prot_Ecto-sp13_S_contig19698.6352.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19698.6352.1
Unique Nameprot_Ecto-sp13_S_contig19698.6352.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length52
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Match: A0A6H5JW52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW52_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-23
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 
Query:    1 MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLHGN 52
            MVLNEQAKVLLMVV  LLPWS+RAFVLHCSANQRSVLGRHEGVVM EMLHGN
Sbjct:    1 MVLNEQAKVLLMVVNLLLPWSTRAFVLHCSANQRSVLGRHEGVVMMEMLHGN 52
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BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.240e-20
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    1 MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLHGN 52
            MV NEQAKVLLMV   LLPWS+RAFVLHC+ANQRSVLGRHEGVVM E LHGN
Sbjct:    1 MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19698.6352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW52_9PHAE1.740e-2392.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4V1_ECTSI2.240e-2084.62Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.674

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19698contigEcto-sp13_S_contig19698:1063..1218 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19698.6352.1mRNA_Ecto-sp13_S_contig19698.6352.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19698 1063..1218 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19698.6352.1 ID=prot_Ecto-sp13_S_contig19698.6352.1|Name=mRNA_Ecto-sp13_S_contig19698.6352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MVLNEQAKVLLMVVTFLLPWSSRAFVLHCSANQRSVLGRHEGVVMKEMLH
GN
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