mRNA_Ecto-sp13_S_contig19872.6452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19872.6452.1
Unique NamemRNA_Ecto-sp13_S_contig19872.6452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 2.620e-88
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 1
Query:    1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELV 450
            RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARD+LRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLA LVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPG L+
Sbjct:  407 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDELRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLAALVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGGLL 556          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC)

HSP 1 Score: 145 bits (367), Expect = 2.160e-38
Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   25 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 456
            ++GITVVSAFEGYAFDAGMR GD + A++  PV+G +V++ RD LRG PN++V + F R    G T+QE+ LTRRLV++ DVKL + +G +++  +GY+QLSGFS  A  E + A   L   A  GL+G+ILD+R NPG L+ S
Sbjct:   19 REGITVVSAFEGYAFDAGMRVGDSLEAVDDVPVKGRSVDQVRDLLRGPPNTQVKVRFTRAGLPGPTQQELLLTRRLVRVPDVKLTSFLGPLRDG-IGYIQLSGFSQNAPAEFRFALELLRLHAPQGLQGLILDLRNNPGGLLTS 161          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.170e-35
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   34 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSN----GQTEQ-EITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELVRS 456
            I VVSAFEGYAFDAGMR GD + ++ G  +EG+TV+  RD LRG P+++V + F R+  N    G  +  E+ L RR+VK+ DVKLATLVG   +  VGY+QLSGFS  A ++L  A   LD  A  GL G+ILD+RGNPG L+ S
Sbjct:  221 IQVVSAFEGYAFDAGMRPGDTLVSVGGTSIEGLTVDSVRDLLRGSPDTEVPVRFTREGVNLDGKGVPQPLEVILKRRMVKVSDVKLATLVGSPADG-VGYVQLSGFSPSAGKDLAAALHALDMTAPKGLSGLILDLRGNPGGLLES 365          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S2R3Y2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Y2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.440e-35
Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 1
Query:    7 ANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 456
            A ++A + GI VV+AFEGYAFD GMR GD++ AI+G+ +   + VE  R++LRGEP +KV I+F+R    G+T   ++++R++V++RDVKL TL+G  +N  VGY+QLSGF+  A +E++ A   L +A E   GG   L+ +ILD+RGNPG L+ S
Sbjct:   28 ALKQAKEKGIRVVTAFEGYAFDYGMRVGDQLVAIDGQRITSTMNVEAVRNKLRGEPGTKVDITFMRVGVPGETT--LSISRKVVQIRDVKLTTLIGKPENG-VGYIQLSGFTANAGREVRGAILALQAATEEASGGQNSLQSLILDLRGNPGGLLTS 181          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1GGW4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGW4_CYCTE)

HSP 1 Score: 129 bits (325), Expect = 1.140e-34
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 1
Query:   25 KDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGIT-VEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAE---GG---LRGVILDMRGNPGELVRS 456
            K GI VVSAFEGYAFD GMR GDR+  ++G  +   T VE  R+ LRGEP + V ++F R+   G   Q +T+ R +VK+ DVKLAT VGD K+  VGY+QLSGF+    +E++ +   L  AAE   GG   L+G+ILDMRGNPG L+ S
Sbjct:   72 KKGIQVVSAFEGYAFDYGMRVGDRLVGVDGTDITPKTSVEDVRNLLRGEPGTSVEVTFEREGVEGP--QTVTIPRTIVKINDVKLATFVGDPKDG-VGYIQLSGFASETGREVRNSILALQRAAEEASGGTRSLQGLILDMRGNPGGLLTS 219          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.170e-34
Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   16 EAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD------SAAEGGLRGVILDMRGNPGELVRS 456
            +A K GI VVSAFEGYA+D GMR GDR+ AI+G+ +   +T E  R++LRGEP + V ++F+RD   G  E  ++L R LVK+RDVKLAT VGD ++  VGY+Q+SGF+    +EL+ A   L       S  E GLRG++LD+RGNPG L+ S
Sbjct:  375 KARKQGIRVVSAFEGYAYDYGMRVGDRLMAIDGQLLTPTMTAEDVRNKLRGEPGTSVEVTFVRDGVEG--ENTVSLPRTLVKMRDVKLATFVGDPRDG-VGYVQVSGFAAETGRELRNAILALQRVAEDTSGGEAGLRGLVLDLRGNPGGLLTS 525          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 135 bits (340), Expect = 7.650e-34
Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:   16 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 456
            + GKD  GI V+ AFEGYAFDAGMR GD +  + G+PV  ++ E+ ++ LRG P+S+V+++F+RD  +G   Q +TLTRRLV++ +VKL   +G  ++  +GY+QLSGFS  +  E++ A R+L  +A   GL GV+LD+RGNPG L+ S
Sbjct:  373 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNS 519          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 133 bits (335), Expect = 3.260e-33
Identity = 71/150 (47.33%), Postives = 106/150 (70.67%), Query Frame = 1
Query:   16 EAGKD--GITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLD-SAAEGGLRGVILDMRGNPGELVRS 456
            + GKD  GI V+ AFEGYAFDAGMR GD +  + G+PV  ++ E+ ++ LRG P+S+V+++F+RD  +G   Q +TLTRRLV++ +VKL   +G  ++  +GY+QLSGFS  +  E++ A R+L  +A   GL GV+L++RGNPG L+ S
Sbjct:  157 QRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVDGL--QSVTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLNLRGNPGGLLNS 303          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC)

HSP 1 Score: 133 bits (335), Expect = 3.490e-33
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEG-ITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDS----AAEG--GLRGVILDMRGNPGELVRS 456
            R A  +A K GI VV+AFEGYAFD G+R GD++ AI+ KP+    TVE  R+ LRG+P + VSI F RD  +    Q +T+ R +V+LRDVKLATLVG  ++  +GY+QLSGF+  A  E++QA  YL      A  G   L+G++LD+RGNPG L+ S
Sbjct:  338 RKALEKARKQGIRVVTAFEGYAFDYGLRVGDKLLAIDDKPLTADTTVEDVRNMLRGQPGTLVSIEFNRDGVDDV--QTVTMPRAVVRLRDVKLATLVGSPRDG-IGYIQLSGFTSNAGAEMRQAITYLQQRTLDATNGDKSLQGLVLDLRGNPGGLLTS 493          
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Match: A0A7S1B4F4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.150e-32
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   34 ITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEG------GLRGVILDMRGNPGELVRS 456
            I VV+AFEGYAFDAGMR GD++ A++G  ++G T E+ R  LRGEP ++VS+ F RD   G +  +I   RRLVK+ D+KL T +G+ K   +GY+QLS FS     E++Q+   L  AAE       GLRG+++D+RGNPG L+ S
Sbjct:  142 IRVVTAFEGYAFDAGMRPGDKLVAVDGTTIKGSTAEQVRLMLRGEPGTEVSVDFERDGVQGISNVQIP--RRLVKIPDIKLTTFLGEKKEG-IGYVQLSAFSGDTGAEMRQSILALQKAAERADPSAQGLRGLVVDLRGNPGGLLTS 285          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19872.6452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE2.620e-8897.33PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
I2CP28_NANGC2.160e-3852.08Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
A0A835Z050_9STRA2.170e-3552.74ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S2R3Y2_9STRA4.440e-3547.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1GGW4_CYCTE1.140e-3450.99Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4IQW6_9STRA1.170e-3450.65Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0G4F0N3_VITBC7.650e-3448.00PDZ domain-containing protein n=3 Tax=Vitrella bra... [more]
A0A0G4EX77_VITBC3.260e-3347.33PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]
B7GBC3_PHATC3.490e-3349.69Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1B4F4_9STRA3.150e-3248.30Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19872contigEcto-sp13_S_contig19872:1884..3107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score285.4
Seed ortholog evalue1.6e-74
Seed eggNOG ortholog2880.D7FJW2
Model size480
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
Cds size480
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.0856225-CDS-Ecto-sp13_S_contig19872:1883..20271681463002.0856225-CDS-Ecto-sp13_S_contig19872:1883..2027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19872 1884..2027 +
1681463002.095684-CDS-Ecto-sp13_S_contig19872:2771..31071681463002.095684-CDS-Ecto-sp13_S_contig19872:2771..3107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19872 2772..3107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19872.6452.1prot_Ecto-sp13_S_contig19872.6452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19872 1884..3107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19872.6452.1

