mRNA_Ecto-sp13_S_contig1983.6427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A6H5L3R1_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R1_9PHAE) HSP 1 Score: 678 bits (1749), Expect = 1.170e-224 Identity = 378/488 (77.46%), Postives = 394/488 (80.74%), Query Frame = 2
Query: 29 SGCNNSSSCEYTEKETAPVKADPSTRSSNGESGDVFALHKNSGGGSSPATGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARAFRCKGVAELSQVPNLFDDESIAGVVLAATAVSEVTTATVDGAENDGRVGVPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL-----------------------LVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVATATTTTNAIKTKK 1423
SG N SSSC++TEKETAPVKADPSTRSSNGESGDVF HKNSG XXXXXXXXXXXX AVAR RC+GVAELSQVPNLFDDESI+GVVLAATA SEVT VDG ENDGRVGVPE+SITGRRLNREIGVKSRFVGYGDGAACTVE+LVLQHLSQR EGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL LVGDAWLANAGTVCRGL+WD+SSVRHLQAIAAGLGGPAMA++ AALCLNHKHFGGGLPDLLLMRAVRTDTNA+VVAA EGRDGKIA+GKAAA+A PPAFE SEVSTPAAFV+WLGIDSEVAFDVDGG+ERP KR + FKAADMAGLRLETWLLEVKGPSDRLSDRQ AWLRILDRGRALVGVCHVTE AGGSHVATATTTTNAIKTKK
Sbjct: 1021 SGGNVSSSCKHTEKETAPVKADPSTRSSNGESGDVFEQHKNSGX-XXXXXXXXXXXXXXXXXXXXXKKADPEAAPETTTDPAAEAAVARTLRCEGVAELSQVPNLFDDESISGVVLAATAASEVTNIIVDGTENDGRVGVPEISITGRRLNREIGVKSRFVGYGDGAACTVESLVLQHLSQREEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYLNRRTAVDARLAELRAASAAELVALVGDAWLANAGTVCRGLNWDKSSVRHLQAIAAGLGGPAMASISAALCLNHKHFGGGLPDLLLMRAVRTDTNAAVVAATGEGRDGKIAEGKAAAEAEPPAFEVVSEVSTPAAFVSWLGIDSEVAFDVDGGNERPPPPPTDRGSGKRDKGVPKRPSPPPFKAADMAGLRLETWLLEVKGPSDRLSDRQMAWLRILDRGRALVGVCHVTEGAGGSHVATATTTTNAIKTKK 1507
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: D7FNK3_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK3_ECTSI) HSP 1 Score: 554 bits (1428), Expect = 1.180e-191 Identity = 299/351 (85.19%), Postives = 306/351 (87.18%), Query Frame = 2
Query: 455 MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL-----------------------LVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVST-----PAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVATATTTTNAIKTKK 1423
MSITGRRLNREIG KSRFVGYGDGAACTVE LVLQHLSQR EGSWAGWHCEGSPLR+LWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL LVGDAWLANAGTVCRGL+WDRSSVRHLQAIAAGLGGPAMAA+LAALCLNHKHFGGGLPDLLLMRAVRTDTNA+ VAAA EGRDGKIAKGKAAA+A PPAFEAESEVST PAAFV+WLGIDSEVAFDVDGGDERPXXXXX KRG+ XXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTE AGGSHVATATTTTNAIKTKK
Sbjct: 1 MSITGRRLNREIGAKSRFVGYGDGAACTVEALVLQHLSQREEGSWAGWHCEGSPLRSLWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYLNRRTAVDTRLAELRAASAAELVALVGDAWLANAGTVCRGLNWDRSSVRHLQAIAAGLGGPAMAAILAALCLNHKHFGGGLPDLLLMRAVRTDTNAAAVAAAGEGRDGKIAKGKAAAEAAPPAFEAESEVSTVRFSGPAAFVSWLGIDSEVAFDVDGGDERPXXXXXDGGNGKRGKGVPMRXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEGAGGSHVATATTTTNAIKTKK 351
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: L1J0F1_GUITC (Fanconi-associated nuclease (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0F1_GUITC) HSP 1 Score: 150 bits (380), Expect = 1.100e-38 Identity = 75/159 (47.17%), Postives = 94/159 (59.12%), Query Frame = 2
Query: 533 CTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY-----------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVR 940
C VE L +QH Q G W G HCEGSPLR L++LL WDVIFS V D F TPFQDAP+DLDF P FY L + + W + GT+CRG SW S+ LQ +A LGG ++A+ ALC+N++HF GG+PDL+L+R R
Sbjct: 1 CGVEELAMQHYEQEERGRWKGIHCEGSPLRFLFSLLFWDVIFSSDVPDAFLTPFQDAPIDLDFHPFFYKRREALILARIADLELWSDQQLLLELRERWQQSFGTLCRGASWGSCSLSFLQLVALCLGGRRISAICRALCINYRHFSGGMPDLVLLRGRR 159
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A388LRU2_CHABU (Fanconi-associated nuclease (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LRU2_CHABU) HSP 1 Score: 151 bits (382), Expect = 1.170e-37 Identity = 115/329 (34.95%), Postives = 154/329 (46.81%), Query Frame = 2
Query: 455 MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLD---FCP---------LFYLLVGDA-------WLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVA 1384
+SI GR +NR +G+KSRF GY DG +CTVE L LQH ++ G W G H E L+ +LMWDV+F+ V DVF+TPFQ APLDLD F P L + G+A W GT+CRG++W+R S+ LQ IAA +GG +AAV L +H + GG+PDLLL R + K+A K E + P + +GG+ +G + D+ LR E L+EVKGP DRLS++Q AW+ L V VC V E + V+
Sbjct: 1 ISILGRPVNRTVGMKSRFYGY-DGCSCTVEELALQHYAKEEYGQWVGVHSENGIWNTLFGILMWDVLFAD-VPDVFRTPFQTAPLDLDTDAFYPARRDLIEVHLLAIQEGNAQDMIAHCWAEREGTLCRGVNWERHSLSELQVIAACIGGDGLAAVCRLLAEDHVAWSGGMPDLLLWR------------------ERKLAPEK-------------GEGTLPG--------------NANGGNAHGSHAPDYDAKFGKGNGEEGVSPTQRNRERDIT-LR-EAKLVEVKGPRDRLSEQQMAWIDALVSAGLDVEVCKVVESIEDADVS 280
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2K1KI61_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI61_PHYPA) HSP 1 Score: 149 bits (375), Expect = 1.760e-33 Identity = 108/324 (33.33%), Postives = 147/324 (45.37%), Query Frame = 2
Query: 446 VPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLF-------------------YLLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTE 1360
V E+ I GR LN IG+KSRF G+ DG C VE L LQH + G W G H EG L+ LLMWD+IF+ V DVFQTPFQ APLDL+ F +L+ + W GT CRG++W R S+ +LQ IAA +GG ++A++ LC +H + G+PDLLL R + + + + R ++ + E E+ V++ +RP LR E L+EVKGP DRLS++Q AW+ +L V VC V E
Sbjct: 873 VEEVQIRGRPLNCTIGMKSRFYGF-DGQQCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFAD-VPDVFQTPFQTAPLDLNTRSFFTSRQSIIEKRLEEIRQGCAVVLLAECWSKYHGTCCRGINWHRYSLENLQIIAACVGGSGLSALIRLLCQDHAGYSAGMPDLLLWRTYKEPSQLRRAGSVMDCRSCDCSQ-------ETDSLELENIVNSEET-------------------KRPEKTKGHV-------------------------LRGEAKLVEVKGPRDRLSEQQRAWIVVLLNAGLSVQVCKVFE 1143
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: E1ZM93_CHLVA (Fanconi-associated nuclease n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZM93_CHLVA) HSP 1 Score: 148 bits (374), Expect = 2.040e-33 Identity = 85/192 (44.27%), Postives = 105/192 (54.69%), Query Frame = 2
Query: 449 PEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVV 964
P + I GR LNR G KSRF G D C VE L LQH + G W G HCEG L+ LL+WDV+F P V DVF+TPFQ APLDLD PLFY ++ AW + GT+CRG+ WDR + LQ +A +GG +AAV L ++H + GG+PDLLL R R D + V
Sbjct: 766 PVVRIQGRPLNRTTGAKSRFYGL-DEEQCGVEELALQHYATEEGGGWQGVHCEGGVWAMLFGLLLWDVLFMP-VPDVFRTPFQTAPLDLD-TPLFYPTRKEAVKACLARVAAGEAPRMLAAAWEQHEGTMCRGVRWDRHELEELQVVAECVGGRQLAAVCRLLAIDHGGWSGGMPDLLLWRPARRDAKLAEV 954
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2P6TYW3_CHLSO (Fanconi-associated nuclease n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYW3_CHLSO) HSP 1 Score: 147 bits (371), Expect = 6.990e-33 Identity = 83/184 (45.11%), Postives = 103/184 (55.98%), Query Frame = 2
Query: 449 PEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVR 940
PE+ I G LN G KSRF G+ D A CTVE L LQ+ + G W G H EG LW LL+WDV+F P V DVF+TPFQ APLDLD PLFY ++ AW + G +CRG++W+R S+ LQ IA +GGP +A V L +H + GG+PDLLL A R
Sbjct: 1438 PEVRIVGWPLNNTTGTKSRFYGFDD-AQCTVEELALQYYATEDGGGWQGVHSEGGIWATLWGLLLWDVLFMP-VPDVFRTPFQTAPLDLD-TPLFYPTRKDAIEECLGRISAGQAPAMLRSAWQQHRGVMCRGVNWERHSLEDLQLIAECIGGPGLAQVCRLLAQDHGGWSGGMPDLLLWHAGR 1618
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A9SF58_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SF58_PHYPA) HSP 1 Score: 145 bits (365), Expect = 1.790e-32 Identity = 80/186 (43.01%), Postives = 105/186 (56.45%), Query Frame = 2
Query: 446 VPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLF-------------------YLLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTD 946
V E+ I GR LN IG+KSRF G+ DG C VE L LQH + G W G H EG L+ LLMWD+IF+ V DVFQTPFQ APLDL+ F +L+ + W GT CRG++W R S+ +LQ IAA +GG ++A++ LC +H + G+PDLLL R + +
Sbjct: 549 VEEVQIRGRPLNCTIGMKSRFYGF-DGQQCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFAD-VPDVFQTPFQTAPLDLNTRSFFTSRQSIIEKRLEEIRQGCAVVLLAECWSKYHGTCCRGINWHRYSLENLQIIAACVGGSGLSALIRLLCQDHAGYSAGMPDLLLWRTYKPE 732
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2R6XQH5_MARPO (Fanconi-associated nuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQH5_MARPO) HSP 1 Score: 142 bits (359), Expect = 1.810e-31 Identity = 116/324 (35.80%), Postives = 149/324 (45.99%), Query Frame = 2
Query: 452 EMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTED 1363
E+ I GR LN G KSRF GY DG C VE L LQ+ + G+W G HCEG L+ LLMWDV+F+ V DVFQ PFQ APLDL+ LFY +V +W N GT+C G++W+R S+ L IA +GG ++ V L +H + GG+PDLLL R T N S +K +V ++VS + IDS D+ G+E R LR E L+EVKGP DRLS++Q AW+ IL G V VC V E+
Sbjct: 967 EVQIRGRPLNCVTGKKSRFYGY-DGEQCGVEELALQYYASEEGGAWQGVHCEGGVWLTLFGLLMWDVLFAE-VPDVFQNPFQTAPLDLN-TDLFYPSRQDLIETRLAAIAVGNTESIVTQSWNKNFGTMCDGVNWERHSLAELLTIATCIGGSGLSHVCRLLAEDHAGWRGGMPDLLLWR---TSANTS----------SDCSKCSMCGCSV-------TDVS-----LKIKPIDSMNCEDLCLGEEGCKNVTKDLVLSTRN-----------------TALRGEAKLVEVKGPRDRLSEQQMAWIWILMNGGLSVEVCKVLEE 1245
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2P6VNM0_9CHLO (Fanconi-associated nuclease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNM0_9CHLO) HSP 1 Score: 140 bits (354), Expect = 5.350e-31 Identity = 85/191 (44.50%), Postives = 106/191 (55.50%), Query Frame = 2
Query: 452 EMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY-------------LLVGDA-------WLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVV 964
E+ I GR LN +GVKSRF G D CTVE L LQ+ + G W G H EG L+ LL+WDV+F P DVF+TPFQ APLDLD P FY + GDA W A+ GT+ RG++W+R S+ LQ +A +GG A+A V L +H + GG+PDLLL R R D S V
Sbjct: 656 EVRIEGRPLNNTLGVKSRFYGPND-EQCTVEELALQYYAGEEGGGWRGVHSEGGIWATLFGLLLWDVLFMPA-PDVFRTPFQTAPLDLD-TPGFYEARKGAVEACLAHVAAGDAPRLLRASWEAHEGTLARGVNWERHSLEELQLVAECIGGAALAGVCRLLARDHAGWSGGMPDLLLWRPDRRDAKLSEV 843 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1983.6427.1 >prot_Ecto-sp13_S_contig1983.6427.1 ID=prot_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCback to top mRNA from alignment at Ecto-sp13_S_contig1983:9685..13735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1983.6427.1 ID=mRNA_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:9685..13735- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1983:9685..13735- >mRNA_Ecto-sp13_S_contig1983.6427.1 ID=mRNA_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:9685..13735- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |