mRNA_Ecto-sp13_S_contig1982.6422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1982.6422.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE) HSP 1 Score: 562 bits (1448), Expect = 1.500e-190 Identity = 280/305 (91.80%), Postives = 286/305 (93.77%), Query Frame = 1
Query: 1327 MTIPDDQDSRHQSPVFFGYDLVKKPRSRGGALEDHEKPKREDFVVHRKGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDTSVPRPASRRSSSRSTVDGGGSVSSLPPVGDKIVSTPRTPVAAAAAERVGTGAAASGSPAGRRVSLLMEGMHGVITTDKGEGTDSEEKEKPELHTDLTTRAAITLYRSIVGSIIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCT------IDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK 2223
MTIPDDQDSRHQSPVFFGYDLVKKPRS+GGALEDHEKPKREDFV+HR+GKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFED+S RP SRRSS RSTVDG GSVSSLPPVGDK STPRTP AAAAA+RV TGAAASGSP GRRVSLLM+GMHGVITTDKGEG DSEEKEKPELHTDLTT AAITLYRSIVGS IRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCT IDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK
Sbjct: 1 MTIPDDQDSRHQSPVFFGYDLVKKPRSKGGALEDHEKPKREDFVLHRRGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDSSASRPTSRRSS-RSTVDGRGSVSSLPPVGDKTGSTPRTPAAAAAADRVETGAAASGSPPGRRVSLLMKGMHGVITTDKGEGADSEEKEKPELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK 304
BLAST of mRNA_Ecto-sp13_S_contig1982.6422.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI) HSP 1 Score: 566 bits (1459), Expect = 1.260e-185 Identity = 303/365 (83.01%), Postives = 307/365 (84.11%), Query Frame = 1
Query: 430 QQLARRIAKWTQSNQAPQGSTTRAEPWAAXXXXXXXXXXXXXXXXSIVIAPADGVEVRGAVCNTESMGGAAKRTRRRRERQPRRQVDYPEEALAERMAHLLSQRQVAMGNRTKVIKRAQQKAIKAKLAETMYETHKFEEELGGAGQWSSSKRSVELAKLGLEDYHHQCSLVQVGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAVRGEGNLAALKALMGGGSFDRRSSE-----EESVGQNKSSPSSTCQTFPLAPSTRGKVRQRLREVGTTYDSAGLAHPSCFGLMTIPDDQDSRHQSPVFFGYDLVKKPRSRGGALEDHEKPKREDFVVHRKGKSCPVCLVGKPG 1509
QQLARRIAKWTQSNQAPQGS T AEPWAA I PADGVE RG V +T SMGGA KRTRRRR RQPRRQVDY EEAL ERMAHLLSQR +RTK IKRAQQKAIKAKLAE MYETHKFEEELGGAGQW SSKRSVELAKLGLED C QVGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAVRGEGNLAALKALM G SFDRRSS+ E SVGQN SSP STCQ FPLAP+TRGKVRQRLREVGTTYDSAGL HPSCFGLMTIPDDQDSRHQSPVFFGYDLVKKPRSRGGALEDHEKPKREDFVVHRKGK CPVCLVGKPG
Sbjct: 358 QQLARRIAKWTQSNQAPQGSITGAEPWAAVVTTPPASDDD--------IVPADGVEERGVVRDTVSMGGAGKRTRRRR-RQPRRQVDYAEEALTERMAHLLSQR-----DRTKAIKRAQQKAIKAKLAEMMYETHKFEEELGGAGQWGSSKRSVELAKLGLED----CRSGQVGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAVRGEGNLAALKALMSGASFDRRSSQGEARQEASVGQNNSSPCSTCQAFPLAPATRGKVRQRLREVGTTYDSAGLVHPSCFGLMTIPDDQDSRHQSPVFFGYDLVKKPRSRGGALEDHEKPKREDFVVHRKGKPCPVCLVGKPG 704
BLAST of mRNA_Ecto-sp13_S_contig1982.6422.1 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.950e-17 Identity = 87/350 (24.86%), Postives = 138/350 (39.43%), Query Frame = 1
Query: 1456 VVH----RKGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDTSVPRPASRRSSSRSTVDGGGSVSSLPPVGDKIVSTPRTPVAAAAAERVGTGAAASGSPAGRRVSLLMEGMHGVITTDKGEGTDSEEKEKPELHTDLTTRAAITLYRSIVGSIIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIKTRENIERYLVY-ETGLGKQAVLEVFDHLVGCPKRP-ENDPIQKVLCGLMEHRVAQQQLVDNDDDSAEVANRNRVLLDAEKTRKQTALEKK 2487
V+H R CP+CLV KPGCP CW+FP+G+ P D+ + G +G H ++ T KP++HTDLTT A+ +R I S + VK IP G L + + V YL L+R+ + G A + +PT+ G++ LDN +PE++ TL ++T ++ L Y V +L + +I + ++L+ + L Q ++ HL G + ND +Q+ L L E ++ + V DD E + + E+ RK L KK
Sbjct: 131 VIHPAWLRPEDICPICLVRKPGCPFCWEFPKGFAPVDYEHKG-----------------------------------------------------------------------KKGEHDLVDT------------KPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQARLFIPTVNGIYCLDNDQVPESELTLALYTADIALQRYGFMGEAFPVVLLHA--MGEIGLFHDTFQHLIERQVHLPTQPKTDIIHHLEGLVEITIGNDALQESLLQLFEKQLTLDRKVAQDDLDEEAKELHEKMHAEEEMRKAMELRKK 395 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1982.6422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1982.6422.1 >prot_Ecto-sp13_S_contig1982.6422.1 ID=prot_Ecto-sp13_S_contig1982.6422.1|Name=mRNA_Ecto-sp13_S_contig1982.6422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=908bp MSHTSGRWDSFTIEGTKQRLNLTPGALTDFAEHLILEARDIGQNVTSVTSback to top mRNA from alignment at Ecto-sp13_S_contig1982:176..12852+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1982.6422.1 ID=mRNA_Ecto-sp13_S_contig1982.6422.1|Name=mRNA_Ecto-sp13_S_contig1982.6422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12677bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1982:176..12852+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1982:176..12852+ >mRNA_Ecto-sp13_S_contig1982.6422.1 ID=mRNA_Ecto-sp13_S_contig1982.6422.1|Name=mRNA_Ecto-sp13_S_contig1982.6422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1982:176..12852+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |