mRNA_Ecto-sp13_S_contig19872.6452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE) HSP 1 Score: 286 bits (731), Expect = 2.620e-88 Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 1
Query: 1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELV 450
RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARD+LRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLA LVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPG L+
Sbjct: 407 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDELRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLAALVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGGLL 556
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC) HSP 1 Score: 145 bits (367), Expect = 2.160e-38 Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = 1
Query: 25 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 456
++GITVVSAFEGYAFDAGMR GD + A++ PV+G +V++ RD LRG PN++V + F R G T+QE+ LTRRLV++ DVKL + +G +++ +GY+QLSGFS A E + A L A GL+G+ILD+R NPG L+ S
Sbjct: 19 REGITVVSAFEGYAFDAGMRVGDSLEAVDDVPVKGRSVDQVRDLLRGPPNTQVKVRFTRAGLPGPTQQELLLTRRLVRVPDVKLTSFLGPLRDG-IGYIQLSGFSQNAPAEFRFALELLRLHAPQGLQGLILDLRNNPGGLLTS 161
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.170e-35 Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 1
Query: 34 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSN----GQTEQ-EITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 456
I VVSAFEGYAFDAGMR GD + ++ G +EG+TV+ RD LRG P+++V + F R+ N G + E+ L RR+VK+ DVKLATLVG + VGY+QLSGFS A ++L A LD A GL G+ILD+RGNPG L+ S
Sbjct: 221 IQVVSAFEGYAFDAGMRPGDTLVSVGGTSIEGLTVDSVRDLLRGSPDTEVPVRFTREGVNLDGKGVPQPLEVILKRRMVKVSDVKLATLVGSPADG-VGYVQLSGFSPSAGKDLAAALHALDMTAPKGLSGLILDLRGNPGGLLES 365
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S2R3Y2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Y2_9STRA) HSP 1 Score: 130 bits (326), Expect = 4.440e-35 Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 1
Query: 7 ANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 456
A ++A + GI VV+AFEGYAFD GMR GD++ AI+G+ + + VE R++LRGEP +KV I+F+R G+T ++++R++V++RDVKL TL+G +N VGY+QLSGF+ A +E++ A L +A E GG L+ +ILD+RGNPG L+ S
Sbjct: 28 ALKQAKEKGIRVVTAFEGYAFDYGMRVGDQLVAIDGQRITSTMNVEAVRNKLRGEPGTKVDITFMRVGVPGETT--LSISRKVVQIRDVKLTTLIGKPENG-VGYIQLSGFTANAGREVRGAILALQAATEEASGGQNSLQSLILDLRGNPGGLLTS 181
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1GGW4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGW4_CYCTE) HSP 1 Score: 129 bits (325), Expect = 1.140e-34 Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 1
Query: 25 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGIT-VEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 456
K GI VVSAFEGYAFD GMR GDR+ ++G + T VE R+ LRGEP + V ++F R+ G Q +T+ R +VK+ DVKLAT VGD K+ VGY+QLSGF+ +E++ + L AAE GG L+G+ILDMRGNPG L+ S
Sbjct: 72 KKGIQVVSAFEGYAFDYGMRVGDRLVGVDGTDITPKTSVEDVRNLLRGEPGTSVEVTFEREGVEGP--QTVTIPRTIVKINDVKLATFVGDPKDG-VGYIQLSGFASETGREVRNSILALQRAAEEASGGTRSLQGLILDMRGNPGGLLTS 219
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.170e-34 Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 1
Query: 16 EAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD------SAAEGGLRGVILDMRGNPGELVRS 456
+A K GI VVSAFEGYA+D GMR GDR+ AI+G+ + +T E R++LRGEP + V ++F+RD G E ++L R LVK+RDVKLAT VGD ++ VGY+Q+SGF+ +EL+ A L S E GLRG++LD+RGNPG L+ S
Sbjct: 375 KARKQGIRVVSAFEGYAYDYGMRVGDRLMAIDGQLLTPTMTAEDVRNKLRGEPGTSVEVTFVRDGVEG--ENTVSLPRTLVKMRDVKLATFVGDPRDG-VGYVQVSGFAAETGRELRNAILALQRVAEDTSGGEAGLRGLVLDLRGNPGGLLTS 525
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC) HSP 1 Score: 135 bits (340), Expect = 7.650e-34 Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 16 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 456
+ GKD GI V+ AFEGYAFDAGMR GD + + G+PV ++ E+ ++ LRG P+S+V+++F+RD +G Q +TLTRRLV++ +VKL +G ++ +GY+QLSGFS + E++ A R+L +A GL GV+LD+RGNPG L+ S
Sbjct: 373 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNS 519
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC) HSP 1 Score: 133 bits (335), Expect = 3.260e-33 Identity = 71/150 (47.33%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 16 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 456
+ GKD GI V+ AFEGYAFDAGMR GD + + G+PV ++ E+ ++ LRG P+S+V+++F+RD +G Q +TLTRRLV++ +VKL +G ++ +GY+QLSGFS + E++ A R+L +A GL GV+L++RGNPG L+ S
Sbjct: 157 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLNLRGNPGGLLNS 303
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC) HSP 1 Score: 133 bits (335), Expect = 3.490e-33 Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 1
Query: 1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDS----AAEG--GLRGVILDMRGNPGELVRS 456
R A +A K GI VV+AFEGYAFD G+R GD++ AI+ KP+ TVE R+ LRG+P + VSI F RD + Q +T+ R +V+LRDVKLATLVG ++ +GY+QLSGF+ A E++QA YL A G L+G++LD+RGNPG L+ S
Sbjct: 338 RKALEKARKQGIRVVTAFEGYAFDYGLRVGDKLLAIDDKPLTADTTVEDVRNMLRGQPGTLVSIEFNRDGVDDV--QTVTMPRAVVRLRDVKLATLVGSPRDG-IGYIQLSGFTSNAGAEMRQAITYLQQRTLDATNGDKSLQGLVLDLRGNPGGLLTS 493
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1B4F4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F4_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.150e-32 Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 1
Query: 34 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEG------GLRGVILDMRGNPGELVRS 456
I VV+AFEGYAFDAGMR GD++ A++G ++G T E+ R LRGEP ++VS+ F RD G + +I RRLVK+ D+KL T +G+ K +GY+QLS FS E++Q+ L AAE GLRG+++D+RGNPG L+ S
Sbjct: 142 IRVVTAFEGYAFDAGMRPGDKLVAVDGTTIKGSTAEQVRLMLRGEPGTEVSVDFERDGVQGISNVQIP--RRLVKIPDIKLTTFLGEKKEG-IGYVQLSAFSGDTGAEMRQSILALQKAAERADPSAQGLRGLVVDLRGNPGGLLTS 285 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19872.6452.1 >prot_Ecto-sp13_S_contig19872.6452.1 ID=prot_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARback to top mRNA from alignment at Ecto-sp13_S_contig19872:1884..3107+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19872.6452.1 ID=mRNA_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:1884..3107+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19872:1884..3107+ >mRNA_Ecto-sp13_S_contig19872.6452.1 ID=mRNA_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:1884..3107+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |