mRNA_Ecto-sp13_S_contig19698.6352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19698.6352.1
Unique NamemRNA_Ecto-sp13_S_contig19698.6352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Match: A0A6H5JW52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW52_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-23
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLHGN 156
            MVLNEQAKVLLMVV  LLPWS+RAFVLHCSANQRSVLGRHEGVVM EMLHGN
Sbjct:    1 MVLNEQAKVLLMVVNLLLPWSTRAFVLHCSANQRSVLGRHEGVVMMEMLHGN 52
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BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.240e-20
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLHGN 156
            MV NEQAKVLLMV   LLPWS+RAFVLHC+ANQRSVLGRHEGVVM E LHGN
Sbjct:    1 MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW52_9PHAE1.740e-2392.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4V1_ECTSI2.240e-2084.62Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19698contigEcto-sp13_S_contig19698:1063..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score90.5
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D7G4V1
Model size156
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_002580.1
Cds size156
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462994.5878391-CDS-Ecto-sp13_S_contig19698:1062..12181681462994.5878391-CDS-Ecto-sp13_S_contig19698:1062..1218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19698 1063..1218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19698.6352.1prot_Ecto-sp13_S_contig19698.6352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19698 1063..1218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19698.6352.1

>prot_Ecto-sp13_S_contig19698.6352.1 ID=prot_Ecto-sp13_S_contig19698.6352.1|Name=mRNA_Ecto-sp13_S_contig19698.6352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLH
GN
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mRNA from alignment at Ecto-sp13_S_contig19698:1063..1218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19698.6352.1 ID=mRNA_Ecto-sp13_S_contig19698.6352.1|Name=mRNA_Ecto-sp13_S_contig19698.6352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19698:1063..1218- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTCAACGAGCAGGCCAAGGTTCTGCTGATGGTGGTGACCTTCCT
GCTTCCGTGGAGTTCCAGAGCTTTCGTGCTCCACTGCAGTGCCAACCAGC
GATCCGTGCTCGGCAGGCACGAAGGCGTTGTCATGAAGGAGATGCTTCAC
GGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19698:1063..1218-

>mRNA_Ecto-sp13_S_contig19698.6352.1 ID=mRNA_Ecto-sp13_S_contig19698.6352.1|Name=mRNA_Ecto-sp13_S_contig19698.6352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19698:1063..1218- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTCAACGAGCAGGCCAAGGTTCTGCTGATGGTGGTGACCTTCCT
GCTTCCGTGGAGTTCCAGAGCTTTCGTGCTCCACTGCAGTGCCAACCAGC
GATCCGTGCTCGGCAGGCACGAAGGCGTTGTCATGAAGGAGATGCTTCAC
GGGAAC
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