mRNA_Ecto-sp13_S_contig1983.6427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1983.6427.1
Unique NamemRNA_Ecto-sp13_S_contig1983.6427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A6H5L3R1_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R1_9PHAE)

HSP 1 Score: 678 bits (1749), Expect = 1.170e-224
Identity = 378/488 (77.46%), Postives = 394/488 (80.74%), Query Frame = 2
Query:   29 SGCNNSSSCEYTEKETAPVKADPSTRSSNGESGDVFALHKNSGGGSSPATGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARAFRCKGVAELSQVPNLFDDESIAGVVLAATAVSEVTTATVDGAENDGRVGVPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL-----------------------LVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVATATTTTNAIKTKK 1423
            SG N SSSC++TEKETAPVKADPSTRSSNGESGDVF  HKNSG           XXXXXXXXXXXX                   AVAR  RC+GVAELSQVPNLFDDESI+GVVLAATA SEVT   VDG ENDGRVGVPE+SITGRRLNREIGVKSRFVGYGDGAACTVE+LVLQHLSQR EGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL                       LVGDAWLANAGTVCRGL+WD+SSVRHLQAIAAGLGGPAMA++ AALCLNHKHFGGGLPDLLLMRAVRTDTNA+VVAA  EGRDGKIA+GKAAA+A PPAFE  SEVSTPAAFV+WLGIDSEVAFDVDGG+ERP          KR +          FKAADMAGLRLETWLLEVKGPSDRLSDRQ AWLRILDRGRALVGVCHVTE AGGSHVATATTTTNAIKTKK
Sbjct: 1021 SGGNVSSSCKHTEKETAPVKADPSTRSSNGESGDVFEQHKNSGX-XXXXXXXXXXXXXXXXXXXXXKKADPEAAPETTTDPAAEAAVARTLRCEGVAELSQVPNLFDDESISGVVLAATAASEVTNIIVDGTENDGRVGVPEISITGRRLNREIGVKSRFVGYGDGAACTVESLVLQHLSQREEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYLNRRTAVDARLAELRAASAAELVALVGDAWLANAGTVCRGLNWDKSSVRHLQAIAAGLGGPAMASISAALCLNHKHFGGGLPDLLLMRAVRTDTNAAVVAATGEGRDGKIAEGKAAAEAEPPAFEVVSEVSTPAAFVSWLGIDSEVAFDVDGGNERPPPPPTDRGSGKRDKGVPKRPSPPPFKAADMAGLRLETWLLEVKGPSDRLSDRQMAWLRILDRGRALVGVCHVTEGAGGSHVATATTTTNAIKTKK 1507          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: D7FNK3_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK3_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 1.180e-191
Identity = 299/351 (85.19%), Postives = 306/351 (87.18%), Query Frame = 2
Query:  455 MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL-----------------------LVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVST-----PAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVATATTTTNAIKTKK 1423
            MSITGRRLNREIG KSRFVGYGDGAACTVE LVLQHLSQR EGSWAGWHCEGSPLR+LWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYL                       LVGDAWLANAGTVCRGL+WDRSSVRHLQAIAAGLGGPAMAA+LAALCLNHKHFGGGLPDLLLMRAVRTDTNA+ VAAA EGRDGKIAKGKAAA+A PPAFEAESEVST     PAAFV+WLGIDSEVAFDVDGGDERPXXXXX     KRG+     XXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTE AGGSHVATATTTTNAIKTKK
Sbjct:    1 MSITGRRLNREIGAKSRFVGYGDGAACTVEALVLQHLSQREEGSWAGWHCEGSPLRSLWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYLNRRTAVDTRLAELRAASAAELVALVGDAWLANAGTVCRGLNWDRSSVRHLQAIAAGLGGPAMAAILAALCLNHKHFGGGLPDLLLMRAVRTDTNAAAVAAAGEGRDGKIAKGKAAAEAAPPAFEAESEVSTVRFSGPAAFVSWLGIDSEVAFDVDGGDERPXXXXXDGGNGKRGKGVPMRXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEGAGGSHVATATTTTNAIKTKK 351          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: L1J0F1_GUITC (Fanconi-associated nuclease (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0F1_GUITC)

HSP 1 Score: 150 bits (380), Expect = 1.100e-38
Identity = 75/159 (47.17%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  533 CTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY-----------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVR 940
            C VE L +QH  Q   G W G HCEGSPLR L++LL WDVIFS  V D F TPFQDAP+DLDF P FY                       L + + W  + GT+CRG SW   S+  LQ +A  LGG  ++A+  ALC+N++HF GG+PDL+L+R  R
Sbjct:    1 CGVEELAMQHYEQEERGRWKGIHCEGSPLRFLFSLLFWDVIFSSDVPDAFLTPFQDAPIDLDFHPFFYKRREALILARIADLELWSDQQLLLELRERWQQSFGTLCRGASWGSCSLSFLQLVALCLGGRRISAICRALCINYRHFSGGMPDLVLLRGRR 159          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A388LRU2_CHABU (Fanconi-associated nuclease (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LRU2_CHABU)

HSP 1 Score: 151 bits (382), Expect = 1.170e-37
Identity = 115/329 (34.95%), Postives = 154/329 (46.81%), Query Frame = 2
Query:  455 MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLD---FCP---------LFYLLVGDA-------WLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEDAGGSHVA 1384
            +SI GR +NR +G+KSRF GY DG +CTVE L LQH ++   G W G H E      L+ +LMWDV+F+  V DVF+TPFQ APLDLD   F P         L  +  G+A       W    GT+CRG++W+R S+  LQ IAA +GG  +AAV   L  +H  + GG+PDLLL R                  + K+A  K              E + P               + +GG+              +G            +  D+  LR E  L+EVKGP DRLS++Q AW+  L      V VC V E    + V+
Sbjct:    1 ISILGRPVNRTVGMKSRFYGY-DGCSCTVEELALQHYAKEEYGQWVGVHSENGIWNTLFGILMWDVLFAD-VPDVFRTPFQTAPLDLDTDAFYPARRDLIEVHLLAIQEGNAQDMIAHCWAEREGTLCRGVNWERHSLSELQVIAACIGGDGLAAVCRLLAEDHVAWSGGMPDLLLWR------------------ERKLAPEK-------------GEGTLPG--------------NANGGNAHGSHAPDYDAKFGKGNGEEGVSPTQRNRERDIT-LR-EAKLVEVKGPRDRLSEQQMAWIDALVSAGLDVEVCKVVESIEDADVS 280          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2K1KI61_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI61_PHYPA)

HSP 1 Score: 149 bits (375), Expect = 1.760e-33
Identity = 108/324 (33.33%), Postives = 147/324 (45.37%), Query Frame = 2
Query:  446 VPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLF-------------------YLLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTE 1360
            V E+ I GR LN  IG+KSRF G+ DG  C VE L LQH +    G W G H EG     L+ LLMWD+IF+  V DVFQTPFQ APLDL+    F                    +L+ + W    GT CRG++W R S+ +LQ IAA +GG  ++A++  LC +H  +  G+PDLLL R  +  +      +  + R    ++          + E E+ V++                      +RP                                LR E  L+EVKGP DRLS++Q AW+ +L      V VC V E
Sbjct:  873 VEEVQIRGRPLNCTIGMKSRFYGF-DGQQCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFAD-VPDVFQTPFQTAPLDLNTRSFFTSRQSIIEKRLEEIRQGCAVVLLAECWSKYHGTCCRGINWHRYSLENLQIIAACVGGSGLSALIRLLCQDHAGYSAGMPDLLLWRTYKEPSQLRRAGSVMDCRSCDCSQ-------ETDSLELENIVNSEET-------------------KRPEKTKGHV-------------------------LRGEAKLVEVKGPRDRLSEQQRAWIVVLLNAGLSVQVCKVFE 1143          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: E1ZM93_CHLVA (Fanconi-associated nuclease n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZM93_CHLVA)

HSP 1 Score: 148 bits (374), Expect = 2.040e-33
Identity = 85/192 (44.27%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  449 PEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVV 964
            P + I GR LNR  G KSRF G  D   C VE L LQH +    G W G HCEG     L+ LL+WDV+F P V DVF+TPFQ APLDLD  PLFY                     ++  AW  + GT+CRG+ WDR  +  LQ +A  +GG  +AAV   L ++H  + GG+PDLLL R  R D   + V
Sbjct:  766 PVVRIQGRPLNRTTGAKSRFYGL-DEEQCGVEELALQHYATEEGGGWQGVHCEGGVWAMLFGLLLWDVLFMP-VPDVFRTPFQTAPLDLD-TPLFYPTRKEAVKACLARVAAGEAPRMLAAAWEQHEGTMCRGVRWDRHELEELQVVAECVGGRQLAAVCRLLAIDHGGWSGGMPDLLLWRPARRDAKLAEV 954          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2P6TYW3_CHLSO (Fanconi-associated nuclease n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYW3_CHLSO)

HSP 1 Score: 147 bits (371), Expect = 6.990e-33
Identity = 83/184 (45.11%), Postives = 103/184 (55.98%), Query Frame = 2
Query:  449 PEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVR 940
            PE+ I G  LN   G KSRF G+ D A CTVE L LQ+ +    G W G H EG     LW LL+WDV+F P V DVF+TPFQ APLDLD  PLFY                     ++  AW  + G +CRG++W+R S+  LQ IA  +GGP +A V   L  +H  + GG+PDLLL  A R
Sbjct: 1438 PEVRIVGWPLNNTTGTKSRFYGFDD-AQCTVEELALQYYATEDGGGWQGVHSEGGIWATLWGLLLWDVLFMP-VPDVFRTPFQTAPLDLD-TPLFYPTRKDAIEECLGRISAGQAPAMLRSAWQQHRGVMCRGVNWERHSLEDLQLIAECIGGPGLAQVCRLLAQDHGGWSGGMPDLLLWHAGR 1618          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A9SF58_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SF58_PHYPA)

HSP 1 Score: 145 bits (365), Expect = 1.790e-32
Identity = 80/186 (43.01%), Postives = 105/186 (56.45%), Query Frame = 2
Query:  446 VPEMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLF-------------------YLLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTD 946
            V E+ I GR LN  IG+KSRF G+ DG  C VE L LQH +    G W G H EG     L+ LLMWD+IF+  V DVFQTPFQ APLDL+    F                    +L+ + W    GT CRG++W R S+ +LQ IAA +GG  ++A++  LC +H  +  G+PDLLL R  + +
Sbjct:  549 VEEVQIRGRPLNCTIGMKSRFYGF-DGQQCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFAD-VPDVFQTPFQTAPLDLNTRSFFTSRQSIIEKRLEEIRQGCAVVLLAECWSKYHGTCCRGINWHRYSLENLQIIAACVGGSGLSALIRLLCQDHAGYSAGMPDLLLWRTYKPE 732          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2R6XQH5_MARPO (Fanconi-associated nuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQH5_MARPO)

HSP 1 Score: 142 bits (359), Expect = 1.810e-31
Identity = 116/324 (35.80%), Postives = 149/324 (45.99%), Query Frame = 2
Query:  452 EMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY--------------------LLVGDAWLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESEVSTPAAFVAWLGIDSEVAFDVDGGDERPXXXXXXXXXXKRGQXXXXXXXXXXFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTED 1363
            E+ I GR LN   G KSRF GY DG  C VE L LQ+ +    G+W G HCEG     L+ LLMWDV+F+  V DVFQ PFQ APLDL+   LFY                     +V  +W  N GT+C G++W+R S+  L  IA  +GG  ++ V   L  +H  + GG+PDLLL R   T  N S             +K      +V       ++VS     +    IDS    D+  G+E             R                    LR E  L+EVKGP DRLS++Q AW+ IL  G   V VC V E+
Sbjct:  967 EVQIRGRPLNCVTGKKSRFYGY-DGEQCGVEELALQYYASEEGGAWQGVHCEGGVWLTLFGLLMWDVLFAE-VPDVFQNPFQTAPLDLN-TDLFYPSRQDLIETRLAAIAVGNTESIVTQSWNKNFGTMCDGVNWERHSLAELLTIATCIGGSGLSHVCRLLAEDHAGWRGGMPDLLLWR---TSANTS----------SDCSKCSMCGCSV-------TDVS-----LKIKPIDSMNCEDLCLGEEGCKNVTKDLVLSTRN-----------------TALRGEAKLVEVKGPRDRLSEQQMAWIWILMNGGLSVEVCKVLEE 1245          
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Match: A0A2P6VNM0_9CHLO (Fanconi-associated nuclease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNM0_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 5.350e-31
Identity = 85/191 (44.50%), Postives = 106/191 (55.50%), Query Frame = 2
Query:  452 EMSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFY-------------LLVGDA-------WLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGGGLPDLLLMRAVRTDTNASVV 964
            E+ I GR LN  +GVKSRF G  D   CTVE L LQ+ +    G W G H EG     L+ LL+WDV+F P   DVF+TPFQ APLDLD  P FY             +  GDA       W A+ GT+ RG++W+R S+  LQ +A  +GG A+A V   L  +H  + GG+PDLLL R  R D   S V
Sbjct:  656 EVRIEGRPLNNTLGVKSRFYGPND-EQCTVEELALQYYAGEEGGGWRGVHSEGGIWATLFGLLLWDVLFMPA-PDVFRTPFQTAPLDLD-TPGFYEARKGAVEACLAHVAAGDAPRLLRASWEAHEGTLARGVNWERHSLEELQLVAECIGGAALAGVCRLLARDHAGWSGGMPDLLLWRPDRRDAKLSEV 843          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1983.6427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3R1_9PHAE1.170e-22477.46Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
D7FNK3_ECTSI1.180e-19185.19Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
L1J0F1_GUITC1.100e-3847.17Fanconi-associated nuclease (Fragment) n=1 Tax=Gui... [more]
A0A388LRU2_CHABU1.170e-3734.95Fanconi-associated nuclease (Fragment) n=1 Tax=Cha... [more]
A0A2K1KI61_PHYPA1.760e-3333.33Fanconi-associated nuclease n=1 Tax=Physcomitrium ... [more]
E1ZM93_CHLVA2.040e-3344.27Fanconi-associated nuclease n=1 Tax=Chlorella vari... [more]
A0A2P6TYW3_CHLSO6.990e-3345.11Fanconi-associated nuclease n=1 Tax=Chlorella soro... [more]
A9SF58_PHYPA1.790e-3243.01Fanconi-associated nuclease n=1 Tax=Physcomitrium ... [more]
A0A2R6XQH5_MARPO1.810e-3135.80Fanconi-associated nuclease n=2 Tax=Marchantia pol... [more]
A0A2P6VNM0_9CHLO5.350e-3144.50Fanconi-associated nuclease n=1 Tax=Micractinium c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1983contigEcto-sp13_S_contig1983:9685..13735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score560.1
Seed ortholog evalue6.9e-157
Seed eggNOG ortholog2880.D7FNK3
Model size2048
KEGG koko:K15363
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
Ec32 ortholog descriptionVRR-NUC domain
Ec32 orthologEc-01_005130.2
EC3.1.4.1
Cds size975
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1983.6427.1prot_Ecto-sp13_S_contig1983.6427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1983 10304..13281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.343986-UTR-Ecto-sp13_S_contig1983:9684..103031681463000.343986-UTR-Ecto-sp13_S_contig1983:9684..10303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1983 9685..10303 -
1681463000.4174871-UTR-Ecto-sp13_S_contig1983:13281..137351681463000.4174871-UTR-Ecto-sp13_S_contig1983:13281..13735Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1983 13282..13735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.3549058-CDS-Ecto-sp13_S_contig1983:10303..104711681463000.3549058-CDS-Ecto-sp13_S_contig1983:10303..10471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 10304..10471 -
1681463000.3645563-CDS-Ecto-sp13_S_contig1983:10739..109371681463000.3645563-CDS-Ecto-sp13_S_contig1983:10739..10937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 10740..10937 -
1681463000.3727505-CDS-Ecto-sp13_S_contig1983:11606..118461681463000.3727505-CDS-Ecto-sp13_S_contig1983:11606..11846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 11607..11846 -
1681463000.3808131-CDS-Ecto-sp13_S_contig1983:12056..121401681463000.3808131-CDS-Ecto-sp13_S_contig1983:12056..12140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 12057..12140 -
1681463000.389108-CDS-Ecto-sp13_S_contig1983:12209..122631681463000.389108-CDS-Ecto-sp13_S_contig1983:12209..12263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 12210..12263 -
1681463000.3985803-CDS-Ecto-sp13_S_contig1983:12698..128961681463000.3985803-CDS-Ecto-sp13_S_contig1983:12698..12896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 12699..12896 -
1681463000.4089704-CDS-Ecto-sp13_S_contig1983:13248..132811681463000.4089704-CDS-Ecto-sp13_S_contig1983:13248..13281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 13249..13281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1983.6427.1

>prot_Ecto-sp13_S_contig1983.6427.1 ID=prot_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MSITGRRLNREIGVKSRFVGYGDGAACTVENLVLQHLSQRAEGSWAGWHC
EGSPLRALWALLMWDVIFSPGVADVFQTPFQDAPLDLDFCPLFYLLVGDA
WLANAGTVCRGLSWDRSSVRHLQAIAAGLGGPAMAAVLAALCLNHKHFGG
GLPDLLLMRAVRTDTNASVVAAADEGRDGKIAKGKAAAKAVPPAFEAESE
VSTPAAFVAWLGIDSEVAFDVDGGDERPPPPPTDGGSGKRGQGVARRPPP
PPFKAADMAGLRLETWLLEVKGPSDRLSDRQTAWLRILDRGRALVGVCHV
TEDAGGSHVATATTTTNAIKTKKS*
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mRNA from alignment at Ecto-sp13_S_contig1983:9685..13735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1983.6427.1 ID=mRNA_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:9685..13735- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCTCTTGGCAGTTGCAGTGGTAGCAGCGGCTGCAATAACAGCAGCA GCTGTGAGTACACGGAAAAGGAAACAGCGCCAGTGAAGGCGGATCCTTCC ACAAGGTCGAGCAATGGCGAGAGTGGTGACGTGTTCGCACTACACAAAAA CAGCGGCGGCGGTAGTTCTCCGGCAACCGGTGGCACCGGCGGTGGCACCG GCGGTGGTGGAGGACGCGTTGCGAAGAAGGCGGATCCAGAGGCCGCACCG GAGGCAACAGCAACTGATGCTGCAGCAGAAGCAGCAGTGGCGCGTGCCTT CAGATGCAAAGGCGTGGCTGAGCTGTCGCAGGTGCCGAACCTCTTTGACG ATGAGAGCATTGCGGGAGTGGTTTTAGCGGCGACGGCAGTCTCGGAGGTG ACCACCGCTACCGTGGACGGAGCAGAAAACGACGGGCGAGTGGGCGTCCC GGAGATGAGCATTACGGGGAGGCGGCTTAACCGGGAGGTGCGGACCGGGT TTGTCTCTGTGCTTGTCGGCGCGGTGTTCCACCGTGCCGCATGTGCGGTG GTAGCATTGTCCGCACTCATCGCGCGCTCACGATTGAAACCCCCACCCAC CGCTCCACGTGTTGCGCCGGAATAGTCAGCACTTGCTCCCCCTTGCATGT CGTACCGCTGTCTTGCACGGTTACAGCAATATCAGAGCACAGCACGCGCC TCCTACTGGTTGTCGTCTCTGTTTATGCCCCCCTTTGTTGCCCCGTCCAA CCAACGACCGCCCCGCCCCACCTCCCGTATCCGCGGGCTGTCTTGTATAT ATTTCCGGGTACAAATGTTCCCCTTTCTTTTCACGACAGATCGGCGTGAA GAGCCGGTTTGTGGGATACGGCGATGGCGCGGCGTGCACGGTGGAGAACC TGGTGCTACAGCACCTGTCGCAGCGGGCGGAAGGGAGCTGGGCGGGCTGG CACTGCGAGGGGTCGCCGCTGCGTGCGTTGTGGGCGCTGTTGATGTGGGA CGTGATTTTCAGTCCGGGCGTTGCCGACGTCTTCCAGGTAGCATCTCGCG GAAAAAACCTTGTGCTGTGGTTGAGACTGTCGCAATAGTGAGGGAGCCAG CGAGCGTCGGTTTGTTTTCCAATTTCTGCACTCGCGTTGAACCTGCCAAG CCCGCACGTTGGTTGGTCACACCGAGAGGACTTTTGCCCCTTGATGGCGC TACACAAAGGGGGGTAGGGGTGATACGGTGGCACACGCCCTCTTCCCCCC CTCTTCTTGCTGTTGTTGATGCCTAGCCAGATATCAGGGATTGAGTTATT GATGCCTGAAGCTTCAAAATGCACTGTCTGGGACCATAACGCGTTTTTTT TCGTCTTTCGCGTGCCTATTCCGCCCCACCACCACCCCGCTGTCACGGCG GCCTTCCTTCTCTGTCCTTGTCATTCCTGTGACACCGCCCACCCGCCTTC CCGTCCGCGCGTGCAACAACAGACGCCTTTCCAAGACGCGCCCCTCGACC TGGACTTCTGCCCTCTCTTCTACCTCAACCGGCGGACAGCCGTGGACGCA CGCCTGGCAGAACTCCGGGCCGCTTCTGCTGCCGAGTTGGTCGCTCTGGT GGGAGACGCCTGGCTAGCCAACGCCGGCACGGTGTGCCGTGGCCTTAGCT GGGACAGGTCGTCCGTTCGCCACCTTCAGGTGCTGCTGGTTTGCGGCGTT TTCCGATCATACGGCCGGGCTTGGCGTAGCGTTCTTCGCTCTGCTGCCGG AGCCTAATGTGGCCGATCGTGTTGTCGCAGAAGGCGTGGTTTCTTGTTTG GTTGTCATCTCTCATTATCACCTCTCTCGCGTAGACCACCCCACGCCGTG TTTCGTCGCGGTTTCGGTTGATTGTTCCCTCCTCTCTAGGCGATAGCGGC GGGGCTCGGAGGGCCTGCGATGGCCGCAGTTTTAGCCGCCCTTTGCCTGA ACCACAAGCACTTCGGGGGCGGTTTGCCCGACCTGCTTTTGATGCGAGCG GTGCGGACGGACACGAACGCCTCCGTTGTAGCCGCTGCCGACGAAGGCCG AGACGGCAAAATCGCGAAGGGAAAGGCGGCGGCGAAGGCGGTACCCCCCG CTTTTGAAGCCGAGTCGGAAGTGTCGACGGTGCGTTTCTCCGAGGTAGAG GTTCGTTGAAGGGGTGAGGTACACAGGTGAACGATCATGCTGCCTTGTTG TGTACGTTGTGTTTTCGGCGTCTCCGGTTGCCACTACGGTTGTTGAGCGC GAAGGTCTTCCCCGTGCTCTTTCTCTCGCGGCCATCTCGCAATATTCGAC GAGACAGTGAGCGGTTGATAAACAATTCGCCACGAACCATCGTCCACCGC GGACGCAGAGAGAAGGGCCATGTGGACTGCTGCTGCCAGAGTTCCCCGTT TGCACAACCCCAACCCGACGACAACTGAGATCGAACCCGAGACCACAAAA ATTTCTCGGCACGAAAACTGCGGTCCAGCTTGTGCATATCAACTCCTTCC CTTGCCTGCTTTCTGGCGTGCAGCACGCCAAGTCTCTCGCCCGACCGCCT GTCTCCTTACAGAAACGATCCGCCTTCACGACTCTCGTGCCTGCCGTTTT TGCCGCTACGCCATCGACCCACCCACCCACCGCGTGTAACATGACAATTG ACTGGGGTGCCTTGCTTGCTCGCTCGATCGCTTGGCTTGCTTGTGCGTGC TGCTGGTGGCCCCATCTTATATACGGGTCTACGCGCCCGTCTGCCGCGTG CCTGACTTTCTGGCTCCACTATCTGACCACGCGGCAACGACACGGCAGCC GGCGGCGTTTGTTGCCTGGCTCGGGATCGACTCGGAGGTTGCGTTCGATG TCGACGGAGGAGATGAACGGCCGCCGCCGCCTCCTACCGACGGAGGCAGT GGAAAGAGAGGCCAAGGAGTTGCCAGAAGACCGCCCCCGCCGCCGTTCAA GGCAGCTGACATGGCAGGCTTACGGCTGGAGACTTGGTTGCTGGAAGTAG GTCGATTGTGCACTGTCGGTGTGGTTGTTTTCCATATGCTTCGGTTGGTT GACGACACCGCTCACCTGGCATGCGTTCCTCTCGTCCTTGACGCCTCTCA GCGCGCGAGGTGCTCTCCTTATGTCGTATGGCATTCTCTCGCACCCATGT AATCTGCTCTCTCGCGCACACTCTTTCTCTGCTTGCTGTGTGCGCTCCAC CGTCAACATTCAAAACCAATTTTAAGACTCGGAAATCGCTCCTATGTGCC GCGTCGCTGCGTAGGTCAAGGGCCCCAGCGACCGATTGTCCGACCGGCAG ACGGCTTGGCTACGCATCTTGGACCGGGGCCGCGCCCTCGTGGGGGTGTG CCACGTTACCGAAGATGCCGGTGGCAGCCACGTCGCGACGGCTACGACTA CGACCAACGCCATCAAGACCAAGAAATCGTGAAGAAAGGAGTTAGTCCAT AGGAAAACCGGGCGCAAACCACACTAGAATGGGGCGTGAATTTTCGTAGG CTTCGTTGTTTTGGGGTACCAGAGGATTTCGCTGCCACAAGGTCGGGGAT TGGTGTGTAACATGGTTCTTTTTCTAGCAGTGTAGACTAGATGAAAAAAC TAGGCGTTCTCGGCGGTAAATTCCCGGACAACGTAAATCTATGTCTGCGT TGTAGATAGGATAGTGAAGTAGCGACCAAGCTGTTGACCTTTGCTTCATT TACGGCCTTTTCTCGAGACGGCGTGCGTTATTCTCGTGCACCGAAGGGAA TACTGAAGTGTGTTTGTCCCGAAAGAGTACGCTGCTTTCGTTCGGTAGTT TTGCTGTTGTTGCTTGGGCTTCTCGGGCTTGATGCGTATCGTGCGGGTAG GTGACGAACTTGTCGCCCTGTGGACGAAGCTCCTGAGCCGGTCGCTTTCC ACCATGTCTTACTGGCATTGCAGCGCCTACCGTAACCCTTTTAGGTGGTC AAGTCTAAACCGATCGCCCCGTGTGGGGTAACTTCAAGCAACACGTAGCG GCTTGGGTGTACTGCGAAATTCCAGCGAGGCACCTTGCACGTAGCAGACA G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1983:9685..13735-

>mRNA_Ecto-sp13_S_contig1983.6427.1 ID=mRNA_Ecto-sp13_S_contig1983.6427.1|Name=mRNA_Ecto-sp13_S_contig1983.6427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:9685..13735- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCATTACGGGGAGGCGGCTTAACCGGGAGATCGGCGTGAAGAGCCG
GTTTGTGGGATACGGCGATGGCGCGGCGTGCACGGTGGAGAACCTGGTGC
TACAGCACCTGTCGCAGCGGGCGGAAGGGAGCTGGGCGGGCTGGCACTGC
GAGGGGTCGCCGCTGCGTGCGTTGTGGGCGCTGTTGATGTGGGACGTGAT
TTTCAGTCCGGGCGTTGCCGACGTCTTCCAGACGCCTTTCCAAGACGCGC
CCCTCGACCTGGACTTCTGCCCTCTCTTCTACCTCCTGGTGGGAGACGCC
TGGCTAGCCAACGCCGGCACGGTGTGCCGTGGCCTTAGCTGGGACAGGTC
GTCCGTTCGCCACCTTCAGGCGATAGCGGCGGGGCTCGGAGGGCCTGCGA
TGGCCGCAGTTTTAGCCGCCCTTTGCCTGAACCACAAGCACTTCGGGGGC
GGTTTGCCCGACCTGCTTTTGATGCGAGCGGTGCGGACGGACACGAACGC
CTCCGTTGTAGCCGCTGCCGACGAAGGCCGAGACGGCAAAATCGCGAAGG
GAAAGGCGGCGGCGAAGGCGGTACCCCCCGCTTTTGAAGCCGAGTCGGAA
GTGTCGACGCCGGCGGCGTTTGTTGCCTGGCTCGGGATCGACTCGGAGGT
TGCGTTCGATGTCGACGGAGGAGATGAACGGCCGCCGCCGCCTCCTACCG
ACGGAGGCAGTGGAAAGAGAGGCCAAGGAGTTGCCAGAAGACCGCCCCCG
CCGCCGTTCAAGGCAGCTGACATGGCAGGCTTACGGCTGGAGACTTGGTT
GCTGGAAGTCAAGGGCCCCAGCGACCGATTGTCCGACCGGCAGACGGCTT
GGCTACGCATCTTGGACCGGGGCCGCGCCCTCGTGGGGGTGTGCCACGTT
ACCGAAGATGCCGGTGGCAGCCACGTCGCGACGGCTACGACTACGACCAA
CGCCATCAAGACCAAGAAATCGTGA
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