mRNA_Ecto-sp13_S_contig19826.6423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE) HSP 1 Score: 553 bits (1425), Expect = 1.570e-190 Identity = 370/461 (80.26%), Postives = 380/461 (82.43%), Query Frame = 1
Query: 1 WKSHLDNRLASGXXXXXXX---VRAPAGFEEGPILVGEXXXXXXXXA-----------VKGVARRGGLAGSGGGQLRTALGTRTTNARVSTPGRPAGNGVDGGERRPVSGGRRRLETATAYPAVGEA-GGXXXXSCSGSSGVPYPRPSSGSLRPSSSSRNPYDARDHAGRPSAAAADATAAASRRWTARGEYEGAGKQQXXXXXXXXXXXXXXXXXXXXXX---------HSFGVEDLEEDGVADDGVGGPAPVGAAAKERSSYALLGGPPRERPLSATA---TAALAAAPAITTTAADWLSAGEDDYRDGGAVWRDWTAPALAVREAPEAAGAISAPGSLRSGAAATKFSVGDTLGLGEAALGDPAHGRRGGAASAVRGAPGRGLLEGGGVYGTSGGGGGAPRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQGKRAGDAPP 1302
W+SHLDNRLASGXXXXXXX VRAPAGF EG ILVGEXXXXXXXX VKGVARRGG+AG GGGQLRTALGTRTTNAR PAG+GV GERRPVSGG RRLET+TAYPAVGE+ GGXXXX CSGSSGVPYPRP+SGSLRP SSSRNPYDARDHAGR SAAA +A AAASRRWTARGEYEG GK Q XXXXXXXXXXXXXXXXX HSFGVEDLEEDGV DDG GPAPVGAA KER SYALLGG ERPLSATA TAALAAAPAI T AADWLSAGEDDYR G AVWRDWTAPA AV APEAAGA SAPGS RSGAAATKFS GD GLGEAALG PAHGRRG A +A RGAPGRGLLEGGGVYGT G GAPRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVG+LEQRLTLTEDRLQQG+RAGDA P
Sbjct: 204 WRSHLDNRLASGXXXXXXXXXSVRAPAGFGEGAILVGEXXXXXXXXXXXXXXXXXXXXVKGVARRGGVAGLGGGQLRTALGTRTTNAR------PAGSGVGEGERRPVSGGGRRLETSTAYPAVGESSGGXXXXXCSGSSGVPYPRPASGSLRPPSSSRNPYDARDHAGRSSAAAGEAAAAASRRWTARGEYEGWGKHQPPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXHSFGVEDLEEDGVVDDGPEGPAPVGAAEKERDSYALLGGRQSERPLSATAAAATAALAAAPAIRTGAADWLSAGEDDYRGGAAVWRDWTAPAPAVGAAPEAAGAFSAPGSFRSGAAATKFSGGDMFGLGEAALGGPAHGRRGEAGAAARGAPGRGLLEGGGVYGTGGXXXGAPRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGLLEQRLTLTEDRLQQGERAGDASP 658
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI) HSP 1 Score: 430 bits (1106), Expect = 3.890e-142 Identity = 289/445 (64.94%), Postives = 293/445 (65.84%), Query Frame = 1
Query: 1 WKSHLDNRLAS-------GXXXXXXXVRAPAGFEEGPILVGEXXXXXXXXA-VKGVARRGGLAGSGGGQLRTALGTRTTNARVSTPGRPAGNGVDGGERRPVSGGRRRLETATAYPAVGEAGGXXXXSCSGSSGVPYPRPSSGSLRPSSSSRNPYDARDHAGRPSAAAADATAAASRRWTARGEYEGAGKQQXXXXXXXXXXXXXXXXXXXXXXHSFGVEDLEEDGVADDGVGGPAPVGAAAKERSSYALLGGPPRERPLSATATA---ALAAAPAITTTAADWLSAGEDDYRDGGAVWRDWTAPALAVREAPEAAGAISAPGSLRSGAAATKFSVGDTLGLGEAALGDPAHGRRGGAASAVRGAPGRGLLEGGGVYGTSGGGGGAPRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQGKRAGDAPP 1302
W+SHLDNRLAS XXXXXXXVRAP GFEEG I XXXXXXXX VKGVARRGGLAGSGGGQ RTALGTRTTNARVSTPGRPAG+GV GGERRPVSGGRRRLETATAYPA DLEEDGVADDGVGGPAPVGAAAKER SY LLGG ERPLSATA A ALAAAPAI T AADWLSAGEDDYR GGAVWRDWTAPA AV APEAAGAISAPGS RSGAAATKFS GD GLGEAALG PAHGRRGGAA+AVRGAPGRGLLEGGGV GT APRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQG+R D P
Sbjct: 335 WRSHLDNRLASVGXXXXXXXXXXXXXVRAPTGFEEGAIXXXXXXXXXXXXXXVKGVARRGGLAGSGGGQPRTALGTRTTNARVSTPGRPAGSGVGGGERRPVSGGRRRLETATAYPA-------------------------------------------------------------------------------------------------------DLEEDGVADDGVGGPAPVGAAAKERDSYELLGGRQSERPLSATAAAGAAALAAAPAIRTAAADWLSAGEDDYRGGGAVWRDWTAPAPAVGAAPEAAGAISAPGSFRSGAAATKFSGGDMFGLGEAALGGPAHGRRGGAAAAVRGAPGRGLLEGGGVCGTGXXXXXAPRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQGERVADTSP 676
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: A0A7S2CER6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CER6_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.820e-8 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 1126 PRRSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRL 1269
P + + R LPE L TLDHIVGQLD++TRT+ +LEQR++LTEDRL
Sbjct: 58 PSQRGVISRDMLPEVLTATLDHIVGQLDVVTRTMSILEQRVSLTEDRL 105
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: UPI001659BF5B (POC1 centriolar protein homolog A-like isoform X4 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659BF5B) HSP 1 Score: 61.2 bits (147), Expect = 2.390e-8 Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1156 ALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
++P+ L TL+HIVGQLD+LT+TV +LEQRLTLTED+L+Q
Sbjct: 31 SMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 70
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: UPI0007B7EE92 (POC1 centriolar protein homolog A-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B7EE92) HSP 1 Score: 60.8 bits (146), Expect = 2.800e-8 Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1156 ALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
++P ALA TL HIVGQLD+LT+TV +LEQRLTLTED+L++
Sbjct: 27 SVPAALASTLQHIVGQLDVLTQTVAILEQRLTLTEDKLKE 66
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: A0A7J7UDW8_MYOMY (POC1 centriolar protein A n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7UDW8_MYOMY) HSP 1 Score: 60.8 bits (146), Expect = 2.950e-8 Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 1132 RSLEVDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
+S + + P+AL TL+HIVGQLD+LT+TV +LEQRLTLTED+L+Q
Sbjct: 19 QSAPREPASTPQALTSTLEHIVGQLDVLTQTVCILEQRLTLTEDKLKQ 66
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: UPI001659089B (POC1 centriolar protein homolog A-like isoform X3 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659089B) HSP 1 Score: 61.2 bits (147), Expect = 6.360e-8 Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1156 ALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
++P+ L TL+HIVGQLD+LT+TV +LEQRLTLTED+L+Q
Sbjct: 70 SMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 109
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: UPI001659BC96 (POC1 centriolar protein homolog A-like isoform X1 n=2 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659BC96) HSP 1 Score: 61.2 bits (147), Expect = 6.670e-8 Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1156 ALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
++P+ L TL+HIVGQLD+LT+TV +LEQRLTLTED+L+Q
Sbjct: 72 SMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 111
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: UPI0007B952DC (POC1 centriolar protein homolog A n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007B952DC) HSP 1 Score: 60.8 bits (146), Expect = 7.340e-8 Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1156 ALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
++P ALA TL HIVGQLD+LT+TV +LEQRLTLTED+L++
Sbjct: 65 SVPAALASTLQHIVGQLDVLTQTVAILEQRLTLTEDKLKE 104
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Match: A0A6P7MMV5_BETSP (POC1 centriolar protein homolog A n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MMV5_BETSP) HSP 1 Score: 65.5 bits (158), Expect = 8.040e-8 Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1123 APRRSLEV-----DRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 1275
AP+RS V G LP LAGTL+HI+GQLD+LT+TV +LEQRLTLTED+L++
Sbjct: 395 APQRSPHVHGSRASDGDLPPGLAGTLEHIMGQLDVLTQTVSILEQRLTLTEDKLKE 450 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19826.6423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19826.6423.1 >prot_Ecto-sp13_S_contig19826.6423.1 ID=prot_Ecto-sp13_S_contig19826.6423.1|Name=mRNA_Ecto-sp13_S_contig19826.6423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=435bp WKSHLDNRLASGGGGGGGSVRAPAGFEEGPILVGEEKEEEDAAAVKGVARback to top mRNA from alignment at Ecto-sp13_S_contig19826:1590..3230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19826.6423.1 ID=mRNA_Ecto-sp13_S_contig19826.6423.1|Name=mRNA_Ecto-sp13_S_contig19826.6423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19826:1590..3230- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19826:1590..3230- >mRNA_Ecto-sp13_S_contig19826.6423.1 ID=mRNA_Ecto-sp13_S_contig19826.6423.1|Name=mRNA_Ecto-sp13_S_contig19826.6423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19826:1590..3230- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |