mRNA_Ecto-sp13_S_contig19786.6404.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19786.6404.1
Unique NamemRNA_Ecto-sp13_S_contig19786.6404.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.900e-42
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:    1 MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 237
            MPSYALVQGTLQKHLRLDSAAAAAVTLLPDP APHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDK EIERRHDMVGL
Sbjct:  182 MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKAEIERRHDMVGL 260
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A835YUY7_9STRA (Muts protein-like protein 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.090e-24
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    7 SYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 237
            SY +VQG+L+++++LDSAAA AVTLLPDPA P    S++ VLNRCKTKMGSRLLERWLRQPL D+  IE R D+V +
Sbjct:  130 SYRVVQGSLEQYVKLDSAAADAVTLLPDPAFPGANASIYAVLNRCKTKMGSRLLERWLRQPLRDRAAIEARQDLVAV 206
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7S2UYD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYD8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.960e-23
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    7 SYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            +Y L  G L   ++LDSAA  A  LLPDP  P++YGS+F VLNRC+T+MG RLL RWLRQPL D E+I+ R DMV
Sbjct:    4 AYELRPGDLDSFMKLDSAAIEATNLLPDPTHPNKYGSVFGVLNRCRTRMGERLLVRWLRQPLIDLEQIKARQDMV 78
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7S2RNW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNW5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   16 LVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQ-YGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 237
            L  GTL+  +RLDSAAA A+ L PD   P Q  GS+F +LN+C+TKMGSRLL+ WLRQPL D+  IE R+D VGL
Sbjct:  199 LFLGTLESCMRLDSAAADAIMLFPDKRGPTQPNGSVFTILNQCRTKMGSRLLDSWLRQPLLDRAAIEERYDFVGL 273
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7R7VKH3_ASPCH (DNA mismatch repair protein MSH3 n=2 Tax=Aspergillus TaxID=5052 RepID=A0A7R7VKH3_ASPCH)

HSP 1 Score: 74.7 bits (182), Expect = 7.160e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A017SNL8_9EURO (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus ruber CBS 135680 TaxID=1388766 RepID=A0A017SNL8_9EURO)

HSP 1 Score: 74.7 bits (182), Expect = 7.250e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKNMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A1L9VPE9_ASPGL (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus glaucus CBS 516.65 TaxID=1160497 RepID=A0A1L9VPE9_ASPGL)

HSP 1 Score: 74.7 bits (182), Expect = 7.250e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: H3GTV2_PHYRM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTV2_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 9.730e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQY----GSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 237
            Y L QG L   ++LDSAA  ++ LLP+P+A        GS+ ++LNR KT MG RLLERW+RQPL D E+IE R  +V L
Sbjct:  178 YTLSQGNLASAMQLDSAAVWSLNLLPEPSATTTGVRFGGSVLEILNRGKTPMGRRLLERWIRQPLLDVEQIETRQSLVQL 257
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A146FEY2_ASPKA (DNA mismatch repair protein MSH3 n=4 Tax=Aspergillus TaxID=5052 RepID=A0A146FEY2_ASPKA)

HSP 1 Score: 74.3 bits (181), Expect = 9.780e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            Y L Q  L + ++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL DK+EIE+R  +V
Sbjct:  288 YRLYQHDLSQFMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLV 361
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BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A1M3TIW2_ASPLC (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus luchuensis (strain CBS 106.47) TaxID=1137211 RepID=A0A1M3TIW2_ASPLC)

HSP 1 Score: 74.3 bits (181), Expect = 9.900e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   10 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 231
            Y L Q  L + ++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL DK+EIE+R  +V
Sbjct:  288 YRLYQHDLSQFMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLV 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE1.900e-4297.47DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YUY7_9STRA5.090e-2466.23Muts protein-like protein 2A n=1 Tax=Tribonema min... [more]
A0A7S2UYD8_9STRA9.960e-2360.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RNW5_9STRA2.440e-1860.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R7VKH3_ASPCH7.160e-1450.00DNA mismatch repair protein MSH3 n=2 Tax=Aspergill... [more]
A0A017SNL8_9EURO7.250e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]
A0A1L9VPE9_ASPGL7.250e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]
H3GTV2_PHYRM9.730e-1451.25DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A146FEY2_ASPKA9.780e-1450.00DNA mismatch repair protein MSH3 n=4 Tax=Aspergill... [more]
A0A1M3TIW2_ASPLC9.900e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19786contigEcto-sp13_S_contig19786:790..2799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score161.0
Seed ortholog evalue2.3e-37
Seed eggNOG ortholog2880.D8LDL8
Preferred nameMSH2
Model size239
KEGG koko:K08735
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006298,GO:0006301,GO:0006310,GO:0006311,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0012501,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0035556,GO:0035639,GO:0035822,GO:0036094,GO:0040020,GO:0042623,GO:0042771,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045128,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0110029,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:2000241,GO:2000242
Exons3
EggNOG free text desc.negative regulation of reciprocal meiotic recombination
EggNOG OGsCOG0249@1,KOG0219@2759
Cds size237
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.7176816-CDS-Ecto-sp13_S_contig19786:789..9261681462998.7176816-CDS-Ecto-sp13_S_contig19786:789..926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19786 790..926 +
1681462998.731582-CDS-Ecto-sp13_S_contig19786:1865..19291681462998.731582-CDS-Ecto-sp13_S_contig19786:1865..1929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19786 1866..1929 +
1681462998.740753-CDS-Ecto-sp13_S_contig19786:2763..27991681462998.740753-CDS-Ecto-sp13_S_contig19786:2763..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19786 2764..2799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19786.6404.1prot_Ecto-sp13_S_contig19786.6404.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19786 790..2799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19786.6404.1

>prot_Ecto-sp13_S_contig19786.6404.1 ID=prot_Ecto-sp13_S_contig19786.6404.1|Name=mRNA_Ecto-sp13_S_contig19786.6404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTK
MGSRLLERWLRQPLTDKEEIERRHDMVGL
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mRNA from alignment at Ecto-sp13_S_contig19786:790..2799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19786.6404.1 ID=mRNA_Ecto-sp13_S_contig19786.6404.1|Name=mRNA_Ecto-sp13_S_contig19786.6404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19786:790..2799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCCTACGCTTTGGTGCAGGGGACGCTGCAGAAGCACCTGAGGCT
CGACAGCGCAGCGGCGGCAGCGGTCACCCTGCTCCCGGACCCCGCAGCCC
CTCACCAGTACGGCAGCCTTTTCGACGTGCTCAACAGGTAATTGGCGAAC
TACGTTCCGACGTGTGTGCTCTGGAGGTGCATGTACCGTGAATGTCTTGC
TGCGGGACTGATTGTACTCTCGTGTTTTGGGCTCTCTTTCCCCCCAAGCC
ATTTGCCTGTTGGTTGGCAGCAGTAGCAGCAGCATCGTCTGGAGCAGGAG
CGTCTTCTTGATTGTTTCATCTTCAATCCTAGTCCCAACCCTGTCCCATC
CTAAAACCTACTCATAACCCTTCTTTTCAGTATGGCTACGTACTTGTGAG
GATCAAGCAGATGTTTGGTGGTTGTTTAATATTTGCCCTACGCCCCGCCG
GTTTGGCTGCACTGCGCCACAGTTTCAACACAAGTTACCGTCGTCCTTAA
GATAATCGTTGTTGTGATGTACCAGCGGTGTTGCGGCTGTAGCGACTGGT
ATTGGCCCGTAGGAGACACAGTCGAACATGTGTTGGTCTATGACGACAAT
CGCTCTGTTGTTTGGAAGGACACGCCCCAATGCTTGAGTGCTCCCGGTCG
CCAAGCCGTGTGTGCTGTTGTTGTTGTTGTTGTTGTAGTTGTTGTTGTTA
TTGTCTCCACGTTGACAGCCGATCCGATCTCTGTCACACCTGCTAAAGTC
GGTTCTGGTCAGACCGCACGCACGCCTTCCTTGGTCACAGGCTATTGGAA
AATAATACTTTTGTAGTGAACGGAGCCAGATAAATAAATTGAACGTATAG
TAGACAATAACCAAATTGCTGATACCGTTCCAACTCATGTACGATGCGAT
ACGGTACGCTGCTGTTGACACTTGAGAACACTGCTTGATGTAGGGGTGCC
CGCCATGCCTCTTCGTGGTTCATTTTCCAGCTTGTATGCCAAATCGTGTG
CTGACTGTTGTGCTGTGGTGTGGTTCTGGGTGTGATGTGGGCATGTCGTG
CGGTGTGTGCTGTGTTTGGTGTCAAGGTGCAAGACGAAGATGGGCAGTCG
GTTGCTGGAGCGGTGGTTGAGGCAGCCCCTCACCGATAAGGTGAGGAAGA
CGCATTCCATATCCTTATGTATGTCCTCAACACCCCACAACTCCATGAAC
CTTTCACCTGTGACATGATACAGTATTGATACTGCATGTTGCACCATGAT
GTCCCGGCCGGCTTCGTATCTCTCCTTTACTCTTCGCACGTACGGCCTCT
GCTGTGTAAAACCGTACGTAAGGCCGGTCGCCCTGAACAACACCGATGAA
ATCGCGTAACACAGATGGGATGTTCCATCTGTCTCACACTCTGAATAGTG
CCGGGTGCCTGTTGTCAGTACACACCGAATTCAGGCCGGCGAAATCCGTT
GGCACTTTTTGCGGCCTTGTACGGGCATCACTGCTGCGGTCTTGACCCGG
CACATGCTATTCCCCTCCCTCCTTCCCTCCCTTCGTTCCATTAGCCCTGT
CGTACGACGTAGCCTCAAGTCTCGTTGTCCTTATCTTGCAACCGTTGCCC
GCACCGATAAGATATTGCACTGTAGCCATTGGACACCAAACCGTTCAACC
CAGAAAGGATTCTTGCCTTGGCCTTTTCCCAGCTAGATACTGGCAAAAGA
GACCTTTTTTACCTACTATCAAACACGGCTAAATGATGTAAATACTCGGC
CTGTCGTTCTACCAATCTCGACTGCCTGAACTCGGGCACTCGATACTCAC
ATTTGTTGACGTGACATGTCGCATCGAGCGCTACATAACCCGGTCTTCGA
CTTTTATGTAGACTGACCTTGCTGCTGCTTTCCATCAGCCCTCTTCTTCT
CGATTCGTTCTCGCGTCAACTGGTTGCGCCTCCTGCCCGCTGCACAACAC
TACTCCCGCCGCACAACGCTACAGGAGGAGATCGAACGGCGGCATGACAT
GGTTGGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19786:790..2799+

>mRNA_Ecto-sp13_S_contig19786.6404.1 ID=mRNA_Ecto-sp13_S_contig19786.6404.1|Name=mRNA_Ecto-sp13_S_contig19786.6404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19786:790..2799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCCTACGCTTTGGTGCAGGGGACGCTGCAGAAGCACCTGAGGCT
CGACAGCGCAGCGGCGGCAGCGGTCACCCTGCTCCCGGACCCCGCAGCCC
CTCACCAGTACGGCAGCCTTTTCGACGTGCTCAACAGGTGCAAGACGAAG
ATGGGCAGTCGGTTGCTGGAGCGGTGGTTGAGGCAGCCCCTCACCGATAA
GGAGGAGATCGAACGGCGGCATGACATGGTTGGGCTG
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