mRNA_Ecto-sp13_S_contig19896.6466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 102 bits (253), Expect = 4.470e-24 Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query: 1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
+EERILC+CGGAGR T GGEGGVMMLDCDRCHRWFHGHCVGITSQE
Sbjct: 936 EEERILCICGGAGRDTGGGEGGVMMLDCDRCHRWFHGHCVGITSQE 981
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13 Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 1
Query: 40 RGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
RGT G EGGVMMLDCDRCHRWFHG CVGITSQE
Sbjct: 955 RGTGGEEGGVMMLDCDRCHRWFHGRCVGITSQE 987
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU) HSP 1 Score: 61.6 bits (148), Expect = 7.460e-10 Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
E CVCG RG +GG MLDCDRCHRWFHG CVGI +QE
Sbjct: 153 EDATCVCG---RGYDGG----FMLDCDRCHRWFHGSCVGIEAQE 189
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT) HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7 Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query: 7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGI 126
E C+CG EG +G MLDCD+CHRWFHG CVGI
Sbjct: 706 EDASCICG------EGHKGEGFMLDCDKCHRWFHGACVGI 739
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S3F1Q1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1Q1_9EUKA) HSP 1 Score: 50.4 bits (119), Expect = 1.940e-6 Identity = 23/42 (54.76%), Postives = 25/42 (59.52%), Query Frame = 1
Query: 7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITS 132
E C CG RG GE MLDCD CHRWFHG CVG+ +
Sbjct: 32 EDARCFCG---RGYNTGE---FMLDCDSCHRWFHGVCVGVDT 67
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC) HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6 Identity = 24/47 (51.06%), Postives = 26/47 (55.32%), Query Frame = 1
Query: 1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
+EE C CG R + MLDCDRCH WFHG CVGIT V
Sbjct: 704 KEEVNRCFCG---RDLD-----TFMLDCDRCHSWFHGSCVGITKDAV 742
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS) HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6 Identity = 22/47 (46.81%), Postives = 25/47 (53.19%), Query Frame = 1
Query: 1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
+EE C CG T M+DCDRCH WFHG C+GIT V
Sbjct: 847 KEEINKCFCGRGNLDT-------FMVDCDRCHSWFHGSCIGITKDTV 886
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A2P6NED8_9EUKA (PHD-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NED8_9EUKA) HSP 1 Score: 50.8 bits (120), Expect = 4.780e-6 Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 4 EERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
EER C+CG G GG MLDCD+CH WFH CVGI +++
Sbjct: 34 EER--CICGQ-------GYGGRFMLDCDKCHFWFHSTCVGIDRKKI 70
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.790e-6 Identity = 20/41 (48.78%), Postives = 23/41 (56.10%), Query Frame = 1
Query: 19 CVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
C+CG G MLDCDRCH WFHG CVG+T +
Sbjct: 495 CLCGRTGLVD------TFMLDCDRCHAWFHGSCVGVTKDSL 529
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 7.430e-6 Identity = 20/39 (51.28%), Postives = 23/39 (58.97%), Query Frame = 1
Query: 19 CVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQ 135
C+C + G G MLDCD CHRWFHG CVGI +
Sbjct: 44 CIC-------KRGSDGRFMLDCDTCHRWFHGDCVGIREE 75 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19896.6466.1 >prot_Ecto-sp13_S_contig19896.6466.1 ID=prot_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEVback to top mRNA from alignment at Ecto-sp13_S_contig19896:3016..3156- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19896.6466.1 ID=mRNA_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19896:3016..3156- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19896:3016..3156- >mRNA_Ecto-sp13_S_contig19896.6466.1 ID=mRNA_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19896:3016..3156- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |