mRNA_Ecto-sp13_S_contig19890.6464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19890.6464.1
Unique NamemRNA_Ecto-sp13_S_contig19890.6464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19890.6464.1 vs. uniprot
Match: D7G7A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A0_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.940e-87
Identity = 165/188 (87.77%), Postives = 165/188 (87.77%), Query Frame = 1 
Query:   76 FAGNNGNGAVHARAPSTGNEDFSDFQGSSSAPXXXXXXET-------AGAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKVAEQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGMTGLSGGAGTGMMMGGGMGVQQPMQQPMQ----MQGGWMGAPQQGMGGAGGMGAWAQQQQXXXPGQGF 606
            FAGNNGNGAVHARAPSTGNEDFSDFQGSSS  XXXXXX          GAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKVAEQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGMTGLSGGAGTGMMMGGGMGVQQP          MQGGWMGAPQQGMGGAGGMGAWAQQQQXXX GQGF
Sbjct:  292 FAGNNGNGAVHARAPSTGNEDFSDFQGSSSXXXXXXXXXXXXXXXXXTGAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKVAEQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGMTGLSGGAGTGMMMGGGMGVQQPXXXXXXXXXXMQGGWMGAPQQGMGGAGGMGAWAQQQQXXXXGQGF 479
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BLAST of mRNA_Ecto-sp13_S_contig19890.6464.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.410e-26
Identity = 63/79 (79.75%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   76 FAGNNGNGAVHARAPSTGNEDFSDFQGSSSAPXXXXXXETA-----GAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKV 297
            F+GNNGNGAVHARAPSTGNEDFSDFQG S AP        A     GAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKV
Sbjct:  485 FSGNNGNGAVHARAPSTGNEDFSDFQGCSGAPGGGGETTGAASGGTGAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKV 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19890.6464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A0_ECTSI1.940e-8787.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZR7_9PHAE2.410e-2679.75ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19890contigEcto-sp13_S_contig19890:1368..3218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score280.0
Seed ortholog evalue9.6e-73
Seed eggNOG ortholog2880.D7G7A0
Model size678
KEGG koko:K12471,ko:K12486,ko:K14297
KEGG TC1.I.1
KEGG Pathwayko03013,ko04144,ko05164,map03013,map04144,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.lipid binding
EggNOG OGsKOG2056@1,KOG2056@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-04_003610.1
Cds size678
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.9469454-CDS-Ecto-sp13_S_contig19890:1367..16611681463002.9469454-CDS-Ecto-sp13_S_contig19890:1367..1661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19890 1368..1661 +
1681463002.9590287-CDS-Ecto-sp13_S_contig19890:2834..32181681463002.9590287-CDS-Ecto-sp13_S_contig19890:2834..3218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19890 2835..3218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19890.6464.1prot_Ecto-sp13_S_contig19890.6464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19890 1368..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19890.6464.1

>prot_Ecto-sp13_S_contig19890.6464.1 ID=prot_Ecto-sp13_S_contig19890.6464.1|Name=mRNA_Ecto-sp13_S_contig19890.6464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
AFGDPFAAAPAVVPTTTAIGGGGSAFAGNNGNGAVHARAPSTGNEDFSDF
QGSSSAPGGGGGGETAGAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKVA
EQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGMTGLSGGAGTGM
MMGGGMGVQQPMQQPMQMQGGWMGAPQQGMGGAGGMGAWAQQQQQQQPGQ
GFGMGGGMMGGMQGAGAGAGGAGMGM
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mRNA from alignment at Ecto-sp13_S_contig19890:1368..3218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19890.6464.1 ID=mRNA_Ecto-sp13_S_contig19890.6464.1|Name=mRNA_Ecto-sp13_S_contig19890.6464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19890:1368..3218+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGGAGACCCTTTCGCGGCCGCACCTGCCGTCGTACCGACGACCAC
CGCAATCGGCGGCGGCGGCAGCGCGTTCGCTGGCAACAACGGTAACGGGG
CCGTGCACGCACGTGCCCCCTCCACCGGAAACGAGGACTTCAGCGATTTC
CAGGGTAGCAGCAGCGCGCCCGGAGGCGGCGGCGGCGGCGAGACTGCGGG
CGCGGCGACGAATGGCGCCGTGACTAACCCCAAGTGGAGGGACGTGTCTT
CTCTTGTCGATCTCGGAGGGCTGAGCAGTAACACGGACAAGAAGGTGCGG
CGTTGTGTCGTGGGAGGGCGGGGAGGACCTGATTGGATGTTTGGGGGGGG
AGGGGGGCACTCTTTCTCCTTTTCTGCGTGTACTCTGTTCTCCCGGTCTT
TGCTCCTCTTATTGGCTTGTGCTTTTCGTGTGTTGGGTGTTACTGCCGCG
ATGGGGAGGTTGAGGAACCCCGCAACGGCGAGAGGGTCCTCGTTTCTATC
TCGAAAGAGATTGGGAGCGTCGTGACTCGACAGGTACCCTCCTTCGGTCG
CGTTCTCTCGGGGTTTTTACCCCCCCGCTGTGAACACTGTCAGCTCGTGG
GCGTTCGTTTTGGCCGATGCAGCTTATATTCGAAGAGCATGTCGATGTTT
CGGTTGGCTTGGACCCGACTCTGTCTAGAAAACAGGAAGTGGTTGGAGAT
GCGCCTACCGAAGAACTCGTGTTTCGACTACGGCACACGACACAAGAAAA
CACCAAATTTATGTAACAGGCAGTTGAACGAGGCACGTCGGATAACACCG
GGACTGTTTTCGAGGCCGGTTGTCGATATCAGTAAGGCAATCAAGACATG
ACGATTGATACACATCGTCCGACACGATGCATGTTGAGTACCAGGATAGA
AAACGCTCCTGGTGTTCCGATACCAAGCCTTGTGAGGCAACACAACACGC
CTTTTGACCGCAAGTAGGGGGAACAGCGTATCCTGGGTCTTGCTTTCTCT
TCCTCCCGCGGCTGAAAGCGAAGTCGATTTCGTCGCCGGACGGAGTCCAG
CAAGATTTAGCCCTGACTGTCCATGCTTCGCGGTGTTTCTCGAAGTTTCA
GTTAAATTTAAAGTACCTAACTAATACCCATTGAAATCTCGTAAGAAACC
ATTTGGGCAGCAGATCGCAAAGCTCCTAAAAACGCGTACTTAGAATTTCT
AGACCAACCTAGAGAAGAAACCGCTAAAAAATATAAGCCTCCCAGCTGAG
TATCAGCAAAAGGGATAACTGCCCAACTAATCAGGCTTAAAAAAAAAGTA
CAAAGAGGAGATAAGCCTGTAACCGCAGAAGCTATAATAGTCCATTTGCC
TTGTGGAGAGTGGTAAAGAAGAGGAGGCCAATGGACTGGGCATACGTGAT
GTGGCGAGAAGACAGTAGCAAGACATATTTCAACACTTTTGGAAACCCCC
GTCTGTGTTCGCGGTAGGTTGCGGAGCAGAAGGTCGTGGAGCAGACGTTC
CAGTCGAACAACAACTCCTTCGCGGGCCTGGACGGGTTCAAGGCGCCCCA
GCCGCAGGGCATGGGAATGAACCGCCCCCTGTCTGGAATGACGGGTTTGT
CGGGCGGCGCAGGGACGGGGATGATGATGGGAGGAGGTATGGGCGTTCAG
CAGCCGATGCAGCAGCCGATGCAGATGCAGGGGGGGTGGATGGGCGCCCC
CCAGCAAGGCATGGGCGGAGCTGGAGGGATGGGGGCTTGGGCACAACAGC
AGCAGCAACAGCAGCCGGGGCAAGGCTTCGGCATGGGAGGAGGGATGATG
GGAGGGATGCAGGGAGCCGGCGCCGGCGCTGGGGGTGCAGGAATGGGCAT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19890:1368..3218+

>mRNA_Ecto-sp13_S_contig19890.6464.1 ID=mRNA_Ecto-sp13_S_contig19890.6464.1|Name=mRNA_Ecto-sp13_S_contig19890.6464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19890:1368..3218+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGGAGACCCTTTCGCGGCCGCACCTGCCGTCGTACCGACGACCAC
CGCAATCGGCGGCGGCGGCAGCGCGTTCGCTGGCAACAACGGTAACGGGG
CCGTGCACGCACGTGCCCCCTCCACCGGAAACGAGGACTTCAGCGATTTC
CAGGGTAGCAGCAGCGCGCCCGGAGGCGGCGGCGGCGGCGAGACTGCGGG
CGCGGCGACGAATGGCGCCGTGACTAACCCCAAGTGGAGGGACGTGTCTT
CTCTTGTCGATCTCGGAGGGCTGAGCAGTAACACGGACAAGAAGGTTGCG
GAGCAGAAGGTCGTGGAGCAGACGTTCCAGTCGAACAACAACTCCTTCGC
GGGCCTGGACGGGTTCAAGGCGCCCCAGCCGCAGGGCATGGGAATGAACC
GCCCCCTGTCTGGAATGACGGGTTTGTCGGGCGGCGCAGGGACGGGGATG
ATGATGGGAGGAGGTATGGGCGTTCAGCAGCCGATGCAGCAGCCGATGCA
GATGCAGGGGGGGTGGATGGGCGCCCCCCAGCAAGGCATGGGCGGAGCTG
GAGGGATGGGGGCTTGGGCACAACAGCAGCAGCAACAGCAGCCGGGGCAA
GGCTTCGGCATGGGAGGAGGGATGATGGGAGGGATGCAGGGAGCCGGCGC
CGGCGCTGGGGGTGCAGGAATGGGCATG
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