACAGAAGAGCCCCTCTCTGCCCTTCCCTCCGGCGGTACTTT GCCTTCGATTTATGCGCGAAGAGTTCAGCACTCTCTTCCATCTGTGTACA CACGACCTAGCGCTGTCCACTAGGCCAGGAGCGGAAGCGAAAGAAAAACT CGCTTCGTAAGAAAAGCTCGCTCATGCCGGGAGTCAAACCCTTAATCGAA CCTCTAGACGGTTCCGAGAATATCAACCAGACCATCGGGGCGACCGGCCT CAAGCATGCATTGGCCTATTCAATCGCGCGGCATTTGGCCCTCACTCATT GCATAGGTCCACATCACGGCGGTCGGTGTGTTTGCGCCGGGCCTGTGCTC ACTTCTCAAACCCTCAGCGCTGTCGTTTTGTTCCTGCTGCGGTCTTCACC TGAACATGGAGCAACTACACGACCCCAAGAATTGATGCAACCGTTCCGAA AATGTTCCATCGTTGTACAGCGACGTTTGCAACTCGGCATCCGCTCCAGT CGCGTCGACTGTACTCTTCGTTTCTCCTTGTTTGTCTTCCATCTTCGTCT TTCAGGTGTCCTACGCGGAGGAAGCGGTGAAGCGAGGAAGCCTTGCGGTT GCCGCGTGCAACGGCCGCGACGCCATCGCAATGTGCCTCGAGCGCCCCGC AGCCGACGGCGATATCAAAGACCCGGATGCAACACCGTCACGACCATCCG AGACAACGGTTGCGACCTCAGCCATCGCCGACGCCGACGCCGGCGCCGCC GGAGACACGGCAGAAGCGGGCGATGCACATGTCTACAGCAAGCGGCAGAG TAGACGCAAACGTCGCGAGGGAGGCGTGCGTGATCCAGGGGCCGGGGTGG GTATCGTGGACAGCGCTAACAACCAGGATCGAAAGCTGTGTGAGGTGTGT GAAAACCACGCGTATGCTTGCATTCCTACATGACGAGGGACAAGATTTTT ATGGGAGGGGGCGGTGATGTGTGGTGGCCGGAGGGCGCTCTCATGTGAGA TGGTGCTTTGAACTGCACTTGACCCGTTGTTAATGGTACATCTTAGCACC CACGCGATTGCCTCCCTCTCTTGGCGATGATGTCTATCCATTGGGAATGC TCGCAGCGTTCTATGATGAATGTCCCCCACCCCCTTCACGGCAGCAGCTC CCTCTTTAGCGACGACCCTCTCCACTCCGTCAAGTCGGTGGACACACGGC ACTTCCCCCCCTCCCCTCCCAAACCGTTTGACGGAACACGGCTGCCCAGA ACTTGGAGTTAGTCTCCAGGGCGTCGACTTCCGCTGAATTGTAGCATGTA TGAAAATTATTGATGTTTTTGCTGACTTAATCGCACCGTGCGTTCTTTTG TTCGCCGAACACGCCGCCTTGTAAAGATCGATGACGGAGTCTACCTCGCG TTCGCGGGCATTTCGGCGGACGGTCGCGTCTTGGCGTCCAAGATAAGGCT GGAGTGTCAGAGCTACCGGTACAGCATGGGAGCCGCTCCGAGCGTTGGGT ACATCGCCAGATATGTCGGTGAGCAGCTATGACATATCTATATTGGCCAG CCACTTACTCTTGGTATTTCTGCACGGCAACAGCAGCAGTAGTAGTTGTT GTTACTGTCTTCACATTAAAAACCGTTCCGATCACTACCCAGTACCGTAC TGAGCTACCACTGACGCGTTCGATTTCCGTGATCACAATAGGGGAGGTTG CTTTTACGTAGTTTCCTTCTGGTTATATCCAACGTGTCTCAAAAGTCTCG GTGCTGCTGCACGCAGATGGGCGTGTCTTCCACGGATGTAGGCGCTGCTG CTCCGACACGACTCCACCTTTTGTGTCTCATGTGTATGTTGTTGTGCCGA ACTAAGCTTCGTTTTTTCTTGCCTGCATGTGGTTACGCTCACGAATCGAC CTCGTATGTTCACCCACAATCAATCAGAAGATTCTGATGGCGGGTGTTCA TACGAGGTCGATTCATATACGTAACCATATGCACTCCTCTTGGCAACAAG AACCCAAGCGCATATTGCTATGGGTTTGATTCAGTTGCTAAAGCACACGA ACAGGCTGAGCGTTTTTTGATCGGTATCCACACTCACAACAACCCCAAAG ATCATCTTGTCCATCCTGATTTTCGTCAGGAGGACTGCAGGGGCGCCATC GTCACTTCCACGTAGCTCCTTCGCCGCAGCAAGCACTCACAGAACGTTCT CTAAACTCCCACTTTTTTGGGCTCGCCTGCGTTGGTTTTCGATTAACTCG TCCTCCTTCTGCTGCTACTGCTGCTACCGCTGCTGCCATGCCAGGAGGAC TGCAGCACCGCTACACCCGCACCGGCGGCGCGCGTCCCTACGGCGTCGCT TGCCTTGTCGCCGGATTCGACGAGGACACGCTGCTCCCCAGCGTCTTCCG GTCGGAGCCGTCGGGGGCATACGCGGAGTGGGCCGCTTCCGCGGTAGGGA AGGCTTCGGACAAGGTGAGAGAGATACGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1999:11925..15006+

>mRNA_Ecto-sp13_S_contig1999.6499.1 ID=mRNA_Ecto-sp13_S_contig1999.6499.1|Name=mRNA_Ecto-sp13_S_contig1999.6499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:11925..15006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGCTCCCATAGCGGTCCTGGCGGTGATTCTGGCTGCTCAGCCTTG
TATGGCTGCCGTCTACGACCGTGCCATCACAGTTTTCTCCCCCGATGGCA
AACTGATGCAGGTGTCCTACGCGGAGGAAGCGGTGAAGCGAGGAAGCCTT
GCGGTTGCCGCGTGCAACGGCCGCGACGCCATCGCAATGTGCCTCGAGCG
CCCCGCAGCCGACGGCGATATCAAAGACCCGGATGCAACACCGTCACGAC
CATCCGAGACAACGGTTGCGACCTCAGCCATCGCCGACGCCGACGCCGGC
GCCGCCGGAGACACGGCAGAAGCGGGCGATGCACATGTCTACAGCAAGCG
GCAGAGTAGACGCAAACGTCGCGAGGGAGGCGTGCGTGATCCAGGGGCCG
GGGTGGGTATCGTGGACAGCGCTAACAACCAGGATCGAAAGCTGTGTGAG
ATCGATGACGGAGTCTACCTCGCGTTCGCGGGCATTTCGGCGGACGGTCG
CGTCTTGGCGTCCAAGATAAGGCTGGAGTGTCAGAGCTACCGGTACAGCA
TGGGAGCCGCTCCGAGCGTTGGGTACATCGCCAGATATGTCGGAGGACTG
CAGCACCGCTACACCCGCACCGGCGGCGCGCGTCCCTACGGCGTCGCTTG
CCTTGTCGCCGGATTCGACGAGGACACGCTGCTCCCCAGCGTCTTCCGGT
CGGAGCCGTCGGGGGCATACGCGGAGTGGGCCGCTTCCGCGGTAGGGAAG
GCTTCGGACAAGGTGAGAGAGATACGGTAA
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