mRNA_Ecto-sp13_S_contig19877.6454.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19877.6454.1
Unique NamemRNA_Ecto-sp13_S_contig19877.6454.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19877.6454.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.190e-72
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   28 MSTASLMLEKNASSDWVINRMKGINWGDKPNVGHASLFQFFPGFYAAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLVEEYDFANTPAWLTKDIMGRNSMGPKILLEASNK 375
            MSTASLMLEKNASSDWVINRMKG NWGDKPNVGHASLFQF PGFYA MSVKESGKCYSE DRNAEAVKVYKSFAVPAFLRWLVE+YDF  TPAWLTKDIMGRNSMGPKILLEA+NK
Sbjct:    1 MSTASLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIMGRNSMGPKILLEAANK 116
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BLAST of mRNA_Ecto-sp13_S_contig19877.6454.1 vs. uniprot
Match: A0A6H5LQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQJ9_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.690e-69
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:   28 MSTASLMLEKNASSDWVINRMKGINWGDKPNVGHASLFQFFPGFYAAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLVEEYDFANTPAWLTKDIMGRNSMGPKILLEASN 372
            MSTASLMLEKNASSDWVINRMKG NWGDKPNVGHASLFQF PGFY AMSVKESGKCYSEP+RNA AVKVYKSFAVPAFLRWLVEEYDF NTPAWLTKDIMG NS+GPK+L   +N
Sbjct:    1 MSTASLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYVAMSVKESGKCYSEPERNAGAVKVYKSFAVPAFLRWLVEEYDFTNTPAWLTKDIMGSNSIGPKVLRPGAN 115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19877.6454.1 vs. uniprot
Match: A0A6H5KJ61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ61_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.790e-48
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:   28 MSTASLMLEKNASSDWVINRMKGINWGDKPNVGHASLFQFFPGFYAAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLV 276
            MSTASLML+K ASSDWVINRMKG NWGDKPNVGHASL QF PGFY AMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLV
Sbjct:    1 MSTASLMLDKEASSDWVINRMKGSNWGDKPNVGHASLSQFLPGFYVAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLV 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19877.6454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUY0_9PHAE1.190e-7293.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQJ9_9PHAE1.690e-6988.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ61_9PHAE2.790e-4892.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19877contigEcto-sp13_S_contig19877:487..2122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size447
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.1704254-UTR-Ecto-sp13_S_contig19877:486..5131681463002.1704254-UTR-Ecto-sp13_S_contig19877:486..513Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19877 487..513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.1901615-CDS-Ecto-sp13_S_contig19877:513..8621681463002.1901615-CDS-Ecto-sp13_S_contig19877:513..862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19877 514..862 +
1681463002.1994202-CDS-Ecto-sp13_S_contig19877:2051..21221681463002.1994202-CDS-Ecto-sp13_S_contig19877:2051..2122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19877 2052..2122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19877.6454.1prot_Ecto-sp13_S_contig19877.6454.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19877 514..2122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19877.6454.1

