prot_Ecto-sp13_S_contig19717.6365.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19717.6365.1
Unique Nameprot_Ecto-sp13_S_contig19717.6365.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length478
Homology
BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 1.780e-185
Identity = 399/481 (82.95%), Postives = 405/481 (84.20%), Query Frame = 0
Query:    1 MSSPNSSPRFSSSSPGSPHLPALSSPAVAXXXXXXXXXXXXDNNSRIGRQQHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTTMFAPGATAGQGSAAAAL--SRFGPRPTGPVTTNAVPPSSGG-NATRSARAGWLGVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSAGRDPDLDNLQTFATASAVAAGVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXXXXXXNGSQYGRQQGLAFGATGSSGHGVFDGAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAXXXXXXRLGFYXXXXXXXXXXXXXXRS-ADDVFGFMNDGDQK 477
            MSSPNSSPRF SSSPGSPHLPALSSPA A            DNNSR GRQQHQPYRSRPSGGGD YVGRRGGGEFRNGGHANAP GDG ARTAAPAMRT  FAPGA AGQGSAAAA   SRFGPRPTGPV TNAVPPSSGG NATRS+  GWLGVEAGGVEPFQRPLWASSESSNQQQ+SPALG     PLAR SGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLS A+ APGGSXXXXXXXXXXXXXXXXXXXXX               PPSAGRDPDLDNL+TFATASAVAAGVLDIAAGEGGGPTV LERC+ERTHPAASLDAGT AEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXX    NGSQYGRQQG+AFGA GS   GVFD AIIGAQQ RFAFHQ GRGGLAPARTVGGAGPA   XXXXXX     XXXXXXXXXXXXXX   ADDVFG MNDGDQK
Sbjct: 2218 MSSPNSSPRFPSSSPGSPHLPALSSPAAASASMGVVAGP--DNNSRGGRQQHQPYRSRPSGGGDMYVGRRGGGEFRNGGHANAPAGDGSARTAAPAMRTATFAPGAFAGQGSAAAAATSSRFGPRPTGPVKTNAVPPSSGGGNATRSSGTGWLGVEAGGVEPFQRPLWASSESSNQQQRSPALGPTRAPPLARGSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSRAIDAPGGSXXXXXXXXXXXXXXXXXXXXXPMGSLLGALGAVAAAPPSAGRDPDLDNLETFATASAVAAGVLDIAAGEGGGPTVPLERCNERTHPAASLDAGTAAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXX----NGSQYGRQQGVAFGAAGSPATGVFDEAIIGAQQSRFAFHQRGRGGLAPARTVGGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDVFGSMNDGDQK 2692          
BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 515 bits (1327), Expect = 4.060e-161
Identity = 378/481 (78.59%), Postives = 383/481 (79.63%), Query Frame = 0
Query:    1 MSSPNSSPRFSSSSPGSPHLPALSSPAVAXXXXXXXXXXXXDNNSRIGRQQHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTTMFAPGATAGQGSAAAALSRFGPRPTGPVTTNAVPPSSGGNATRSARAGWLGVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PPSAGRDPDLDNLQTFATASAVAAGVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPSMYFGQQHAAXXXXXXXXXXXXXXXXNGSQYGRQQGLAFGATGSSGHGVFDGAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAXXXXXXRLGFYXXXXXXXXXXXXXXRSADDVFGFMNDGDQK 477
            +SSPNSSPRFSSSSPGSPHLPALSSPAVA            D NSR GRQQHQPYRSRPSGG DRYVGRRGGGEFRNGGHAN PVGDGGARTAAPAMRTT FAPG TA QG AA A SRFGPRPTGPV TNAVPP SGGNATRSARAGWLGVEAGG+E FQRPLWASSESSNQQQ+SPALG+AA  PLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLS  V APGG XXXXXXXXXXXXXXXXXXXXXXXXXX              PPS GRDPDLDNL+TFATASAVAAGVLDIAAGEGGGPTV LERCDERT PAASLDAGT AEDDAR GRSFSV SMYFGQQH A  XXXXXXXXXXXXXX          LAFGAT SS  G FD AIIGAQQGRF FH                      XXXXXX     XXXXXXXXXXXXXX SADDVFGFMNDGDQK
Sbjct: 2648 ISSPNSSPRFSSSSPGSPHLPALSSPAVAAAASVGGAAAAPDINSRCGRQQHQPYRSRPSGG-DRYVGRRGGGEFRNGGHANDPVGDGGARTAAPAMRTTTFAPGPTARQGPAAVASSRFGPRPTGPVKTNAVPPCSGGNATRSARAGWLGVEAGGMELFQRPLWASSESSNQQQRSPALGTAAAPPLARSSGGIGASPTLTGLHASPPLAPIGSNRHRRQSSDGSGSSLSRDVDAPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXMGSLLGALGAAAAAPPSVGRDPDLDNLETFATASAVAAGVLDIAAGEGGGPTVPLERCDERTDPAASLDAGTAAEDDARTGRSFSVLSMYFGQQHPASPXXXXXXXXXXXXXXXXXXXX----LAFGATRSSATGDFDEAIIGAQQGRFGFHHX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDVFGFMNDGDQK 3119          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19717.6365.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB05_ECTSI1.780e-18582.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQA3_9PHAE4.060e-16178.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..477
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19717contigEcto-sp13_S_contig19717:183..1616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19717.6365.1mRNA_Ecto-sp13_S_contig19717.6365.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19717 2..2247 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19717.6365.1 ID=prot_Ecto-sp13_S_contig19717.6365.1|Name=mRNA_Ecto-sp13_S_contig19717.6365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp
MSSPNSSPRFSSSSPGSPHLPALSSPAVAAAASMGGGAAAPDNNSRIGRQ
QHQPYRSRPSGGGDRYVGRRGGGEFRNGGHANAPVGDGGARTAAPAMRTT
MFAPGATAGQGSAAAALSRFGPRPTGPVTTNAVPPSSGGNATRSARAGWL
GVEAGGVEPFQRPLWASSESSNQQQQSPALGSAAPAPLARSSGGIGASPT
LTGLHASPPLAPIGSNRHRRQSSDGSGSSLSHAVHAPGGSSRRSPPGLPP
PPAQQRQQQQQPMGSLLGALGAAAAAPPSAGRDPDLDNLQTFATASAVAA
GVLDIAAGEGGGPTVLLERCDERTHPAASLDAGTTAEDDARNGRSFSVPS
MYFGQQHAASPPAAAAAAAAAAAAANGSQYGRQQGLAFGATGSSGHGVFD
GAIIGAQQGRFAFHQGGRGGLAPARTVGGAGPAVAAAASGGSRLGFYMSA
GSGGGGGGGGGRSADDVFGFMNDGDQK*
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