mRNA_Ecto-sp13_S_contig1985.6439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: D7FY69_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY69_ECTSI) HSP 1 Score: 364 bits (934), Expect = 9.160e-124 Identity = 177/191 (92.67%), Postives = 180/191 (94.24%), Query Frame = 1
Query: 166 SRMRPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
SR+RPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGR NGIP+VSFAVSPTASLDDLCTTHD+ YVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCA GELRDR PG R PSLFSGHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQ G
Sbjct: 3 SRLRPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRVNGIPAVSFAVSPTASLDDLCTTHDKGYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCADGELRDRRPGARRTPPSLFSGHIAGGTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQGNG 193
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: A0A7S4B912_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B912_CHRCT) HSP 1 Score: 223 bits (568), Expect = 3.850e-68 Identity = 121/211 (57.35%), Postives = 141/211 (66.82%), Query Frame = 1
Query: 112 YRASPVGLTTAAALVSTQSRMRPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPS--VSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
+ A+ G+ + + P +PLFYND+Y V LP GHRFPM KYRLVR GLQ EL PS +F SP A++ DL T HD YVERY G FT +ENR VGFPWS SVKRSLSS GGTVAA HAVC +R PG F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+++++LIVD DVHQ G
Sbjct: 12 FNAARAGIRSCNLRSYSMMAQYPPVPLFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHAVC------NRTPGA-----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNG 205
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: A0A7S4B9B1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9B1_CHRCT) HSP 1 Score: 223 bits (568), Expect = 4.570e-68 Identity = 121/211 (57.35%), Postives = 141/211 (66.82%), Query Frame = 1
Query: 112 YRASPVGLTTAAALVSTQSRMRPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPS--VSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
+ A+ G+ + + P +PLFYND+Y V LP GHRFPM KYRLVR GLQ EL PS +F SP A++ DL T HD YVERY G FT +ENR VGFPWS SVKRSLSS GGTVAA HAVC +R PG F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+++++LIVD DVHQ G
Sbjct: 12 FNAARAGIRSCNLRSYSMMAQYPPVPLFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHAVC------NRTPGA-----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNG 205
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: A0A7S1IVC4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IVC4_9EUGL) HSP 1 Score: 212 bits (540), Expect = 3.740e-64 Identity = 111/182 (60.99%), Postives = 123/182 (67.58%), Query Frame = 1
Query: 193 FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
+YNDVY+V LP GHRFPMEKYR+VRE LQ L E F VSP A+ DLC HD YV RY G FT+ ENR VGFPWS SV RSLSSVGGTVAA H VC G + F+ H+AGGTHHAF D GEGFC+FSDIAVAA VALRDYP+ I++ILIVD DVHQ G
Sbjct: 25 YYNDVYKVPLPQGHRFPMEKYRMVRERLQCLLPQGE-----ALFEVSPLATTRDLCLVHDHTYVNRYRTGAFTDAENRKVGFPWSINSVNRSLSSVGGTVAATHMVCTG--------------KAFFAAHLAGGTHHAFRDHGEGFCIFSDIAVAATVALRDYPKIIKKILIVDLDVHQGNG 187
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: R1CTH7_EMIHU (Hist_deacetyl domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CTH7_EMIHU) HSP 1 Score: 208 bits (530), Expect = 3.910e-64 Identity = 113/206 (54.85%), Postives = 136/206 (66.02%), Query Frame = 1
Query: 115 RASPVGLTTAAALVSTQSRMRPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQV 732
R +P+ L A+ V T ++P LPL+YND Y+V LP FPMEKYR +RE LQ EL +F SP AS++DL T HD +YV RY +++ENR +GFPWSEA R+LSS GGTVAAMHAVC G R F+GHIAGGTHHAF DRGEG+CVF+DIAVAA ALRDYP IR++L+VD DVHQV
Sbjct: 2 RNAPLRLQLASRAVCTL--VQPPLPLWYNDHYQVSLPSTSSFPMEKYRYIREALQREL----EAAGKATFHESPLASVEDLTTVHDGEYVRRYLANELSHKENRRIGFPWSEAGKLRALSSTGGTVAAMHAVCRPGGAR-------------FAGHIAGGTHHAFADRGEGYCVFNDIAVAAACALRDYP-AIRRVLLVDLDVHQV 187
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: A0A835Z933_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z933_9STRA) HSP 1 Score: 207 bits (528), Expect = 2.890e-62 Identity = 111/198 (56.06%), Postives = 125/198 (63.13%), Query Frame = 1
Query: 202 DVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPS-------------------VSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
DVY V LP HRFPM KYR+VRE +Q EL G +F+VSP AS DDL TTH DYV R G T +E+R VGFPWSE V R+LSS+GGTVAA HAVC RD G LF+GH+AGGTHHAF DRGEGFCVFSDIAVAANVALRD+ E +R+ILI+D DVHQ G
