mRNA_Ecto-sp13_S_contig19896.6466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19896.6466.1
Unique NamemRNA_Ecto-sp13_S_contig19896.6466.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.470e-24
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
            +EERILC+CGGAGR T GGEGGVMMLDCDRCHRWFHGHCVGITSQE
Sbjct:  936 EEERILCICGGAGRDTGGGEGGVMMLDCDRCHRWFHGHCVGITSQE 981          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 1
Query:   40 RGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
            RGT G EGGVMMLDCDRCHRWFHG CVGITSQE
Sbjct:  955 RGTGGEEGGVMMLDCDRCHRWFHGRCVGITSQE 987          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 7.460e-10
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQE 138
            E   CVCG   RG +GG     MLDCDRCHRWFHG CVGI +QE
Sbjct:  153 EDATCVCG---RGYDGG----FMLDCDRCHRWFHGSCVGIEAQE 189          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT)

HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:    7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGI 126
            E   C+CG      EG +G   MLDCD+CHRWFHG CVGI
Sbjct:  706 EDASCICG------EGHKGEGFMLDCDKCHRWFHGACVGI 739          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S3F1Q1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1Q1_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 1.940e-6
Identity = 23/42 (54.76%), Postives = 25/42 (59.52%), Query Frame = 1
Query:    7 ERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITS 132
            E   C CG   RG   GE    MLDCD CHRWFHG CVG+ +
Sbjct:   32 EDARCFCG---RGYNTGE---FMLDCDSCHRWFHGVCVGVDT 67          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 24/47 (51.06%), Postives = 26/47 (55.32%), Query Frame = 1
Query:    1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
            +EE   C CG   R  +       MLDCDRCH WFHG CVGIT   V
Sbjct:  704 KEEVNRCFCG---RDLD-----TFMLDCDRCHSWFHGSCVGITKDAV 742          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 22/47 (46.81%), Postives = 25/47 (53.19%), Query Frame = 1
Query:    1 QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
            +EE   C CG     T        M+DCDRCH WFHG C+GIT   V
Sbjct:  847 KEEINKCFCGRGNLDT-------FMVDCDRCHSWFHGSCIGITKDTV 886          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A2P6NED8_9EUKA (PHD-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NED8_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 4.780e-6
Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    4 EERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
            EER  C+CG        G GG  MLDCD+CH WFH  CVGI  +++
Sbjct:   34 EER--CICGQ-------GYGGRFMLDCDKCHFWFHSTCVGIDRKKI 70          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.790e-6
Identity = 20/41 (48.78%), Postives = 23/41 (56.10%), Query Frame = 1
Query:   19 CVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV 141
            C+CG  G           MLDCDRCH WFHG CVG+T   +
Sbjct:  495 CLCGRTGLVD------TFMLDCDRCHAWFHGSCVGVTKDSL 529          
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.430e-6
Identity = 20/39 (51.28%), Postives = 23/39 (58.97%), Query Frame = 1
Query:   19 CVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQ 135
            C+C       + G  G  MLDCD CHRWFHG CVGI  +
Sbjct:   44 CIC-------KRGSDGRFMLDCDTCHRWFHGDCVGIREE 75          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19896.6466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FSV8_ECTSI4.470e-2491.30Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE1.190e-1390.91PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3VWS1_EMIHU7.460e-1063.64Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4B8G5_CHRCT2.860e-757.50Sister chromatid cohesion protein (Fragment) n=1 T... [more]
A0A7S3F1Q1_9EUKA1.940e-654.76Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
K0SHJ0_THAOC2.560e-651.06Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]
B8BTF2_THAPS2.560e-646.81Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]
A0A2P6NED8_9EUKA4.780e-650.00PHD-type domain-containing protein n=1 Tax=Planopr... [more]
A0A7S4RR27_9STRA4.790e-648.78Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A7S1CNW5_9STRA7.430e-651.28Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19896contigEcto-sp13_S_contig19896:3016..3156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D7FSV8
Model size141
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
Cds size141
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.0492766-CDS-Ecto-sp13_S_contig19896:3015..31561681463003.0492766-CDS-Ecto-sp13_S_contig19896:3015..3156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19896 3016..3156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19896.6466.1prot_Ecto-sp13_S_contig19896.6466.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19896 3016..3156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19896.6466.1

>prot_Ecto-sp13_S_contig19896.6466.1 ID=prot_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
QEERILCVCGGAGRGTEGGEGGVMMLDCDRCHRWFHGHCVGITSQEV
back to top

mRNA from alignment at Ecto-sp13_S_contig19896:3016..3156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19896.6466.1 ID=mRNA_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19896:3016..3156- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGAGCGCATCCTGTGCGTCTGCGGCGGCGCTGGTAGGGGCACGGA GGGCGGGGAGGGCGGGGTGATGATGCTCGACTGCGACCGGTGTCACCGCT GGTTCCACGGGCACTGCGTGGGCATCACGTCGCAGGAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19896:3016..3156-

>mRNA_Ecto-sp13_S_contig19896.6466.1 ID=mRNA_Ecto-sp13_S_contig19896.6466.1|Name=mRNA_Ecto-sp13_S_contig19896.6466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19896:3016..3156- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGAGCGCATCCTGTGCGTCTGCGGCGGCGCTGGTAGGGGCACGGA
GGGCGGGGAGGGCGGGGTGATGATGCTCGACTGCGACCGGTGTCACCGCT
GGTTCCACGGGCACTGCGTGGGCATCACGTCGCAGGAGGTG
back to top