mRNA_Ecto-sp13_S_contig19710.6362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19710.6362.1
Unique NamemRNA_Ecto-sp13_S_contig19710.6362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.710e-50
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    4 HHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            HHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK
Sbjct: 1234 HHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 1322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A7S0C203_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C203_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.250e-49
Identity = 82/90 (91.11%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 RHHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            R +E LRR+RL++FM GFGQITL+LKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK
Sbjct:   77 REYEELRRKRLEKFMDGFGQITLKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: I2CR95_NANGC (Structural maintenance of chromosome 4 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR95_NANGC)

HSP 1 Score: 163 bits (413), Expect = 4.300e-49
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    7 HENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            H+ LRRQRL+EFMAGF  ITL+LKEMYQM+TLGGDAELEL+DSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+K
Sbjct:   35 HDELRRQRLEEFMAGFADITLKLKEMYQMLTLGGDAELELLDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYK 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A7S1ZB93_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB93_TRICV)

HSP 1 Score: 162 bits (411), Expect = 6.130e-48
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    7 HENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            HE LRR RL+ FM GFG+ITL+LKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+K
Sbjct:  122 HEELRRMRLEMFMEGFGRITLKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYK 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A7S3PBM4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBM4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.010e-47
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 RHHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            R +E+LRR+RL+ FM GFGQITL+LKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI+NLSGGEKTLSSLALVFALHH+K
Sbjct:  112 RTYEDLRRKRLEMFMEGFGQITLKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYK 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A6D2KI31_9BRAS (SMC_N domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KI31_9BRAS)

HSP 1 Score: 162 bits (411), Expect = 4.110e-47
Identity = 78/90 (86.67%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 RHHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            +H++ LR++RLDEFMAGF  I+L+LKEMYQMITLGGDAELELVDSLDPFSEG+VFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+K
Sbjct:  199 KHYDELRKRRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYK 288
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A7R9YD84_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD84_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.170e-47
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:   10 ENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            E+LRRQRL+EFM GFG ITL+LKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPP+KSWKNI+NLSGGEKTLSSLALVFALHH++
Sbjct:   74 EDLRRQRLEEFMHGFGIITLKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPRKSWKNISNLSGGEKTLSSLALVFALHHYR 160
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: UPI00077A7825 (structural maintenance of chromosomes protein 4-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7825)

HSP 1 Score: 156 bits (394), Expect = 5.400e-47
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:   16 LRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            +R+QRLDEFM GF  IT +LKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI+NLSGGEKTLSSLALVFALHH+K
Sbjct:    1 MRKQRLDEFMTGFSLITTKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYK 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A7S0X103_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X103_9CHLO)

HSP 1 Score: 157 bits (397), Expect = 7.600e-47
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 RHHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            R +E LR+ RLD FMAGF  I+LRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI+NLSGGEKTLSSL+LVFALHH+K
Sbjct:   81 RSYEGLRKARLDGFMAGFNTISLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNISNLSGGEKTLSSLSLVFALHHYK 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Match: A0A803NAJ8_CHEQI (SMC_N domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NAJ8_CHEQI)

HSP 1 Score: 157 bits (396), Expect = 8.760e-47
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    7 HENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFK 270
            ++  R++RLDEFMAGF  I+L+LKEMYQMITLGGDAELELVDSLDPFSEG+VFSVRPPKKSWKNIANLSGGEKTLSSLAL+FALHH+K
Sbjct:   16 YDEWRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALIFALHHYK 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19710.6362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI1.710e-50100.00Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S0C203_9STRA2.250e-4991.11Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
I2CR95_NANGC4.300e-4989.77Structural maintenance of chromosome 4 n=1 Tax=Nan... [more]
A0A7S1ZB93_TRICV6.130e-4890.91Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S3PBM4_9STRA3.010e-4788.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6D2KI31_9BRAS4.110e-4786.67SMC_N domain-containing protein n=1 Tax=Microthlas... [more]
A0A7R9YD84_9STRA5.170e-4789.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
UPI00077A78255.400e-4789.41structural maintenance of chromosomes protein 4-li... [more]
A0A7S0X103_9CHLO7.600e-4786.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A803NAJ8_CHEQI8.760e-4785.23SMC_N domain-containing protein n=1 Tax=Chenopodiu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19710contigEcto-sp13_S_contig19710:1984..2738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score181.0
Seed ortholog evalue2.5e-43
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
Model size276
KEGG koko:K06675
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
Exons2
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
Cds size276
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.3855274-CDS-Ecto-sp13_S_contig19710:1983..20731681462995.3855274-CDS-Ecto-sp13_S_contig19710:1983..2073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19710 1984..2073 +
1681462995.3979838-CDS-Ecto-sp13_S_contig19710:2552..27381681462995.3979838-CDS-Ecto-sp13_S_contig19710:2552..2738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19710 2553..2738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19710.6362.1prot_Ecto-sp13_S_contig19710.6362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19710 1984..2738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19710.6362.1