Sbjct: 1 DVYEVPLPTTHRFPMPKYRMVREMIQAELAGSSXXXXXXXXXXXXXXXXXXXSAPMLATFSVSPLASYDDLITTHCPDYVTRVLTGNLTPKESRNVGFPWSEGHVNRTLSSIGGTVAAAHAVCTSPAARDA-----GAPFCLFAGHVAGGTHHAFYDRGEGFCVFSDIAVAANVALRDHAELVRKILIIDLDVHQGNG 193
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: F0YDD4_AURAN (Uncharacterized protein HDA n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDD4_AURAN) HSP 1 Score: 201 bits (512), Expect = 5.830e-60 Identity = 113/205 (55.12%), Postives = 131/205 (63.90%), Query Frame = 1
Query: 139 TAAALVSTQSRMRPELPLFY-NDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVC----AGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
T A L ++R P+FY NDV+ LP+ HRFPM KYRLVRE LQ E G+ + +F SP ASL DL TTH R Y ER+ G+ T ENR +GFPWS A V R+LSS GGTVAA AV AGG LR +GH+AGGTHHAF DRGEGFCVFSDIAVAANV LRDY + + +IL+VD DVHQ G
Sbjct: 5 TCALLAVRRARGLATRPVFYYNDVWEFPLPENHRFPMAKYRLVREALQAE------GV-AAAFEPSPLASLTDLTTTHCRGYCERFVGGKLTAAENRNIGFPWSPAGVNRALSSTGGTVAAARAVADARRAGGGLR-------------VAGHVAGGTHHAFFDRGEGFCVFSDIAVAANVLLRDYGDVVEKILVVDVDVHQGNG 189
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: L1JLJ8_GUITC (Histone deacetylase HstD n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLJ8_GUITC) HSP 1 Score: 201 bits (511), Expect = 3.290e-59 Identity = 105/186 (56.45%), Postives = 123/186 (66.13%), Query Frame = 1
Query: 181 ELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
+L LFYND+Y V+LP GHRFPM KYR VRE + P++ SP A DD+ TTH +Y+ R+ T++ENR +GFPWS VKR+LSSVGGTVAAMH+ T +GHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDY E I++ILIVDCDVHQ G
Sbjct: 101 QLRLFYNDIYHVELPQGHRFPMHKYRAVRERIH------HANKPNIVLQPSPIARTDDIRTTHCHEYLRRFLCNMLTDKENRNIGFPWSPQGVKRTLSSVGGTVAAMHS----------------STGHKLAGHIAGGTHHAFRDRGEGFCVFSDIAVAANVALRDY-EHIKKILIVDCDVHQGNG 263
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: A0A7S1D7Q2_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7Q2_CYCTE) HSP 1 Score: 195 bits (496), Expect = 1.080e-57 Identity = 104/193 (53.89%), Postives = 126/193 (65.28%), Query Frame = 1
Query: 175 RPELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGREN-----GIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
RP P++YNDVY V LP HRFPM+KYR RE +Q ++ G+ S VSP A+ D++ TTH DY+ R+ G T+ E R VGFPWSEA VKR+LSS GGTVAA AVC +T ++S H+AGGTHHAF DRGEGFCVFSDIAVAANV L+ YP +++ILIVD DVHQ G
Sbjct: 5 RPYFPIYYNDVYEVILPPHHRFPMDKYRQTRELIQQYMMDAMTTATTAGVVS-DLRVSPLATWDEIITTHSPDYLYRFVTGDQTDEELRNVGFPWSEAGVKRALSSTGGTVAAACAVCDA-----LLQSGDDRTHPVWSAHVAGGTHHAFFDRGEGFCVFSDIAVAANVVLQRYPSLVKKILIVDLDVHQGNG 191
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Match: B7FP07_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP07_PHATC) HSP 1 Score: 192 bits (487), Expect = 9.330e-57 Identity = 102/187 (54.55%), Postives = 126/187 (67.38%), Query Frame = 1
Query: 187 PLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGR---ENGIPSVSFAVSPTASLDDLCTTHDRDYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCAGGELRDRFPGVRGKTPSLFSGHIAGGTHHAFLDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQVRG 738
P++YNDVY V LP HRFPMEKY VR+ +Q L E G+ + F VSP +S+D+L TTHD YV+R+ G RE R VGFPWS+++V RSLSS GGTVAA AV LRD + G+ + H+AGGTHHAF DRGEGFCVFSD+AVAANV ++ YP +R+IL +D DVHQ G
Sbjct: 1 PIYYNDVYEVKLPKNHRFPMEKYGRVRQLVQQWLQNLPVDEQGVVNYEFRVSPLSSIDELTTTHDPAYVQRFLTGDQDERELRNVGFPWSQSNVDRSLSSTGGTVAAACAVVQA-RLRDPY-GLH------WGAHVAGGTHHAFYDRGEGFCVFSDMAVAANVVMKRYPGVVRRILFLDLDVHQGNG 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1985.6439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1985.6439.1 >prot_Ecto-sp13_S_contig1985.6439.1 ID=prot_Ecto-sp13_S_contig1985.6439.1|Name=mRNA_Ecto-sp13_S_contig1985.6439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp MRPSSPAILNMISTLLPCARQQAAARSIAVPNGRLVAYRASPVGLTTAAAback to top mRNA from alignment at Ecto-sp13_S_contig1985:202..3807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1985.6439.1 ID=mRNA_Ecto-sp13_S_contig1985.6439.1|Name=mRNA_Ecto-sp13_S_contig1985.6439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1985:202..3807- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1985:202..3807- >mRNA_Ecto-sp13_S_contig1985.6439.1 ID=mRNA_Ecto-sp13_S_contig1985.6439.1|Name=mRNA_Ecto-sp13_S_contig1985.6439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1985:202..3807- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |