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Homology
BLAST of mRNA_Ecto-sp13_S_contig10041.64.1 vs. uniprot
Match: D7FRV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV2_ECTSI) HSP 1 Score: 661 bits (1705), Expect = 4.620e-232 Identity = 344/382 (90.05%), Postives = 354/382 (92.67%), Query Frame = 3
Query: 633 DETGTSNFQTVSNDTLFSVSCGGCSTVTPAPTAATTAAPTIFVGGEDCGALTVSAPSAPYLEGCYFDTRLTQSWYSEFVEVELPSFTQDGSLAAGQLWISWLSYATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEAYPGNTTWDCDLDGDYSTTFGIEKTKFSVTCGCATGSAQGGTLSESPXXXXXXXXXXXXXXXGCMAGDPFLVTLPAVPQVEGCYVDSNLNDTAGYPIYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFGTEEPRVICSRGMDGSDGINGHPAHEVASAYDDTPGVIFWHCDLEGTGNVSYINASSSIFRIECGCASSLDFNRAMGRENANQRSLRTTLVLFS-LSMAMGVVLGAL 1775
DETGTSNFQTVSNDTLFSVSCGGCS+ TPAPTAATTAAPTIF+GGEDCGALTVSAPSAP++EGCYFDTRLTQSWYSEFVE+ELPSFTQDGSLAAGQLW+SWL+YATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEA P NTTWDCDLDGDYSTTFGIE+TKFSVTCGCATG XXXXXXXXXXXXXXX C+AGDPFLVTLPAVPQVEGCYVDSNLNDTAGY IYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFG EEPRVICSRGMD SDG NGHPAH VASAYDDTPGVIFWHCDLEGTGNVSY+NASSSI RIECGC SSLDFN A GR NANQRSL TTLVL S LSMAMGVVLGAL
Sbjct: 44 DETGTSNFQTVSNDTLFSVSCGGCSSATPAPTAATTAAPTIFIGGEDCGALTVSAPSAPHVEGCYFDTRLTQSWYSEFVEIELPSFTQDGSLAAGQLWLSWLTYATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEATPANTTWDCDLDGDYSTTFGIEETKFSVTCGCATGGXXXXXXXXXXXXXXXXXXXXXXXXXXCVAGDPFLVTLPAVPQVEGCYVDSNLNDTAGYAIYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFGIEEPRVICSRGMDSSDGTNGHPAHGVASAYDDTPGVIFWHCDLEGTGNVSYMNASSSILRIECGCPSSLDFNGATGRANANQRSLGTTLVLLSSLSMAMGVVLGAL 425
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2152 |
| Hectar predicted targeting category | signal peptide |
| Exons | 8 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-23_004050.1 |
| Cds size | 1707 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462502.8609338-UTR-Ecto-sp13_S_contig10041:1..375 | 1681462502.8609338-UTR-Ecto-sp13_S_contig10041:1..375 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10041 2..375 - |
| 1681462502.9536884-UTR-Ecto-sp13_S_contig10041:4687..4758 | 1681462502.9536884-UTR-Ecto-sp13_S_contig10041:4687..4758 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10041 4688..4758 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462502.869614-CDS-Ecto-sp13_S_contig10041:375..572 | 1681462502.869614-CDS-Ecto-sp13_S_contig10041:375..572 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 376..572 - |
| 1681462502.881568-CDS-Ecto-sp13_S_contig10041:986..1140 | 1681462502.881568-CDS-Ecto-sp13_S_contig10041:986..1140 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 987..1140 - |
| 1681462502.8919713-CDS-Ecto-sp13_S_contig10041:1689..2039 | 1681462502.8919713-CDS-Ecto-sp13_S_contig10041:1689..2039 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 1690..2039 - |
| 1681462502.9002433-CDS-Ecto-sp13_S_contig10041:2414..2535 | 1681462502.9002433-CDS-Ecto-sp13_S_contig10041:2414..2535 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 2415..2535 - |
| 1681462502.9086208-CDS-Ecto-sp13_S_contig10041:2807..3133 | 1681462502.9086208-CDS-Ecto-sp13_S_contig10041:2807..3133 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 2808..3133 - |
| 1681462502.9177942-CDS-Ecto-sp13_S_contig10041:3552..3661 | 1681462502.9177942-CDS-Ecto-sp13_S_contig10041:3552..3661 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 3553..3661 - |
| 1681462502.9351444-CDS-Ecto-sp13_S_contig10041:3809..3898 | 1681462502.9351444-CDS-Ecto-sp13_S_contig10041:3809..3898 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 3810..3898 - |
| 1681462502.945082-CDS-Ecto-sp13_S_contig10041:4326..4687 | 1681462502.945082-CDS-Ecto-sp13_S_contig10041:4326..4687 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10041 4327..4687 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10041.64.1 >prot_Ecto-sp13_S_contig10041.64.1 ID=prot_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=569bp
MVHLVFVSHVTSFSIVWSSHVCFACFTPSSLRRQAHPASHPVSFQVYQTP SNLDSARRGILDGARTHIKNNFVNRGSTGRGLEDARALQDACPSGSPLFV SSSMFPSAEGCYVASDTLLSGGEPVYFITSATSPGQTILAAPKDPDDDDE GPLFWGVAYVTSSTAVLQCASVEDASLVNPADAAWMCDETGTSNFQTVSN DTLFSVSCGGCSTVTPAPTAATTAAPTIFVGGEDCGALTVSAPSAPYLEG CYFDTRLTQSWYSEFVEVELPSFTQDGSLAAGQLWISWLSYATNETFWGL FFYPTFTSSSEQLVSVYCLSQEEVTEAYPGNTTWDCDLDGDYSTTFGIEK TKFSVTCGCATGSAQGGTLSESPTPAPTPGPTPSPTVSGCMAGDPFLVTL PAVPQVEGCYVDSNLNDTAGYPIYRSTGGAESADGQSFVLPTGDGPVEET YYKDWTLVLFEFGTEEPRVICSRGMDGSDGINGHPAHEVASAYDDTPGVI FWHCDLEGTGNVSYINASSSIFRIECGCASSLDFNRAMGRENANQRSLRT TLVLFSLSMAMGVVLGAL* back to topmRNA from alignment at Ecto-sp13_S_contig10041:2..4758- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10041.64.1 ID=mRNA_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10041:2..4758- (Ectocarpus species13 EcNAP12_S_4_19m) CCAATCGGGACTCACTGATATCGCAGCCCCAAAGGAGCAGAGCTGAGTAT
GCCCACACGCACGTCACCTCCATGGTACACCTTGTATTCGTGTCGCATGT
CACGTCGTTTTCCATTGTTTGGTCTTCGCATGTTTGCTTCGCATGCTTTA
CGCCATCATCATTGCGCAGACAAGCACACCCCGCTTCTCACCCCGTATCG
TTCCAGGTGTACCAAACACCATCCAACCTTGACTCAGCTCGCCGAGGGAT
TCTCGACGGAGCTAGAACGCACATCAAGAACAATTTCGTGAACAGGGGCA
GCACCGGGAGGGGGTTAGAAGATGCTCGTGCTCTCCAGGACGCGTGTCCC
AGTGGATCCCCCTTGTTCGTCTCGTCGTCGATGTTTCCTTCCGCTGAGGG
GTGCTACGTGGCCTCGGACACACTGCTTTCAGGTAGAGGAGAACGTACCG
TGTGCCTTGAACTGGGTTTGGTAACGCTCATGGCCTTGAGGTCGAGCTGT
TTTTTTAAGGTGAGGTAGACCTTACGTGTGTGCTTTAGCTGGTTTTGTTA
ATGCTCTTGGCGTTGATTGGGGGGTGGTTTCCCGGGGGGGGGGGGGGTTC
TGTTGTGGGGTCGTTTCATATTTTTTGTCATGGACGCCAGTCTACATGTT
TTGGTGGCCTGTGTGCTCATCGGCCTTGGAAACACAGAAGGAGGGCGTAG
AAACATGGACTTTTTTTTTGTTCCCTCCTACTCCTGCCGGGGGTGCCAGT
ACGCGCACGGTCCGGCCGTTTTCGAGATTGAAAAGTGAAACAAGGGGACA
GCCGTTGTGCACGTAGCTAAGTGTATGCTCCTGCTCATGATGTCACCCAC
GCACACACAGGTGGAGAACCGGTATATTTCATCACGTCTGCAACGTCACC
TGGGCAAACCATTCTCGCGGCCCCAAAAGATCCAGACGACGACGACGAGG
TGAGAGGGGACGGAGATGCCATCATGCCATGGGGTATTTTTTGCCTGATG
AGCGCTGGATATTCGTGACAGGACCGGCACCCGTATCGTTCACGTGTTTT
TTCGCGCATGATCACGCTCGCCCTTTATTGTCCCTGAACTATTGCAGGGA
CCACTTTTCTGGGGCGTGGCTTATGTGACGAGCAGTACCGCCGTCCTGCA
GTGTGCGTCAGTAGAGGATGCGTCATTGGTGAACCCCGCGGATGCTGCAT
GGATGTGTGAGTGTAACCGTTGATCAGGGTGGGGCTGACACGAGCTCTTG
TTGTCGTTGCCTTCGTAAATGTACAATCTCCGTCTTCTGCTCAGGACCCC
CTCGGATCCGTACTGGCCCAACCGAGAGTAGCCGCTGTACGTGGTCACAG
GATGATCTTCAAAATATCAGGCACCTAGAAAAGACTCAGAGAAATCATCC
AAGGGCCAGCAATCAGCCAAGTAACATGACCCTAGACAGCAGCAGGTAAG
GAGTCAAAACAAGTACTCTTGTCGGGCACCGTACACGTCAGGCGAAGAGC
ATGATATTGTTTGTCGGACAACGAAAGTGCGACTACCATCAAAGGCTTTC
CTGCGGTAGCCTGCAAACGATGCCCACTCGCTCTTTTTTCATGCTTGCTA
TTTTCATACAACCACCACATGCCAGGTGACGAAACGGGCACATCGAATTT
TCAGACGGTCAGCAACGACACGCTATTCTCGGTTAGTTGCGGCGGGTGTA
GCACGGTTACCCCCGCTCCAACAGCAGCCACGACCGCGGCGCCTACGATC
TTCGTCGGCGGCGAAGACTGCGGGGCACTAACGGTGTCAGCGCCTTCGGC
CCCCTACCTCGAAGGCTGCTACTTCGACACAAGGTTGACTCAGAGCTGGT
ACTCCGAGTTCGTGGAGGTCGAGTTGCCTAGCTTCACCCAAGATGGGTCT
CTGGCGGCGGGGCAGCTCTGGATATCATGGTTGAGCTACGCTACGAACGA
GGTGAGCCAGATACCGCCCCGGGGGCCTTGGCCACCCGGTCGCAACACAG
GACGCACCTCGTACTTCTGAAAAGCAGTTACTAGTGTGTGGCGTTCTATT
CCCAAATTCGGGCGCCCACGCAACTGTTTGAGCACTTCGACCGCTGACGC
ACCTCTTCTTCGAAATCACGTCTTTTTTTGCAGCCTCTGGCCGACAAGGA
GTCCTTGCACCCACCCCGTTTGATACATCTGTCTCTGTTGCTCCTTCTTT
TCCGTGCACTTTTCTCTCCCCAGACGTTCTGGGGCCTCTTCTTCTACCCC
ACTTTTACTTCCTCGAGCGAGCAATTGGTATCTGTCTACTGCCTCTCGCA
AGAAGAGGTAACGGAGGCTTATCCAGGGAATACAACCTGGGATTGTGAGT
TCGACAGCGTTTCCTTCCACACAAGGGTATGGGCGGAAAACAAACAAGAA
GTCCAGGCCAGAATCAATCGCAACCCTGACAAACGCCGCCGTGGCACGCA
GCAGGCAAGTCCGCGGTGCGCGAATCCCTCTCTGCGAGCGACCGCCGCGA
TCGATGATGATGGCCAAGAAGCTGGCCTCGATAATGCGTGCTTCCGGGAC
CTCGCCTGTTCACCCACTTCGATGCGTTCGCCTGCCTGAACATCAATGAT
CGGCATCACTCGTTTGACCGCCAATACTGCGTGAACCTCAAGCTGCAGTC
CCTTGAATTAATCTGGAGGACTGGGGAAACGTTCTACGACCTGACGGGTG
ATTGTCCCATGGCGCGCAGGTGATTTGGACGGGGACTACAGCACAACCTT
TGGAATAGAGAAGACGAAGTTTTCGGTCACGTGCGGCTGTGCTACGGGTA
GCGCTCAAGGAGGCACGTTGTCAGAGTCTCCGACTCCAGCTCCAACTCCT
GGTCCAACCCCTTCGCCGACCGTATCCGGCTGCATGGCCGGAGACCCGTT
TCTGGTCACTCTTCCAGCTGTACCTCAGGTGGAGGGGTGTTATGTGGACT
CCAACTTGAACGATACAGCAGGATACCCCATCTACAGGTCCACTGGCGGC
GCGGAGAGTGCCGACGGACAAAGCTTCGTACTACCAACGGGAGATGGGCC
TGTGGAGGAAACGTACTACGCAAGTATTGGGTAGTAACCTGGATGATTTT
GTTCTAACGAACTGCTGCTGCTTGTTTTTATTCCGCGCTGCTGCTACATG
GGGTGTCCGTCCCCCATTTCTTCTGTCATTTTCCTCGCACCCACGCTCAG
CCCCGTACCTTGTTGAGGGTGTCTTGGCGAGTGGTAACCTTCAACCCAAA
TGGCCCGGTGACAGCACCCAAGAACACTACAGGAAATCGTCTCAAATTAG
TGGTTGAGACAGTTGAAAGGACTTTCAGAGTTGGAAGTGCGGCCAGAGGG
TCCTACGTTTTGTCAAAGCCCGGTGCGTCCTGAAGGTTTTAAGTCGATCT
TTCGAGTGGAGACACTTAACTACGAACAGAGGTAGAGAAAGAACGCCCAA
CGCAGGCCTATTGGCACGCACGGAGGTTCGATCGGCAGCCCGCGGCTCGA
GAGTGGCGCGTCCATACGGGACGCCCGGAATTCAAGCGGCGCATTTCAAG
CTAAGTTGCTCATTCTACGACCTCCTTTCGGGCATTTTTTGTCGCCGCAC
GTCTTCTGTCTTGTGCAGAAGGATTGGACGCTGGTGCTCTTTGAGTTTGG
AACCGAGGAACCTCGAGTGATTTGCAGCCGGGGGATGGACGGTAGCGACG
GCATCAATGGCCATCCCGCGCACGAGGTTGCAAGCGCCTACGACGACACA
CCCGGCGTCATCTTCTGGCATTGTAAGTTAAAGAGAGTTACTAGGTGTGC
TAAAGTTTCGACAGATTTCTTCCTGCGAAACGTTCGTCGCAGTGTGTCGT
GTCTCTTGAGGCAAGGTGTTTCCTAAGCTAACAGTGAACGACCATCAAAC
TCCGAGGCAGTACGTTATGGTTGAAGCCAACGCTTCGAAGCCTTTCAAGC
ATAGACTGATCGTCCGTCAAAGCTTCCGTTTAACTCGCGACTTTGTCGTC
GTAGAGAGAGAAATCTGTCTTTGAGTTGATACTGTTTGGCAACAGACCGG
ATGTACGGCTCCATTCAGTGTCCTTGAACGACAGTATTGCATGTCCACAG
GAGGGCCATCTTTTCAGAGCACTCGCAGCCTGCGAAAGCAATCATGAAAG
CAGTCGCCTTTCAACCTGCCTGCTGTCCTTGTTCAGGCGACCTTGAAGGC
ACTGGCAACGTTTCATACATCAACGCCTCTTCGTCGATATTTAGAATAGA
GTGCGGGTGCGCTTCTTCATTGGACTTCAATCGAGCCATGGGTCGAGAAA
ATGCGAACCAGCGCTCGCTAAGGACGACCCTGGTTCTTTTCTCTTTGAGC
ATGGCGATGGGGGTGGTGCTGGGCGCGCTGTAGGGTCGTCTTGACATCCG
TCGCTATATTTGTCGCCTTCGGGAGCGGGGGCGAAGCCCTTGAAGGCGAT
TGTTTGTAGAGCGGCGCCATCAACGTAACTTACTACAGGTTCCCTTTGTA
TGTTATGTGTCCTACTCGCTTTTGGCAAAACCAAACCGGGGGGTCAAATG
GAGATCGCGGCGAAATAACGATCACTGGCGCTGAGGTTGCGCTCGGGGAG
GGGGAGTGCTTGGAGATGGGGCTGCGGCCTGTTGCAGCAATAGTCCCCTG
AATCACGCGGGTCGGGGACACCCTGGCACAACCTTAAGGTTGATTTCTCG
GGTGAACTCAACTCTCTCTTCCCCGCTTCGCTGGAAAAGTCTCTGAAGCA
AGTCTCG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10041:2..4758- >mRNA_Ecto-sp13_S_contig10041.64.1 ID=mRNA_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1707bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10041:2..4758- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTACACCTTGTATTCGTGTCGCATGTCACGTCGTTTTCCATTGTTTG GTCTTCGCATGTTTGCTTCGCATGCTTTACGCCATCATCATTGCGCAGAC AAGCACACCCCGCTTCTCACCCCGTATCGTTCCAGGTGTACCAAACACCA TCCAACCTTGACTCAGCTCGCCGAGGGATTCTCGACGGAGCTAGAACGCA CATCAAGAACAATTTCGTGAACAGGGGCAGCACCGGGAGGGGGTTAGAAG ATGCTCGTGCTCTCCAGGACGCGTGTCCCAGTGGATCCCCCTTGTTCGTC TCGTCGTCGATGTTTCCTTCCGCTGAGGGGTGCTACGTGGCCTCGGACAC ACTGCTTTCAGGTGGAGAACCGGTATATTTCATCACGTCTGCAACGTCAC CTGGGCAAACCATTCTCGCGGCCCCAAAAGATCCAGACGACGACGACGAG GGACCACTTTTCTGGGGCGTGGCTTATGTGACGAGCAGTACCGCCGTCCT GCAGTGTGCGTCAGTAGAGGATGCGTCATTGGTGAACCCCGCGGATGCTG CATGGATGTGTGACGAAACGGGCACATCGAATTTTCAGACGGTCAGCAAC GACACGCTATTCTCGGTTAGTTGCGGCGGGTGTAGCACGGTTACCCCCGC TCCAACAGCAGCCACGACCGCGGCGCCTACGATCTTCGTCGGCGGCGAAG ACTGCGGGGCACTAACGGTGTCAGCGCCTTCGGCCCCCTACCTCGAAGGC TGCTACTTCGACACAAGGTTGACTCAGAGCTGGTACTCCGAGTTCGTGGA GGTCGAGTTGCCTAGCTTCACCCAAGATGGGTCTCTGGCGGCGGGGCAGC TCTGGATATCATGGTTGAGCTACGCTACGAACGAGACGTTCTGGGGCCTC TTCTTCTACCCCACTTTTACTTCCTCGAGCGAGCAATTGGTATCTGTCTA CTGCCTCTCGCAAGAAGAGGTAACGGAGGCTTATCCAGGGAATACAACCT GGGATTGTGATTTGGACGGGGACTACAGCACAACCTTTGGAATAGAGAAG ACGAAGTTTTCGGTCACGTGCGGCTGTGCTACGGGTAGCGCTCAAGGAGG CACGTTGTCAGAGTCTCCGACTCCAGCTCCAACTCCTGGTCCAACCCCTT CGCCGACCGTATCCGGCTGCATGGCCGGAGACCCGTTTCTGGTCACTCTT CCAGCTGTACCTCAGGTGGAGGGGTGTTATGTGGACTCCAACTTGAACGA TACAGCAGGATACCCCATCTACAGGTCCACTGGCGGCGCGGAGAGTGCCG ACGGACAAAGCTTCGTACTACCAACGGGAGATGGGCCTGTGGAGGAAACG TACTACAAGGATTGGACGCTGGTGCTCTTTGAGTTTGGAACCGAGGAACC TCGAGTGATTTGCAGCCGGGGGATGGACGGTAGCGACGGCATCAATGGCC ATCCCGCGCACGAGGTTGCAAGCGCCTACGACGACACACCCGGCGTCATC TTCTGGCATTGCGACCTTGAAGGCACTGGCAACGTTTCATACATCAACGC CTCTTCGTCGATATTTAGAATAGAGTGCGGGTGCGCTTCTTCATTGGACT TCAATCGAGCCATGGGTCGAGAAAATGCGAACCAGCGCTCGCTAAGGACG ACCCTGGTTCTTTTCTCTTTGAGCATGGCGATGGGGGTGGTGCTGGGCGC GCTGTAG back to top
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