>prot_Ecto-sp13_S_contig19710.6362.1 ID=prot_Ecto-sp13_S_contig19710.6362.1|Name=mRNA_Ecto-sp13_S_contig19710.6362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
RHHENLRRQRLDEFMAGFGQITLRLKEMYQMITLGGDAELELVDSLDPFS
EGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKV*
back to top

mRNA from alignment at Ecto-sp13_S_contig19710:1984..2738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19710.6362.1 ID=mRNA_Ecto-sp13_S_contig19710.6362.1|Name=mRNA_Ecto-sp13_S_contig19710.6362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19710:1984..2738+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCATCACGAGAACCTCCGGCGGCAACGACTGGACGAATTCATGGCCGG
CTTCGGACAGATCACGCTCCGCCTCAAGGAGATGTATCAGGTGGGTAGAG
AATGATTTTTTTTTGTGTATGGACTGCCGTGAAAATCGCTTGGAGGTTGC
GGTGCACTTAGCACGTTTCGGACGCCGACTCTGGTAGTGCCGAGGCTAAC
TGGTCGTCTACGTTTGGCAGTTTGAACGATACCCTTCTGTTTTGAAGCGA
ATATACCAATGGTCCCTACATTTCCAAACGGAGTGGTATCTGGTGATCAC
CTGCGTGAGGCAAGCAGTTGCGACAAGCGGCCGTCCCCAGATGTAGATAT
GGATGGACCAAGAAACTTACGAGTAACTGCCAAGTTGAGGCCTTATTACA
AAAGTGCCGAGCTGAAAGGGGACCTCCCGACATGGTATTAAAACCCTTCA
CACCCTGTTCACCTACAAGTGAACAAATACATCCGGTATTTGCGCGCTGC
CGCAACTACCCGTTGATCCCTCGGAAACAAACATTGCAGCCCTTCTCTCT
CATGATCCGGACACCGCAGATGATCACCCTGGGCGGCGACGCTGAGCTGG
AGCTGGTGGATTCTCTGGACCCCTTCAGCGAGGGCATCGTGTTCAGCGTG
CGTCCCCCCAAGAAGTCGTGGAAGAACATCGCCAACCTCTCTGGGGGCGA
GAAGACGCTGTCCTCCCTCGCGCTTGTGTTCGCTCTGCACCACTTCAAGG
TATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19710:1984..2738+

>mRNA_Ecto-sp13_S_contig19710.6362.1 ID=mRNA_Ecto-sp13_S_contig19710.6362.1|Name=mRNA_Ecto-sp13_S_contig19710.6362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19710:1984..2738+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCATCACGAGAACCTCCGGCGGCAACGACTGGACGAATTCATGGCCGG
CTTCGGACAGATCACGCTCCGCCTCAAGGAGATGTATCAGATGATCACCC
TGGGCGGCGACGCTGAGCTGGAGCTGGTGGATTCTCTGGACCCCTTCAGC
GAGGGCATCGTGTTCAGCGTGCGTCCCCCCAAGAAGTCGTGGAAGAACAT
CGCCAACCTCTCTGGGGGCGAGAAGACGCTGTCCTCCCTCGCGCTTGTGT
TCGCTCTGCACCACTTCAAGGTATGA
back to top