mRNA_Ecto-sp13_S_contig19717.6365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19717.6365.1
Unique NamemRNA_Ecto-sp13_S_contig19717.6365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 603 bits (1556), Expect = 2.610e-188
Identity = 408/490 (83.27%), Postives = 414/490 (84.49%), Query Frame = 2 
Query:  155 ARGPLPHGRMSSPNSSPRFSSSSPGSPHLPALSSPAVAXXXXXXXXXXXXDNNSRIGRQQHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTTMFAPGATAGQGSAAAAL--SRFGPRPTGPVTTNAVPPSSGG-NATRSARAGWLGVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSAGRDPDLDNLQTFATASAVAAGVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXXXXXXNGSQYGRQQGLAFGATGSSGHGVFDGAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAXXXXXXRLGFYXXXXXXXXXXXXXXRS-ADDVFGFMNDGDQK 1612
            ARGPLPHGRMSSPNSSPRF SSSPGSPHLPALSSPA A            DNNSR GRQQHQPYRSRPSGGGD YVGRRGGGEFRNGGHANAP GDG ARTAAPAMRT  FAPGA AGQGSAAAA   SRFGPRPTGPV TNAVPPSSGG NATRS+  GWLGVEAGGVEPFQRPLWASSESSNQQQ+SPALG     PLAR SGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLS A+ APGGSXXXXXXXXXXXXXXXXXXXXX               PPSAGRDPDLDNL+TFATASAVAAGVLDIAAGEGGGPTV LERC+ERTHPAASLDAGT AEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXX    NGSQYGRQQG+AFGA GS   GVFD AIIGAQQ RFAFHQ GRGGLAPARTVGGAGPA   XXXXXX     XXXXXXXXXXXXXX   ADDVFG MNDGDQK
Sbjct: 2209 ARGPLPHGRMSSPNSSPRFPSSSPGSPHLPALSSPAAASASMGVVAGP--DNNSRGGRQQHQPYRSRPSGGGDMYVGRRGGGEFRNGGHANAPAGDGSARTAAPAMRTATFAPGAFAGQGSAAAAATSSRFGPRPTGPVKTNAVPPSSGGGNATRSSGTGWLGVEAGGVEPFQRPLWASSESSNQQQRSPALGPTRAPPLARGSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSRAIDAPGGSXXXXXXXXXXXXXXXXXXXXXPMGSLLGALGAVAAAPPSAGRDPDLDNLETFATASAVAAGVLDIAAGEGGGPTVPLERCNERTHPAASLDAGTAAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXX----NGSQYGRQQGVAFGAAGSPATGVFDEAIIGAQQSRFAFHQRGRGGLAPARTVGGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDVFGSMNDGDQK 2692
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BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 569 bits (1466), Expect = 1.260e-175
Identity = 406/518 (78.38%), Postives = 411/518 (79.34%), Query Frame = 2 
Query:   77 HLQQQHQWVSSSSHHGNWSPGRGGGGAR--GPLPHGRMSSPNSSPRFSSSSPGSPHLPALSSPAVAXXXXXXXXXXXXDNNSRIGRQQHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTTMFAPGATAGQGSAAAALSRFGPRPTGPVTTNAVPPSSGGNATRSARAGWLGVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PPSAGRDPDLDNLQTFATASAVAAGVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXXXXXXNGSQYGRQQGLAFGATGSSGHGVFDGAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAXXXXXXRLGFYXXXXXXXXXXXXXXRSADDVFGFMNDGDQK 1612
            H QQQHQWVSSSSHHGNWSPGR        GPLPHGR+SSPNSSPRFSSSSPGSPHLPALSSPAVA            D NSR GRQQHQPYRSRPSGG DRYVGRRGGGEFRNGGHAN PVGDGGARTAAPAMRTT FAPG TA QG AA A SRFGPRPTGPV TNAVPP SGGNATRSARAGWLGVEAGG+E FQRPLWASSESSNQQQ+SPALG+AA  PLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLS  V APGG XXXXXXXXXXXXXXXXXXXXXXXXXX              PPS GRDPDLDNL+TFATASAVAAGVLDIAAGEGGGPTV LERCDERT PAASLDAGT AEDDAR GRSFSV SMYFGQQH A  XXXXXXXXXXXXXX          LAFGAT SS  G FD AIIGAQQGRF FH                      XXXXXX     XXXXXXXXXXXXXX SADDVFGFMNDGDQK
Sbjct: 2611 HPQQQHQWVSSSSHHGNWSPGRXXXXXXXXGPLPHGRISSPNSSPRFSSSSPGSPHLPALSSPAVAAAASVGGAAAAPDINSRCGRQQHQPYRSRPSGG-DRYVGRRGGGEFRNGGHANDPVGDGGARTAAPAMRTTTFAPGPTARQGPAAVASSRFGPRPTGPVKTNAVPPCSGGNATRSARAGWLGVEAGGMELFQRPLWASSESSNQQQRSPALGTAAAPPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSRDVDAPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXMGSLLGALGAAAAAPPSVGRDPDLDNLETFATASAVAAGVLDIAAGEGGGPTVPLERCDERTDPAASLDAGTAAEDDARTGRSFSVLSMYFGQQHPASPXXXXXXXXXXXXXXXXXXXX----LAFGATRSSATGDFDEAIIGAQQGRFGFHHX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDVFGFMNDGDQK 3119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB05_ECTSI2.610e-18883.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQA3_9PHAE1.260e-17578.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19717contigEcto-sp13_S_contig19717:2..2247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score597.0
Seed ortholog evalue7.5e-168
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
Model size2246
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
Exons1
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
Cds size1434
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.544538-UTR-Ecto-sp13_S_contig19717:1..1821681462995.544538-UTR-Ecto-sp13_S_contig19717:1..182Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19717 2..182 +
1681462995.567676-UTR-Ecto-sp13_S_contig19717:1616..22471681462995.567676-UTR-Ecto-sp13_S_contig19717:1616..2247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19717 1617..2247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.5574577-CDS-Ecto-sp13_S_contig19717:182..16161681462995.5574577-CDS-Ecto-sp13_S_contig19717:182..1616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19717 183..1616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19717.6365.1prot_Ecto-sp13_S_contig19717.6365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19717 183..1616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19717.6365.1

>prot_Ecto-sp13_S_contig19717.6365.1 ID=prot_Ecto-sp13_S_contig19717.6365.1|Name=mRNA_Ecto-sp13_S_contig19717.6365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp
MSSPNSSPRFSSSSPGSPHLPALSSPAVAAAASMGGGAAAPDNNSRIGRQ
QHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTT
MFAPGATAGQGSAAAALSRFGPRPTGPVTTNAVPPSSGGNATRSARAGWL
GVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPT
LTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSSRRSPPGLPP
PPAQQRQQQQQPMGSLLGALGAAAAAPPSAGRDPDLDNLQTFATASAVAA
GVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPS
MYFGQQHAASPPAAAAAAAAAAAAANGSQYGRQQGLAFGATGSSGHGVFD
GAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAAASGGSRLGFYMSA
GSGGGGGGGGGRSADDVFGFMNDGDQK*
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mRNA from alignment at Ecto-sp13_S_contig19717:2..2247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19717.6365.1 ID=mRNA_Ecto-sp13_S_contig19717.6365.1|Name=mRNA_Ecto-sp13_S_contig19717.6365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19717:2..2247+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGGCGGCGGCGGCTACCCGCACTCCCGAGGGCCCGGAGGTGGCGGCG
GCTACGGAGGAGGGAACAGGGGACAGCATCTCCAGCAGCAGCACCAGTGG
GTGTCGTCATCATCGCACCACGGTAACTGGTCTCCCGGTCGCGGCGGTGG
CGGCGCCCGGGGGCCGCTGCCGCACGGGCGGATGTCTTCGCCGAACTCGT
CCCCGCGGTTCTCGTCCTCGTCTCCGGGCTCTCCTCACCTCCCCGCCCTT
TCCTCCCCGGCTGTTGCTGCCGCTGCGTCTATGGGGGGGGGTGCTGCGGC
CCCGGACAACAACAGCCGAATCGGTCGCCAGCAGCACCAGCCGTACCGTA
GCCGCCCGTCAGGAGGAGGAGATAGGTACGTCGGGCGACGTGGTGGAGGA
GAGTTCCGGAACGGCGGGCACGCCAACGCCCCGGTGGGGGACGGCGGCGC
CCGTACCGCCGCCCCCGCCATGAGGACGACGATGTTCGCCCCGGGTGCTA
CTGCCGGGCAAGGGTCGGCGGCGGCGGCGTTGTCGAGGTTCGGGCCTCGC
CCAACAGGACCGGTCACGACAAACGCTGTCCCGCCTTCCTCCGGCGGCAA
CGCTACCCGCTCGGCAAGAGCTGGTTGGTTGGGCGTGGAAGCTGGTGGTG
TGGAGCCGTTTCAGAGGCCCCTGTGGGCGTCCTCCGAGAGCAGCAATCAG
CAGCAGCAGAGTCCCGCGCTGGGATCCGCGGCCCCTGCCCCGCTCGCCCG
CAGCAGCGGTGGCATCGGTGCCTCCCCGACGCTGACCGGCTTGCACGCGT
CCCCTCCGCTGGCGCCGATCGGAAGCAACCGTCACCGACGACAGTCTTCC
GACGGGTCAGGTTCTTCCTTGTCTCACGCCGTCCATGCTCCTGGCGGCAG
CAGCCGACGATCCCCACCGGGGCTTCCGCCCCCTCCCGCGCAGCAGCGGC
AGCAGCAGCAGCAGCCTATGGGCTCTTTGCTCGGCGCGCTAGGAGCGGCG
GCAGCGGCGCCGCCCTCGGCGGGGCGTGATCCAGACCTGGACAACCTCCA
AACTTTCGCGACGGCTTCGGCGGTGGCCGCGGGCGTCTTGGACATCGCAG
CCGGGGAGGGCGGCGGCCCAACGGTCCTGCTGGAGCGGTGCGACGAAAGG
ACTCACCCGGCCGCCTCCCTCGATGCAGGCACTACGGCAGAGGACGACGC
TCGCAATGGACGCTCTTTCTCGGTCCCCAGCATGTACTTTGGGCAGCAGC
ACGCCGCTTCCCCACCTGCTGCTGCTGCTGCTGCTGCAGCTGCAGCTGCA
GCCGCGAATGGCTCGCAGTACGGCCGGCAGCAAGGCCTGGCGTTTGGCGC
TACCGGCTCGTCCGGACACGGTGTCTTTGACGGGGCCATCATCGGCGCAC
AGCAGGGCCGCTTTGCTTTCCACCAGGGGGGGAGGGGAGGCCTAGCTCCT
GCGAGGACCGTTGGTGGCGCTGGCCCCGCCGTCGCCGCGGCCGCCAGCGG
AGGGAGCCGGCTTGGATTCTACATGTCGGCAGGTAGCGGAGGCGGCGGTG
GCGGCGGCGGTGGCAGGAGCGCGGACGATGTTTTTGGCTTCATGAACGAC
GGCGATCAAAAGTAGCCTGGAGGGCCGTCAAGTTAGCAGGAGGGGGCGGG
GAGGGGTGAACAGCAACCGCGTTGGAACGCTTTGCCTTTTCATCTTTTAG
GAAGAGATGTAAACACCGCCACACCCACCACTTTTAGCCTTTGGCGTGCA
TGATGATCTGGTTGTGGTTTTCTGGAGCAGCGTGCTGTTGGTGTCTTTGA
ACAGCGGGAATGAAAGGAGACATTGCTGCGCAGATGGAGGAGTCGGGTCG
TGAGGCGTTTGGGGGTATTCGGCCTTCCTCAGAAGCGCTGCCTAGACATG
TGAAACGTTAGGGTTGAGTTAGATGCTGTGTGTCTTGTTTTTTCACACTT
GGGTTACACATACTTTGTTTCGTACAGAGAACAAGGCGTTAAGGGGCGCG
CGCGGGTGTGTGTGTGTGAAGTGGTGTTGTTTCTACAACATATGTTTTTG
GAAGAAAGTTGCGGTAGACTCAAATCCATACAAGCAGAGTTGGCACCAGG
TACATGAACGGCGAGATCGCACGCTGATCACGGCGTGGGTTTATCTCTCC
TTCCCTGCTGTAGCACCCGGGGGGGGGGGTTCCACTTTGGGCAGCGAATT
CCTTGAAAATGCTCGAGACCACACACAATTTGGAATCCTTGATGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19717:2..2247+

>mRNA_Ecto-sp13_S_contig19717.6365.1 ID=mRNA_Ecto-sp13_S_contig19717.6365.1|Name=mRNA_Ecto-sp13_S_contig19717.6365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19717:2..2247+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTCGCCGAACTCGTCCCCGCGGTTCTCGTCCTCGTCTCCGGGCTC
TCCTCACCTCCCCGCCCTTTCCTCCCCGGCTGTTGCTGCCGCTGCGTCTA
TGGGGGGGGGTGCTGCGGCCCCGGACAACAACAGCCGAATCGGTCGCCAG
CAGCACCAGCCGTACCGTAGCCGCCCGTCAGGAGGAGGAGATAGGTACGT
CGGGCGACGTGGTGGAGGAGAGTTCCGGAACGGCGGGCACGCCAACGCCC
CGGTGGGGGACGGCGGCGCCCGTACCGCCGCCCCCGCCATGAGGACGACG
ATGTTCGCCCCGGGTGCTACTGCCGGGCAAGGGTCGGCGGCGGCGGCGTT
GTCGAGGTTCGGGCCTCGCCCAACAGGACCGGTCACGACAAACGCTGTCC
CGCCTTCCTCCGGCGGCAACGCTACCCGCTCGGCAAGAGCTGGTTGGTTG
GGCGTGGAAGCTGGTGGTGTGGAGCCGTTTCAGAGGCCCCTGTGGGCGTC
CTCCGAGAGCAGCAATCAGCAGCAGCAGAGTCCCGCGCTGGGATCCGCGG
CCCCTGCCCCGCTCGCCCGCAGCAGCGGTGGCATCGGTGCCTCCCCGACG
CTGACCGGCTTGCACGCGTCCCCTCCGCTGGCGCCGATCGGAAGCAACCG
TCACCGACGACAGTCTTCCGACGGGTCAGGTTCTTCCTTGTCTCACGCCG
TCCATGCTCCTGGCGGCAGCAGCCGACGATCCCCACCGGGGCTTCCGCCC
CCTCCCGCGCAGCAGCGGCAGCAGCAGCAGCAGCCTATGGGCTCTTTGCT
CGGCGCGCTAGGAGCGGCGGCAGCGGCGCCGCCCTCGGCGGGGCGTGATC
CAGACCTGGACAACCTCCAAACTTTCGCGACGGCTTCGGCGGTGGCCGCG
GGCGTCTTGGACATCGCAGCCGGGGAGGGCGGCGGCCCAACGGTCCTGCT
GGAGCGGTGCGACGAAAGGACTCACCCGGCCGCCTCCCTCGATGCAGGCA
CTACGGCAGAGGACGACGCTCGCAATGGACGCTCTTTCTCGGTCCCCAGC
ATGTACTTTGGGCAGCAGCACGCCGCTTCCCCACCTGCTGCTGCTGCTGC
TGCTGCAGCTGCAGCTGCAGCCGCGAATGGCTCGCAGTACGGCCGGCAGC
AAGGCCTGGCGTTTGGCGCTACCGGCTCGTCCGGACACGGTGTCTTTGAC
GGGGCCATCATCGGCGCACAGCAGGGCCGCTTTGCTTTCCACCAGGGGGG
GAGGGGAGGCCTAGCTCCTGCGAGGACCGTTGGTGGCGCTGGCCCCGCCG
TCGCCGCGGCCGCCAGCGGAGGGAGCCGGCTTGGATTCTACATGTCGGCA
GGTAGCGGAGGCGGCGGTGGCGGCGGCGGTGGCAGGAGCGCGGACGATGT
TTTTGGCTTCATGAACGACGGCGATCAAAAGTAG
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