mRNA_Ecto-sp13_S_contig1070.645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1070.645.1
Unique NamemRNA_Ecto-sp13_S_contig1070.645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: D8LLZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ3_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 3.500e-127
Identity = 212/228 (92.98%), Postives = 216/228 (94.74%), Query Frame = 1
Query:    1 MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGKEPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVVGTKSVAKGKRDYRRELLYVDLKFSAPTQGLLQESFRADVVQKTPDPSSFAFNRR 684
            MKRVLA LLVTSAATGGMAFQLMASSSSSR APT MKAS SES+SR ALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSG++PIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKV+G KS AKGKRDYR    YVDLKFSAPTQGLLQESFRADV QKTPDPSSFAFNRR
Sbjct:    1 MKRVLACLLVTSAATGGMAFQLMASSSSSR-APTQMKASASESVSRRALLEKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGQQPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVIGAKSEAKGKRDYR----YVDLKFSAPTQGLLQESFRADVAQKTPDPSSFAFNRR 223          
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: A0A6H5KNY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.550e-9
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALLEKA 159
            MKRVLA LLV SAATGGMAFQLMASSS SR +PT MKAS SE +SR ALLEKA
Sbjct:    1 MKRVLARLLVISAATGGMAFQLMASSSRSR-SPTQMKASASEIISRRALLEKA 52          
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Match: A0A7S0LSG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSG3_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 9.810e-7
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  298 VSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVVGTKSVAK-----GKRDYRRELLYVDLKFSAPT 603
            VS  +P  WT+    G +I+++D++ +D AF L+  LP G K+   +  SFF   +F   G YG++G VDD KV+ +   A      GK+ YRR    + LKFS  T
Sbjct:  114 VSFAFPPAWTLA--GGPNIDVRDVRESDSAFLLSAKLPEG-KTFEQLHDSFFLSVVFDPQGKYGSYGTVDDRKVLSSDLAALTLPSGGKQTYRR----LALKFSPLT 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1070.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLZ3_ECTSI3.500e-12792.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNY8_9PHAE1.550e-981.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0LSG3_9EUKA9.810e-737.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1070contigEcto-sp13_S_contig1070:10822..18732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score383.3
Seed ortholog evalue8.2e-104
Seed eggNOG ortholog2880.D8LLZ3
Model size2012
Hectar predicted targeting categorychloroplast
Exons7
EggNOG OGs2EWBM@1,2SY6C@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002220.1
Cds size687
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1070.645.1prot_Ecto-sp13_S_contig1070.645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1070 10822..17407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.2059286-CDS-Ecto-sp13_S_contig1070:10821..109821681462548.2059286-CDS-Ecto-sp13_S_contig1070:10821..10982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 10822..10982 +
1681462548.2229517-CDS-Ecto-sp13_S_contig1070:12183..122891681462548.2229517-CDS-Ecto-sp13_S_contig1070:12183..12289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 12184..12289 +
1681462548.2399042-CDS-Ecto-sp13_S_contig1070:13695..137711681462548.2399042-CDS-Ecto-sp13_S_contig1070:13695..13771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 13696..13771 +
1681462548.2510328-CDS-Ecto-sp13_S_contig1070:14559..146931681462548.2510328-CDS-Ecto-sp13_S_contig1070:14559..14693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 14560..14693 +
1681462548.2672942-CDS-Ecto-sp13_S_contig1070:15403..154981681462548.2672942-CDS-Ecto-sp13_S_contig1070:15403..15498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 15404..15498 +
1681462548.2755845-CDS-Ecto-sp13_S_contig1070:15846..158921681462548.2755845-CDS-Ecto-sp13_S_contig1070:15846..15892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 15847..15892 +
1681462548.2838147-CDS-Ecto-sp13_S_contig1070:17338..174071681462548.2838147-CDS-Ecto-sp13_S_contig1070:17338..17407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1070 17339..17407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.2918022-UTR-Ecto-sp13_S_contig1070:17407..187321681462548.2918022-UTR-Ecto-sp13_S_contig1070:17407..18732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1070 17408..18732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1070.645.1

>prot_Ecto-sp13_S_contig1070.645.1 ID=prot_Ecto-sp13_S_contig1070.645.1|Name=mRNA_Ecto-sp13_S_contig1070.645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MKRVLAYLLVTSAATGGMAFQLMASSSSSRRAPTSMKASGSESLSRLALL
EKASVAAVAGAVALTGVAGEASAGTARPSARNLAETSIELNGSGKEPIAV
SVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSF
FTDALFSLDGPYGTFGKVDDFKVVGTKSVAKGKRDYRRELLYVDLKFSAP
TQGLLQESFRADVVQKTPDPSSFAFNRR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1070:10822..18732+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1070.645.1 ID=mRNA_Ecto-sp13_S_contig1070.645.1|Name=mRNA_Ecto-sp13_S_contig1070.645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7911bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1070:10822..18732+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGGGTCTTAGCGTATCTGCTCGTCACCTCTGCAGCTACAGGCGG GATGGCGTTTCAGCTGATGGCTTCCAGCAGCAGCAGCCGTCGAGCCCCTA CTTCGATGAAAGCATCTGGGTCCGAGAGTCTCTCTCGGCTGGCGCTTTTG GAGAAAGCAAGGTGCGTTCTGCACGTGCTCACATGTAGAGGTATTCTCAC GGCTTGTGCGCATGTTGCAACGAGACATGGATGTGATTGCCTTGACTAGC CTTCACTACTAGCCTTGACTACCAATTTATCATGAATCGTGTGCGCATGT TTTGACCAACATGACAATTCAAACGGCGGAGCCCCGCATGTGATCTGTGC AACTCATCGGCGCGTGGCTCGTGCCGCGGAGGATGGATGCTTGTGTTGCC CTTTATTGAGGAGAAATCCGCCGGAGGTACTCATGCCAGTACTCAGCTTT TGGGGTGTTTGTTTGTTTTTGACGAGACGCCAACCCGTGTGGTCCAATGG GCTGTTAAGTGACGCAGCAGGCCTGTACCCGTCAGTATCTTTGATGTACA CCCATCATGTTTACTCCTTCTTCAGTGTCAGTGTTCAGCGAGAGGGTTCT CTCCCTGTTGTGTGTAATTTCAGCTGTGCTTGCTGCAACTATTAGCCAGC GATCGAAGTTTACCGCCGTTCCAAGGTTGCTACCTAGCGGTAAATATCGC CACCTGGGTTTTTCCCTCCGAGGCTCAAATCGATACACAAGCACCTCCGT GGTACGAAGGATGTGGTTGATGCGAAACACAGCACAGTAGCAGCTGTGGG GGCAACAAGAAGCTGAATAAAACTCCGCACAGCCCCGAACAAAGTAACGC TGCTTTCTCTCTTCAACAAAGGGACCCGACACTATGATTGGCAACGAAAC CGGGTAGAGGAATACGTACAGCGTGTTCTCCCGGGTGGCGACGGCATCTG CGGGATGCCTACATGTGATGGCATACCGCCGGATGGCGCGCACCCTTCTG AACCAGCGGTGCGGGCAGCGCAGGATAGAGGCGCTTCCGAAATAACGCCG AGTTTACGCCCACTTGATGGCCAAGAGCAAGGACTATTTACGTGGGAGAT GCAACAATCTCCCAGTCCTTCTCTTTCCCCCCCTCTTCCCCTTCTTCTCT TGTACGTGTTGTACCTATACATGTCCCAGCCTCTAGTTTTTTTTGCACAT GAACACCTCCCCTTATCGAACTCCTCCCCCGCGCTCCTTTTGGCTCCGCC GCTACGTCGCTTGCTTCCTTCTTTTTCTTCGCGTGTGCGGCGGTCGATAA AAATCACCGCACGGCGGTGATGCGCGTGTCTGTCTATTGCTGCGACGGCG ATGATCTTGCAGCGTAGCTGCCGTGGCGGGGGCCGTGGCGTTGACCGGTG TTGCGGGAGAGGCATCGGCCGGCACCGCTCGACCGTCGGCCAGGAACTTG GCGGAAACCTCGATAGAGGTGAGGCGAATGAAAGACGCACCTCGAGACTC TCTTTTTCTTGGTGTGTTATTCGAAGGACTACTGTACGAACTGGCGTCGC CCGTTTGATCTGGGTCACAGCCGTTCGATGTGTGCGTGTATGTGTCTTTA TTGTTTTTAATAGGATCGACCGCGATAACTGGCTGACCATTGAAAAGACG TCAGTATTAGTGCGGTTGAAAACACGAAACAGTTCTATCTGCCGTGAACT GGGACCCCGTGAGGGGCGTGTATGTGTGTGTGTGTGTGTGTGTCTTTTCT TAGTTAGGGTCGACCGCGCTCACCTGCTGACCAATGAAAAGACGTCAGTG TTACTGAAGCGGAATGTCATCCGAACACTTGCTAATCAAAGGGGAAGGGT CCTACTGACATGGGGGGCGCGGAGTTGGATTAGTGTGTGTGTGCGTGCGT GTTCCTTTAGATAGCATCAACCGCGCGTACCGGCCGACCAACGGTAAAGA CGCCTGCCCCTTTTATGTGTTTCATCCCATTTTTTTAGATGGTTCCTAGT TACATGTTTTGGTGTGTTTTCATGTTTCGGTGTGCTTCCGGACCCACCCG CCTGGATTACACGCAAACGCGGATCGTCAAATAGCCCGGTGACTGAGTTC CCGACCAATGCTGAGTGAACTACCTACATGGAGCGGCTTGCTGGGAGAAG GGAGCTCTCGCTTTTGTGGTCACAATTTGCTCATATGTACTACGATTGCT GTGTTTGCTATGTTACTATTGGCTATTGCTCTCGTCCGCTGTTGAACGGT GGTGATCGGGAAATCGTTCGCACGATCTACGCGGTAATCTGAACCCCCTT ACGTGTCGGCCTTTACCTGAGAACGAGGCGTGTGGTGCGTCTGACCTTAA GAAGAGAACGCCCGCTGATTCGGCAGAAGGGTCGAACGGAAGACGGGCCG ATGCGAAGCTGCTTCTACTGCATCAACCTAGAAATTGCTGCGGGCTGTGC ACTCACTACGATAGTTGTGCGGATCAGCCCAAGAGAGATAGTCGAGATGG AATTCCAGCCCTGACGCATCGGGTTCTCGGGAGAGTGGGTAAAGACCCAG GAAAAGCCACAAGGGAAGGAAGCAATGTTCGTGGGACTTAGACTGGTGTA TCCGTCTCAGGAAGGAAGCAGAATACGAAAAATCATCAGAAACATGTCGC ATGTAGCACCGATTAACACTTTCCTTTTGTGCTAGCTCCACGGCTGCTGC TACTGCTGCGAAGAGAGGTGGACGGAACTATGTATATGTTTCGGAAAGAG GGGATGCGTGGTCAACGAGCCACCAAACGTCAGAGGGGTGCGAGCTGCCA CCGTGTCGTCGATGTGTTTGTTTATTGTTTGTTTACTTCCGTCCTTGCTT ATTTTTTTCGTACTTTTCCGGTAGCTCAATGGAAGCGGGAAGGAGCCCAT CGCGGTCTCAGTCCTATACCCGAAGCAGTGGACCGTCACCAAGACTGCAG GTATTCAATAGCACGCCTCGTCCGTGTGTGCCGGTGTCTCTGTTGTTGAT GTAGCATCGAATGCGCTGAACGGCCGACCAATGAAAAAGACGCCAGTCTC AGTGCGGACAAAGACGGGAAACGCTCTTCTCCAAAGGCCTTAATCTGGGA TGCCGTGCGGGGGGGGGGGGTCATATAGGAGGCTAGGATATTCTTCGGAT GTGCGTTTGTGTCGCTCTGCGCGTGTCTTGTGTTTCTTGGATCATCATCG ACCGCGCTCACCTCTCAATCGATGAAAAGACGCCAGTCTTGTGGATGAGC TTTGGTTTTCGTTGTGTTGTGTTTGTTTTGCGATGTGGCATCGGTGTCGT GGATATTGCGTGTTGTGCTTAGACGTTACAAGCACGCGCGTGTTTGTACG CGTTTCGTGCGTGCGCTGCTGAAATTTTTTTCTTGTGTTTGTTGTTGATT GCATTTGTTTGTGTTAACGGGCGATGCTACTATGCATGTTCCCCACGTTT TCGCTATGTGCGTGTGTCCCTTGCCGCACGACTCTGGGGATGGTCGAGAG TGAAGGTTTTCTAATAGTACTCCCGGATGCCTGGACCGATCTCTACTGGT CCATCACATGTTCGACGCCGCTGACGCTGGTGCTAAGCGAAGACAGCAGT TTGGGCGAAATACCAAAGGCTGATGGCCACCTTCGTGGCACAACAAACCG ATCGCTGCATTCTGTCCGATTTTCGCTCAGATATTGACAATATCCTAGAA ACCCAGTGACCCACCCCATCACTCCGCCCCGCCCACAGGGAAGAGCATCA ACATTCAGGACATGAAGTACACGGACAGGGCGTTTTCTCTTGCGATGCCG CTGCCTAGCGGCACGAAGAGCGTGGGTGACATCCCCTTGTCATTCTTCAC GGACGCCTTGTTCAGCTTGGATGTGAGTTTGGCCAATGCACGATGAAGGG GGCGGGGCACGAAAGGGGGCAGAGTAAAAGAGACACAGAGGTGAGGTGGG CATAGATAGAGAGGGATCAACGGAGAAAGAGAGAGAAAAGAGAGGTGCAT CATCGCATGCAAGACATTTAGGTGCCCGGTATTCGTGCGGTGTCTGGAGG AGAAAGGGATATTTATAAAAGGAAAAGGCCAGAATTGGTGTTCGATAAAC CCCGGGGGCTCTTGAACAAAGCTGTCGTTTCGTGTTTGTGGTGAAAACAT GCGTCTAATGAAAAGAACAGATAGGGGACAGAATGGGGCGGCCCACCCCG CCAGAAGAACACGAGAGGAACAACAAACTCGTGCTACATGGCGTGCTTTC GATCGGCTGGGCTGAGCATGCTACCGTAGCCGTGCCATACTTGAAATCGC CTGACGTTCGTTCCCTTCGAATCGTGTCTGGTGATGGTCGTTTTCCGCGT GACGCCGCTGAATCAAAAATACACACCACAGAGTCAAAGGGCTTAGCGTA AGTGTCATCATGCTGCGTCAGTCACAGAGAGGGCCACTTCATTTCGTGCG CGCGTGGCGGCTCTTCTTGTGTCCGTGAGGTGTGGGTGCGCTCTTCATGT GTACCCGTCAGCCTCGTGGCTGTGTGTGCGTGACGTTTCATTCTGCTTTG TGCTGCTGCTTGTACCCTCTGTTTCAATACAGGGGCCCTACGGCACCTTT GGCAAGGTCGACGACTTCAAGGTCGTCGGGACTAAGTCGGTGGCTAAGGG GAAGCGAGACTACAGGCGAGAGCTCCTGTGTTGTGGCGGCGATGTTGATG TTGTTCCCCTTTACCGTAACCTTCCCTTGTTGTGGCCCTTGTTGCCGGTG GTGGTCAAGGTACAAAAGAAAAGAAAAATGAAGATAAAAAACACTCTGTG GCGGAGCTGTTGTAGTCGATCTTGACGTATGTAGGTGTTGATCTTACACA TGGTTGAGAGGCGCAATGGTTGCTGGCGAGATTGGTGCGGTTCTGGTGGT TGTTTCTGGGACGCGCATTCTCTCTGACCCCCATCTTCTTAGTGTGCCTC CCCGCCCTGTCCGTGATCGAACCGTTTCACCTTCGTGACCGCTTCTGATG CTGCGGGTTTCTGCTCCCCCTGCAGGTATGTAGACCTCAAGTTCTCGGCG CCAACTCAAGGGCTTTTGCAGGTGAGAATCCCCGCTGGGAGTTTTTTTTT TTCTGGTGATTCCGGGCGCTACAACTGCAGCAAATGCCGAACGACGATTT AACCTGTCAATTCACGCATTTGTTTGCTGCTCAAGTATTCGTATTGAAGT TTTTTTACTTTGCTTCAGCTTCCTGTCGGGAGTTTCAAAATTGATATTCG CTTTGTTGCGATGCACGAGCGGGTGTTCAAAATGTTGATATGCTCCGTGG GTTGAGCCACTCAGGAATGCGTTGCTTTTGGCTTCATCGGATGTCGACAG CAGTGTTCGAATTCCGTGACACAGAGCGGTTACAACGAAGCAGGACGGCC GTGTAGATTCCGCCGTTTTTGTTGTCGAAAGAGAGCGCATACATCCTTGG CTTGGCCAGTGTTCAGACACTTTATGAGGAGAAAGAGCGACCGCGTTGCG CTCTGTACCGGTCGGATGGGACGGGATGATGAGAACCGCTCAACGTTATT AGCAAGGTCTTTTTCACAGACGGCGGCGACGGCGAGAGTGGCGGATAACT CTGCTGTAGCACCACCCTATCGTTACCTCGTGGTGACGGTCTGGATGGAG TGCACCACCACCTCTTCTTGGAGTTGCGGTACCGTAGGTGCTCCTACCAC CCCCTCATTTTCTCTTGCCCCTAGACGAGACATTTTCGACGGAGTACTTC TCACGCTCGGTGACTCGTTCGAGTCTGTCGAGAAGGACGAAGAGAAACCC AGTGATGCTTTTCGCCTTCCCCACCGTTTTTTTCTATTTTGCTATCTTTT CGCACGCTTCAGTGGTCCTCTTACAGACGTCCCCGCCCCCCTCCCCCGCT TGCTCATCGCCGTAGGCTTTAAGGGTTGACACTATCGAAGAACAACCCAA ACATTATGGTGCCCAAACCGAACCCGCAGGTTGAGAAGAGGGGTTGCGTG GCGACGACGATCGTCGACGGTGACGTTGTCCTGTTCACGGCGAGCGTGCT GGCTTCTCGGTGGCCGAAGATCTCTCCCGTCGTAGCGGAAATGATCGTAA GTCCTCGAGAGTTCTAGCAGAGCCAATGATCACTCGCCACCACCGCGCCC AAAAGCTGTCCCTCCGCTATGTGTTGTAGAATTTGCTTTTTTTTTTTATC TTTTGGCGTCACGTGTACCACACGTCACGCGCTAGGCACAATCATCCCCC GGCGGTGCAGAGGGTAGTGGAGATCCGTGCGTCGTTTGGGTGATGGAGCA ATCGTCGTGCCGCGAAGCGAATCTGAGACAATCAGGTTTTGATCCAGCGT TTTACTCGCCGCCGCCGCCGCCGCCGCCATCTCCGCCGGTTGGCCTTTTG GTGTGCTCCCTCCCCGGTTGGTCTCTGATTCTGGTGTCCGTCGCCGGTCT CTATTTGTGCAGATGTCTCACCCCCCCCCCACCCCACCCCCCAACGACAC CCTTGTGTTTCCAACAGGAGAGCTTCCGTGCCGATGTGGTCCAGAAAACT CCCGACCCCAGCTCCTTCGCCTTCAACCGGCGCTAAGAGATCAGGGCCAA GTGTGCTAAATTTCCACCGATACCACCCCCTAAAACCTTCCACACTGACA CGCGTGCGTGCTCCCGCCGACACGCCGGTACGGTGCACTCTGCTTAAGCG GCGTCGCGTCGCAACCCACCGTGAGGGGGGAGGGGTCACGGAAACTCGAC TCTCGCTTCTTGGTTGAGAGTCCGTTCGCTGGTGGTTCGTGTGCGTGGTT TTTGCAGCCTGTCCCCTGCTTTTGCTCTTTACACCGCTTATAGTAAAGGG GGGGCGGTAGGTCGGCACGACCGTACCGCCACTAGCAAGCTTGCTTTTTT CAGGCTTTCCTATCCGCAGGGGGGCACTGCCTGGCGACTTGGTTCTCGAT CTGTTTGTGGGCGTATTAGCGGCCTTTAAAAGTTGTTTTCGTCTTTGGCG TTCAGTCCATGCACATTGAAAGCGTAATATTTGCACATGCGACGAGGACT CTTCCATTCTTCCGACGCCGCTCCCGGTCAAAAACTTTTTTTTTGTCAAG ATGGGTGCGTCAATTTGGGTCCTTTCGCAATGATGGCTTGCTGGGTGGCG AAGCTTGGGCGGCTGGCAGAGCAAGAGGGGGAGGAGTTGCGTAGCGGTAG AGAAGCTTGTCTCTTTGTTCGGGATTTCTATGTCGATTGGCACACATTGG GGCCGGGGGGGTTCTGTGTTGGCGTAGACCCACTTCTGTGCGCTTAGTTA GAGATCGCAGCAGCACCGCTTCAAGCTCAGCAGCTGAGACACATGGGAAG GCGCGCGGCGCATATTTGCACGAAGCGATAGACTAGAGCTTCGAAGGGTG GAAGCCATTGGAGGTACAAGTAGATGTAGGTGACGCATTAAGGCGTACAC AGCAAGTTGTCTCTTGTCTGGAACGCGACGAATATTCTAACAGTTAGAGA AGGTTAAGTCTAGACAGAGGCAGCGGCATCAGACGGGGTACGCGTCACGG AGATGCTAAGAAAAAAGCAACAGAGACGTATGCTTACGATTGTTGCGCAC ACTTTTCTGTTCACAGGGCGAGCGACCCTTTTGCCTAAAACATGTTTTCG TTCTCGAGGCTAGCTCGTTGTTTCCTCTGTGGGCAAATCAATGAGGACTG AAGTATATGAGGTTTCAAGTGTTGGTGGGACAGGGTTCAAAAACCCTGAA TACCACGAAGAACCCTTTTCTGTATTCCGTGTCACGTGCTGGCACCCGTT TCGTCCCTTGGCCACAGATTTACTGCCCGTAGTCATGCAATCCAGGTCTG TTTGGAAGAGGGTACGTGTGCACTACAAACCACACCGACTCCTTCTCCTT ACACGATGCCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1070:10822..18732+

>mRNA_Ecto-sp13_S_contig1070.645.1 ID=mRNA_Ecto-sp13_S_contig1070.645.1|Name=mRNA_Ecto-sp13_S_contig1070.645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1070:10822..18732+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGGGTCTTAGCGTATCTGCTCGTCACCTCTGCAGCTACAGGCGG
GATGGCGTTTCAGCTGATGGCTTCCAGCAGCAGCAGCCGTCGAGCCCCTA
CTTCGATGAAAGCATCTGGGTCCGAGAGTCTCTCTCGGCTGGCGCTTTTG
GAGAAAGCAAGCGTAGCTGCCGTGGCGGGGGCCGTGGCGTTGACCGGTGT
TGCGGGAGAGGCATCGGCCGGCACCGCTCGACCGTCGGCCAGGAACTTGG
CGGAAACCTCGATAGAGCTCAATGGAAGCGGGAAGGAGCCCATCGCGGTC
TCAGTCCTATACCCGAAGCAGTGGACCGTCACCAAGACTGCAGGGAAGAG
CATCAACATTCAGGACATGAAGTACACGGACAGGGCGTTTTCTCTTGCGA
TGCCGCTGCCTAGCGGCACGAAGAGCGTGGGTGACATCCCCTTGTCATTC
TTCACGGACGCCTTGTTCAGCTTGGATGGGCCCTACGGCACCTTTGGCAA
GGTCGACGACTTCAAGGTCGTCGGGACTAAGTCGGTGGCTAAGGGGAAGC
GAGACTACAGGCGAGAGCTCCTGTATGTAGACCTCAAGTTCTCGGCGCCA
ACTCAAGGGCTTTTGCAGGAGAGCTTCCGTGCCGATGTGGTCCAGAAAAC
TCCCGACCCCAGCTCCTTCGCCTTCAACCGGCGCTAA
back to top