>prot_Ecto-sp13_S_contig19872.6452.1 ID=prot_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
RGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKAR
DQLRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLATLVGDVK
NAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGELV
RSRKYRGRS*
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mRNA from alignment at Ecto-sp13_S_contig19872:1884..3107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19872.6452.1 ID=mRNA_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:1884..3107+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGGTGCTAACCGAGAGGCCGGTAAGGACGGCATCACGGTCGTGTCGGC CTTCGAGGGATACGCCTTCGACGCCGGGATGCGGGCTGGCGATAGGATAA CCGCCATCAACGGGAAGCCCGTGGAAGGCATCACCGTCGAGAAGGTAGCG ACAAGCGTGTGCTCATAAGTAGATCCAAAAACGAAGATGCGCTTCGCGAA TTTCATGCGCGTACTTTTGTTGATTTTTGCACGTGTCTTGTGTCAAGGTT GAAAGGTATCAAAACGTTTTTTTTTTTTTACGTCGCGGTCCAAAGAGTGC CAATCTAGGTGCTATTGAGAAGAAAGGCGTTCTGTGTTGAAGTGTTGCTT TTATTTTCACCGTCGAAAAGGAGATGCCAAACGTGTTCTAGATCCATAAT CGAAACTGCCCTCTGTAAACTTGTTTGTGTCGCGTTGTTTGTGGGGGGTG TCTCGTTGTGAAGAGCACGCCGGGACATCCCAATCGTCCAGGGGAATCAT TTTGTGGTACGAGGACGGGGAAGTACCCGCGTTTTTCTGGGTCAGGAGGA GATTTCTTGGTCCGATGGGGCAAGAAAAAAACAAAATCCCGGGTGTTGTT TCGGCCCCGGCATCTGTAAAGATGCATGACGGGCTCGGTACGGCAAATAA CCTGCTGGCCTATGGGACACGCGGGTACGGGAGGAGGCAAGAATTAGCGA GACAACACTGACAGAGCAGGCCATTCGCCCTACCGAGTCCGTGTTGTACA ATTGTAGGCTCCGGTTGCAAACCTCTGATTGTATGTGCGCCTAGTGACCA ATATTTTTCTGTTCTGCTGCCCATCGGCTGCCGGCCACACACACGCTCCA ATCACCGGGATGCCTCACGGTTGGCTTTCTGGAAACAGGCGCGAGATCAG CTGCGAGGAGAGCCAAACTCGAAGGTGAGCATCTCCTTCTTGAGAGACAC CAGCAATGGTCAGACCGAGCAGGAGATTACGCTCACGAGGCGTCTGGTGA AGCTGCGGGACGTTAAGCTGGCCACCCTTGTGGGAGACGTGAAGAACGCT CCGGTGGGCTACATGCAGCTCTCCGGCTTCAGCATGGGGGCGGCGCAGGA GTTGCAGCAGGCGTACCGGTACCTTGACTCGGCAGCCGAGGGGGGGCTCC GCGGTGTCATCCTGGACATGAGGGGGAACCCAGGTGAGTTGGTCCGCTCA AGAAAATATCGAGGCAGAAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19872:1884..3107+

>mRNA_Ecto-sp13_S_contig19872.6452.1 ID=mRNA_Ecto-sp13_S_contig19872.6452.1|Name=mRNA_Ecto-sp13_S_contig19872.6452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:1884..3107+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGGTGCTAACCGAGAGGCCGGTAAGGACGGCATCACGGTCGTGTCGGC
CTTCGAGGGATACGCCTTCGACGCCGGGATGCGGGCTGGCGATAGGATAA
CCGCCATCAACGGGAAGCCCGTGGAAGGCATCACCGTCGAGAAGGCGCGA
GATCAGCTGCGAGGAGAGCCAAACTCGAAGGTGAGCATCTCCTTCTTGAG
AGACACCAGCAATGGTCAGACCGAGCAGGAGATTACGCTCACGAGGCGTC
TGGTGAAGCTGCGGGACGTTAAGCTGGCCACCCTTGTGGGAGACGTGAAG
AACGCTCCGGTGGGCTACATGCAGCTCTCCGGCTTCAGCATGGGGGCGGC
GCAGGAGTTGCAGCAGGCGTACCGGTACCTTGACTCGGCAGCCGAGGGGG
GGCTCCGCGGTGTCATCCTGGACATGAGGGGGAACCCAGGTGAGTTGGTC
CGCTCAAGAAAATATCGAGGCAGAAGCTGA
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