prot_Ecto-sp13_S_contig19786.6404.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19786.6404.1
Unique Nameprot_Ecto-sp13_S_contig19786.6404.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.900e-42
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 0
Query:    1 MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 79
            MPSYALVQGTLQKHLRLDSAAAAAVTLLPDP APHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDK EIERRHDMVGL
Sbjct:  182 MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKAEIERRHDMVGL 260          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A835YUY7_9STRA (Muts protein-like protein 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.090e-24
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0
Query:    3 SYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 79
            SY +VQG+L+++++LDSAAA AVTLLPDPA P    S++ VLNRCKTKMGSRLLERWLRQPL D+  IE R D+V +
Sbjct:  130 SYRVVQGSLEQYVKLDSAAADAVTLLPDPAFPGANASIYAVLNRCKTKMGSRLLERWLRQPLRDRAAIEARQDLVAV 206          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7S2UYD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYD8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.960e-23
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    3 SYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            +Y L  G L   ++LDSAA  A  LLPDP  P++YGS+F VLNRC+T+MG RLL RWLRQPL D E+I+ R DMV
Sbjct:    4 AYELRPGDLDSFMKLDSAAIEATNLLPDPTHPNKYGSVFGVLNRCRTRMGERLLVRWLRQPLIDLEQIKARQDMV 78          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7S2RNW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNW5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    6 LVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQ-YGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 79
            L  GTL+  +RLDSAAA A+ L PD   P Q  GS+F +LN+C+TKMGSRLL+ WLRQPL D+  IE R+D VGL
Sbjct:  199 LFLGTLESCMRLDSAAADAIMLFPDKRGPTQPNGSVFTILNQCRTKMGSRLLDSWLRQPLLDRAAIEERYDFVGL 273          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A7R7VKH3_ASPCH (DNA mismatch repair protein MSH3 n=2 Tax=Aspergillus TaxID=5052 RepID=A0A7R7VKH3_ASPCH)

HSP 1 Score: 74.7 bits (182), Expect = 7.160e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A017SNL8_9EURO (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus ruber CBS 135680 TaxID=1388766 RepID=A0A017SNL8_9EURO)

HSP 1 Score: 74.7 bits (182), Expect = 7.250e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKNMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A1L9VPE9_ASPGL (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus glaucus CBS 516.65 TaxID=1160497 RepID=A0A1L9VPE9_ASPGL)

HSP 1 Score: 74.7 bits (182), Expect = 7.250e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            Y L Q  L ++++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL D +EIE+RH +V
Sbjct:  283 YQLYQHDLSQYMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDIKEIEKRHTLV 356          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: H3GTV2_PHYRM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTV2_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 9.730e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQY----GSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVGL 79
            Y L QG L   ++LDSAA  ++ LLP+P+A        GS+ ++LNR KT MG RLLERW+RQPL D E+IE R  +V L
Sbjct:  178 YTLSQGNLASAMQLDSAAVWSLNLLPEPSATTTGVRFGGSVLEILNRGKTPMGRRLLERWIRQPLLDVEQIETRQSLVQL 257          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A146FEY2_ASPKA (DNA mismatch repair protein MSH3 n=4 Tax=Aspergillus TaxID=5052 RepID=A0A146FEY2_ASPKA)

HSP 1 Score: 74.3 bits (181), Expect = 9.780e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            Y L Q  L + ++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL DK+EIE+R  +V
Sbjct:  288 YRLYQHDLSQFMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLV 361          
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Match: A0A1M3TIW2_ASPLC (DNA mismatch repair protein MSH3 n=1 Tax=Aspergillus luchuensis (strain CBS 106.47) TaxID=1137211 RepID=A0A1M3TIW2_ASPLC)

HSP 1 Score: 74.3 bits (181), Expect = 9.900e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    4 YALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMV 77
            Y L Q  L + ++LDS+A  A+ L+P P    +  SLF +LN CKT +GSRLL +WL+QPL DK+EIE+R  +V
Sbjct:  288 YRLYQHDLSQFMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLV 361          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19786.6404.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE1.900e-4297.47DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YUY7_9STRA5.090e-2466.23Muts protein-like protein 2A n=1 Tax=Tribonema min... [more]
A0A7S2UYD8_9STRA9.960e-2360.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RNW5_9STRA2.440e-1860.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R7VKH3_ASPCH7.160e-1450.00DNA mismatch repair protein MSH3 n=2 Tax=Aspergill... [more]
A0A017SNL8_9EURO7.250e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]
A0A1L9VPE9_ASPGL7.250e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]
H3GTV2_PHYRM9.730e-1451.25DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A146FEY2_ASPKA9.780e-1450.00DNA mismatch repair protein MSH3 n=4 Tax=Aspergill... [more]
A0A1M3TIW2_ASPLC9.900e-1450.00DNA mismatch repair protein MSH3 n=1 Tax=Aspergill... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 36..77
e-value: 2.7E-18
score: 66.9
NoneNo IPR availableGENE3D1.10.1420.10coord: 15..79
e-value: 5.6E-25
score: 90.5
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 5..77
IPR032642DNA mismatch repair protein Msh2PANTHERPTHR11361:SF35DNA MISMATCH REPAIR PROTEIN MSH2coord: 5..77
IPR036187DNA mismatch repair protein MutS, core domain superfamilySUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 18..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19786contigEcto-sp13_S_contig19786:790..2799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19786.6404.1mRNA_Ecto-sp13_S_contig19786.6404.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19786 790..2799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19786.6404.1 ID=prot_Ecto-sp13_S_contig19786.6404.1|Name=mRNA_Ecto-sp13_S_contig19786.6404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPSYALVQGTLQKHLRLDSAAAAAVTLLPDPAAPHQYGSLFDVLNRCKTK
MGSRLLERWLRQPLTDKEEIERRHDMVGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
IPR032642Msh2
IPR036187DNA_mismatch_repair_MutS_sf