prot_Ecto-sp13_S_contig19872.6452.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig19872.6452.1
Unique Name	prot_Ecto-sp13_S_contig19872.6452.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	160

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 2.620e-88
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 0

Query:    1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELV 150
            RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARD+LRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLA LVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPG L+
Sbjct:  407 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDELRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLAALVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGGLL 556

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC)

HSP 1 Score: 145 bits (367), Expect = 2.160e-38
Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = 0

Query:    9 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 152
            ++GITVVSAFEGYAFDAGMR GD + A++  PV+G +V++ RD LRG PN++V + F R    G T+QE+ LTRRLV++ DVKL + +G +++  +GY+QLSGFS  A  E + A   L   A  GL+G+ILD+R NPG L+ S
Sbjct:   19 REGITVVSAFEGYAFDAGMRVGDSLEAVDDVPVKGRSVDQVRDLLRGPPNTQVKVRFTRAGLPGPTQQELLLTRRLVRVPDVKLTSFLGPLRDG-IGYIQLSGFSQNAPAEFRFALELLRLHAPQGLQGLILDLRNNPGGLLTS 161

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.170e-35
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 0

Query:   12 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSN----GQTEQ-EITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 152
            I VVSAFEGYAFDAGMR GD + ++ G  +EG+TV+  RD LRG P+++V + F R+  N    G  +  E+ L RR+VK+ DVKLATLVG   +  VGY+QLSGFS  A ++L  A   LD  A  GL G+ILD+RGNPG L+ S
Sbjct:  221 IQVVSAFEGYAFDAGMRPGDTLVSVGGTSIEGLTVDSVRDLLRGSPDTEVPVRFTREGVNLDGKGVPQPLEVILKRRMVKVSDVKLATLVGSPADG-VGYVQLSGFSPSAGKDLAAALHALDMTAPKGLSGLILDLRGNPGGLLES 365

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S2R3Y2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Y2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.440e-35
Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 0

Query:    3 ANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 152
            A ++A + GI VV+AFEGYAFD GMR GD++ AI+G+ +   + VE  R++LRGEP +KV I+F+R    G+T   ++++R++V++RDVKL TL+G  +N  VGY+QLSGF+  A +E++ A   L +A E   GG   L+ +ILD+RGNPG L+ S
Sbjct:   28 ALKQAKEKGIRVVTAFEGYAFDYGMRVGDQLVAIDGQRITSTMNVEAVRNKLRGEPGTKVDITFMRVGVPGETT--LSISRKVVQIRDVKLTTLIGKPENG-VGYIQLSGFTANAGREVRGAILALQAATEEASGGQNSLQSLILDLRGNPGGLLTS 181

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1GGW4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGW4_CYCTE)

HSP 1 Score: 129 bits (325), Expect = 1.140e-34
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 0

Query:    9 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGIT-VEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 152
            K GI VVSAFEGYAFD GMR GDR+  ++G  +   T VE  R+ LRGEP + V ++F R+   G   Q +T+ R +VK+ DVKLAT VGD K+  VGY+QLSGF+    +E++ +   L  AAE   GG   L+G+ILDMRGNPG L+ S
Sbjct:   72 KKGIQVVSAFEGYAFDYGMRVGDRLVGVDGTDITPKTSVEDVRNLLRGEPGTSVEVTFEREGVEGP--QTVTIPRTIVKINDVKLATFVGDPKDG-VGYIQLSGFASETGREVRNSILALQRAAEEASGGTRSLQGLILDMRGNPGGLLTS 219

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.170e-34
Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 0

Query:    6 EAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD------SAAEGGLRGVILDMRGNPGELVRS 152
            +A K GI VVSAFEGYA+D GMR GDR+ AI+G+ +   +T E  R++LRGEP + V ++F+RD   G  E  ++L R LVK+RDVKLAT VGD ++  VGY+Q+SGF+    +EL+ A   L       S  E GLRG++LD+RGNPG L+ S
Sbjct:  375 KARKQGIRVVSAFEGYAYDYGMRVGDRLMAIDGQLLTPTMTAEDVRNKLRGEPGTSVEVTFVRDGVEG--ENTVSLPRTLVKMRDVKLATFVGDPRDG-VGYVQVSGFAAETGRELRNAILALQRVAEDTSGGEAGLRGLVLDLRGNPGGLLTS 525

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 135 bits (340), Expect = 7.650e-34
Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 0

Query:    6 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 152
            + GKD  GI V+ AFEGYAFDAGMR GD +  + G+PV  ++ E+ ++ LRG P+S+V+++F+RD  +G   Q +TLTRRLV++ +VKL   +G  ++  +GY+QLSGFS  +  E++ A R+L  +A   GL GV+LD+RGNPG L+ S
Sbjct:  373 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNS 519

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 133 bits (335), Expect = 3.260e-33
Identity = 71/150 (47.33%), Postives = 106/150 (70.67%), Query Frame = 0

Query:    6 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 152
            + GKD  GI V+ AFEGYAFDAGMR GD +  + G+PV  ++ E+ ++ LRG P+S+V+++F+RD  +G   Q +TLTRRLV++ +VKL   +G  ++  +GY+QLSGFS  +  E++ A R+L  +A   GL GV+L++RGNPG L+ S
Sbjct:  157 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLNLRGNPGGLLNS 303

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC)

HSP 1 Score: 133 bits (335), Expect = 3.490e-33
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 0

Query:    1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDS----AAEG--GLRGVILDMRGNPGELVRS 152
            R A  +A K GI VV+AFEGYAFD G+R GD++ AI+ KP+    TVE  R+ LRG+P + VSI F RD  +    Q +T+ R +V+LRDVKLATLVG  ++  +GY+QLSGF+  A  E++QA  YL      A  G   L+G++LD+RGNPG L+ S
Sbjct:  338 RKALEKARKQGIRVVTAFEGYAFDYGLRVGDKLLAIDDKPLTADTTVEDVRNMLRGQPGTLVSIEFNRDGVDDV--QTVTMPRAVVRLRDVKLATLVGSPRDG-IGYIQLSGFTSNAGAEMRQAITYLQQRTLDATNGDKSLQGLVLDLRGNPGGLLTS 493

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1B4F4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.150e-32
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 0

Query:   12 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEG------GLRGVILDMRGNPGELVRS 152
            I VV+AFEGYAFDAGMR GD++ A++G  ++G T E+ R  LRGEP ++VS+ F RD   G +  +I   RRLVK+ D+KL T +G+ K   +GY+QLS FS     E++Q+   L  AAE       GLRG+++D+RGNPG L+ S
Sbjct:  142 IRVVTAFEGYAFDAGMRPGDKLVAVDGTTIKGSTAEQVRLMLRGEPGTEVSVDFERDGVQGISNVQIP--RRLVKIPDIKLTTFLGEKKEG-IGYVQLSAFSGDTGAEMRQSILALQKAAERADPSAQGLRGLVVDLRGNPGGLLTS 285

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L981_9PHAE	2.620e-88	97.33	PDZ domain-containing protein n=2 Tax=Ectocarpus T...	[more]
I2CP28_NANGC	2.160e-38	52.08	Carboxyl-terminal protease (Fragment) n=1 Tax=Nann...	[more]
A0A835Z050_9STRA	2.170e-35	52.74	ClpP/crotonase-like domain-containing protein n=1 ...	[more]
A0A7S2R3Y2_9STRA	4.440e-35	47.77	Hypothetical protein (Fragment) n=1 Tax=Eucampia a...	[more]
A0A7S1GGW4_CYCTE	1.140e-34	50.99	Hypothetical protein (Fragment) n=1 Tax=Cyclophora...	[more]
A0A7S4IQW6_9STRA	1.170e-34	50.65	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A0G4F0N3_VITBC	7.650e-34	48.00	PDZ domain-containing protein n=3 Tax=Vitrella bra...	[more]
A0A0G4EX77_VITBC	3.260e-33	47.33	PDZ domain-containing protein n=1 Tax=Vitrella bra...	[more]
B7GBC3_PHATC	3.490e-33	49.69	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7S1B4F4_9STRA	3.150e-32	48.30	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001478	PDZ domain	SMART	SM00228	pdz_new	coord: 7..69 e-value: 2.0E-5 score: 34.0
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 1..54 score: 11.461
IPR005151	Tail specific protease	PFAM	PF03572	Peptidase_S41	coord: 104..150 e-value: 3.2E-6 score: 26.8
IPR041489	PDZ domain 6	PFAM	PF17820	PDZ_6	coord: 20..66 e-value: 5.1E-11 score: 42.3
None	No IPR available	GENE3D	2.30.42.10		coord: 9..87 e-value: 8.1E-27 score: 96.4
None	No IPR available	GENE3D	3.90.226.10		coord: 88..150 e-value: 8.1E-27 score: 96.4
None	No IPR available	PANTHER	PTHR32060	FAMILY NOT NAMED	coord: 7..150
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 74..147
IPR036034	PDZ superfamily	SUPERFAMILY	50156	PDZ domain-like	coord: 9..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19872	contig	Ecto-sp13_S_contig19872:1884..3107 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19872.6452.1	mRNA_Ecto-sp13_S_contig19872.6452.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig19872 1884..3107 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig19872.6452.1 ID=prot_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKAR
DQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVK
NAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELV
RSRKYRGRS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ
IPR005151	Tail-specific_protease
IPR041489	PDZ_6
IPR029045	ClpP/crotonase-like_dom_sf
IPR036034	PDZ_sf