prot_Ecto-sp13_S_contig1070.645.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1070.645.1
Unique Nameprot_Ecto-sp13_S_contig1070.645.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length229
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: D8LLZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ3_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 5.570e-134
Identity = 212/228 (92.98%), Postives = 216/228 (94.74%), Query Frame = 0 
Query:    1 MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGKEPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVVGTKSVAKGKRDYRRELLYVDLKFSAPTQGLLQESFRADVVQKTPDPSSFAFNRR 228
            MKRVLA LLVTSAATGGMAFQLMASSSSSR APT MKAS SES+SR ALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSG++PIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKV+G KS AKGKRDYR    YVDLKFSAPTQGLLQESFRADV QKTPDPSSFAFNRR
Sbjct:    1 MKRVLACLLVTSAATGGMAFQLMASSSSSR-APTQMKASASESVSRRALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGQQPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVIGAKSEAKGKRDYR----YVDLKFSAPTQGLLQESFRADVAQKTPDPSSFAFNRR 223
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BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: A0A6H5KNY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.010e-10
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:    1 MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALLEKA 53
            MKRVLA LLV SAATGGMAFQLMASSS SR +PT MKAS SE +SR ALLEKA
Sbjct:    1 MKRVLARLLVISAATGGMAFQLMASSSRSR-SPTQMKASASEIISRRALLEKA 52
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: A0A7S0LSG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSG3_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 9.770e-8
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 0 
Query:  100 VSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVVGTKSVAK-----GKRDYRRELLYVDLKFSAPT 201
            VS  +P  WT+    G +I+++D++ +D AF L+  LP G K+   +  SFF   +F   G YG++G VDD KV+ +   A      GK+ YRR    + LKFS  T
Sbjct:  114 VSFAFPPAWTLA--GGPNIDVRDVRESDSAFLLSAKLPEG-KTFEQLHDSFFLSVVFDPQGKYGSYGTVDDRKVLSSDLAALTLPSGGKQTYRR----LALKFSPLT 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLZ3_ECTSI5.570e-13492.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNY8_9PHAE2.010e-1081.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0LSG3_9EUKA9.770e-837.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..228
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.575

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1070contigEcto-sp13_S_contig1070:10822..17407 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1070.645.1mRNA_Ecto-sp13_S_contig1070.645.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1070 10822..18732 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1070.645.1 ID=prot_Ecto-sp13_S_contig1070.645.1|Name=mRNA_Ecto-sp13_S_contig1070.645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALL
EKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGKEPIAV
SVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSF
FTDALFSLDGPYGTFGKVDDFKVVGTKSVAKGKRDYRRELLYVDLKFSAP
TQGLLQESFRADVVQKTPDPSSFAFNRR*
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