>prot_Ecto-sp13_S_contig19877.6454.1 ID=prot_Ecto-sp13_S_contig19877.6454.1|Name=mRNA_Ecto-sp13_S_contig19877.6454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MSTASLMLEKNASSDWVINRMKGINWGDKPNVGHASLFQFFPGFYAAMSV
KESGKCYSEPDRNAEAVKVYKSFAVPAFLRWLVEEYDFANTPAWLTKDIM
GRNSMGPKILLEASNKAHRENSTLKPRRRSGVQDSGMSC*
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mRNA from alignment at Ecto-sp13_S_contig19877:487..2122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19877.6454.1 ID=mRNA_Ecto-sp13_S_contig19877.6454.1|Name=mRNA_Ecto-sp13_S_contig19877.6454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19877:487..2122+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCCAAGTGCAGCACGGGCACTACCATGTCAACCGCCTCTCTTATGCT
AGAGAAGAATGCTAGCTCCGACTGGGTGATCAACAGGATGAAGGGCATCA
ACTGGGGCGACAAACCGAACGTAGGCCATGCTAGTCTGTTCCAGTTCTTC
CCGGGGTTCTACGCTGCCATGAGCGTGAAGGAGAGCGGCAAATGTTACAG
CGAGCCTGATAGAAATGCAGAGGCAGTCAAAGTTTACAAAAGCTTCGCTG
TGCCGGCATTCCTTCGCTGGTTGGTAGAGGAATACGACTTCGCCAATACC
CCAGCTTGGCTCACGAAGGACATCATGGGCCGCAACTCGATGGGACCTAA
AATCTTGCTGGAAGCGTCCAATAAAGGTGATGAATGGATGGCAGCTACGA
TGCTTGTGCAATGCGCTTGTTCAGAAGTTACAGCAGTAGGTCTACCTAAC
TGAGCCAACTGAGCCAACATCGCAACGTGTGCCCTGGTGGGAATTGTACG
GAGTGTCGTGTACGCCACCTTGACGAAGAGGATGCATCCAATCGAAACGA
GGTAGTAGTCGGAAAGCTCTCGACGAGATGATTCCCGCACCGCCATTTCC
GCCACCACCACTGTGTGTGCTGTGAAGCAATCGAGCTTTGAAAATTTTTC
TGGGGTGTGTGTAGTATCTCATGCCACCTACAAGATCACGGTATCGGAAG
CAGAAATCAATTCGCCGTACCGTAGTCTACCACAACCGCCGTAGGCCCTC
TTCCTCTCCCTCCTCGTATTTTGACGCACACAAAAGGACAAAAGGATCAT
GACAGCCAGTAGTTTATTTTCACACCGAACGACAAGGCAAACGGCGAGTG
TGCTCTCGGTTCAGTCTTGTCGGCGATTTCAATGCTGCAGCGTTCTAGCC
GGCGTATGTTGGGTGTGTCTATTCAGTTGGCATCGACCGCGCTAGCCGGC
TGACCAATGAAAATACGTACTTGTAGTCAGTCTTGAAGAAGGGAAAAAAC
ACAAACAAATTCCAATCAAAGGCTAAGGATTCTACGGACATGGGGGGCGC
AAGCAAGTGGGCAACAGATTCCTGCTTCGGAAGCACAAGGAGATTTCGTG
TGTGTCTTTATTATTGTACGAAACGCGTTACGTGTCCTCTTCCTCGCTCT
CTCGTATCTTTCTGTCGCGGTTGTCTTCCTCTAGCCTCTCGCCGCAGCAG
GCGTTTTATTTTCGCGATGTACACACAACGAAGATTTCCAAAACAAGCTT
CGTTGGGGTGTGCAATGTGTGTAAAGTTGACTACACAAAATACATCTCCC
CGGTCGGAGTAGGAAGGGTTGCGAACCCCATGTGGAAATTCCGTGCCACC
GTCACCCCTCCGTAGGTGGCGGATGTTGTATTCCTTCTTCGTGGAAGAGG
GAAGGTGACATGTGTTGTAGAGCGTTTTGCTACATACCCAAGTCGAGTTG
TTCCACAGGAGGAATGGGCATCGCAGCATATTTCCCTGCATACAATAATT
AATCGCGCGCCCCACCGGTCACGGTTGCAATGTGCCTCGCCCGTGTGCTC
GTCCGTCCGCGCAAGCACACAGGGAAAACTCTACGTTGAAACCGAGGCGT
CGCTCTGGCGTACAAGATTCGGGGATGTCTTGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19877:487..2122+

>mRNA_Ecto-sp13_S_contig19877.6454.1 ID=mRNA_Ecto-sp13_S_contig19877.6454.1|Name=mRNA_Ecto-sp13_S_contig19877.6454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19877:487..2122+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAACCGCCTCTCTTATGCTAGAGAAGAATGCTAGCTCCGACTGGGT
GATCAACAGGATGAAGGGCATCAACTGGGGCGACAAACCGAACGTAGGCC
ATGCTAGTCTGTTCCAGTTCTTCCCGGGGTTCTACGCTGCCATGAGCGTG
AAGGAGAGCGGCAAATGTTACAGCGAGCCTGATAGAAATGCAGAGGCAGT
CAAAGTTTACAAAAGCTTCGCTGTGCCGGCATTCCTTCGCTGGTTGGTAG
AGGAATACGACTTCGCCAATACCCCAGCTTGGCTCACGAAGGACATCATG
GGCCGCAACTCGATGGGACCTAAAATCTTGCTGGAAGCGTCCAATAAAGC
ACACAGGGAAAACTCTACGTTGAAACCGAGGCGTCGCTCTGGCGTACAAG
ATTCGGGGATGTCTTGTTAG
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