mRNA_Ecto-sp13_S_contig19554.6299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19554.6299.1
Unique NamemRNA_Ecto-sp13_S_contig19554.6299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19554.6299.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 9.660e-85
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:  394 YVDCASHSVRETTAMAHPSIPASQLYEMARSIEANITIRTADWTKSKSLPTPLDAASFNNSPPSPPLFKRKSYKGLMFLLLIVALIFFVIDPTAAVFMILAVLAALFGAYSGSKTQQKRVRNAGWWMLNVASKRTLGSNGAGAGVYALSFFLGLQGT-GESSQTTSSYPY 900
            YVDCAS+SV+ETTAMAHPSIPASQLYEMARSIEANITIRTADW K KSLPT L+A SFNNSPPSPPLFKRKSYKGLMFLLLIV+LIFF ++PTAAVFM L+VLAALFGAYSGSKTQQKRVRNAG W+LN ASKRTLGSNGAGAGVYALSFFLGLQ T G SSQ+ SSYPY
Sbjct:  302 YVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQQKRVRNAGSWILNAASKRTLGSNGAGAGVYALSFFLGLQNTDGSSSQSASSYPY 471
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BLAST of mRNA_Ecto-sp13_S_contig19554.6299.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.280e-57
Identity = 111/167 (66.47%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:  394 YVDCASHSVRETTAMAHPSIPASQLYEMARSIEANITIRTADWTKSKSLPTPLDAASFNNSPPSPPLFKRKSYKGLMFLLLIVALIFFVIDPTAAVFMILAVLAALFGAYSGSKTQQKRVRNAGWWMLNVASKRTLGSNGAGAGVYALSFFLGLQGTGESSQTTSSY 894
            YVDCASHSV ET AMAHPS+PASQLYEMARSIEANIT+R  DWTKSKSLPT LDA+ F+NS P                          +D TAAVFM+ AVL AL+GAYSGS+TQ++R+RNAGWW+ NV SK+TLGSNGAGAGVYA+S  LGLQGTGESSQT S Y
Sbjct:  212 YVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAYSGSRTQRRRIRNAGWWIFNV-SKKTLGSNGAGAGVYAISVILGLQGTGESSQTASYY 377
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BLAST of mRNA_Ecto-sp13_S_contig19554.6299.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 4.760e-42
Identity = 94/166 (56.63%), Postives = 119/166 (71.69%), Query Frame = 1 
Query:  394 YVDCASHSVRETTAMAHPSIPASQLYEMARSIEANITIRTADWTKSKSLPTPLDAASFNNSPPSPPLFKRKSYKGLMFLLLIVALIFFVIDPTAAVFMILAVLAALFGAYSGSKTQQKRVR-NAGWWMLNVASKRTLGSNGAGAGVYALSFFLGLQ--GTGESSQT 882
            Y+DCAS+SV+ETT MA  S PAS+LYEMAR+I+ NITI+  +W   KSLP PL A  F N  P   L K+K YK L+F+LL+V+LIFF I+PTAAVFM++AV AA+FGAYSGSK+   R R +AG+ M    SK T+ +N  G  VY LSFFLG+   G+G+ S T
Sbjct:  160 YLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRARKSAGFGMFGSGSKTTVSTNAFGLAVYLLSFFLGIGSIGSGDPSGT 325
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19554.6299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH32_ECTSI9.660e-8587.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA59_9PHAE2.280e-5766.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWP8_ECTSI4.760e-4256.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19554contigEcto-sp13_S_contig19554:2..2161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1887
Hectar predicted targeting categorysignal anchor
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.6567087-UTR-Ecto-sp13_S_contig19554:1..9851681462990.6567087-UTR-Ecto-sp13_S_contig19554:1..985Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19554 2..985 -
1681462990.6933215-UTR-Ecto-sp13_S_contig19554:1726..21611681462990.6933215-UTR-Ecto-sp13_S_contig19554:1726..2161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19554 1727..2161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.6678867-CDS-Ecto-sp13_S_contig19554:985..13431681462990.6678867-CDS-Ecto-sp13_S_contig19554:985..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19554 986..1343 -
1681462990.68208-CDS-Ecto-sp13_S_contig19554:1616..17261681462990.68208-CDS-Ecto-sp13_S_contig19554:1616..1726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19554 1617..1726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19554.6299.1prot_Ecto-sp13_S_contig19554.6299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19554 986..1726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19554.6299.1

>prot_Ecto-sp13_S_contig19554.6299.1 ID=prot_Ecto-sp13_S_contig19554.6299.1|Name=mRNA_Ecto-sp13_S_contig19554.6299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MAHPSIPASQLYEMARSIEANITIRTADWTKSKSLPTPLDAASFNNSPPS
PPLFKRKSYKGLMFLLLIVALIFFVIDPTAAVFMILAVLAALFGAYSGSK
TQQKRVRNAGWWMLNVASKRTLGSNGAGAGVYALSFFLGLQGTGESSQTT
SSYPY*
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mRNA from alignment at Ecto-sp13_S_contig19554:2..2161-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19554.6299.1 ID=mRNA_Ecto-sp13_S_contig19554.6299.1|Name=mRNA_Ecto-sp13_S_contig19554.6299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19554:2..2161- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATGGTGTGGACTCCGTGGTTCCCGCGGAAAAGCGAGGTATTGGTGGGA
CTGTTCGCGTTGGGGGGGGTCGTCAGGCGCTTGACTTAGTAATTGCGATG
ACAGACTTGGGTCAAAGAAGGAGCACGTCGTGTTTCCAATTTCCAACACT
CTCCGCTTGAAATACTAAGCTGAACAGAAAATGCACACGGAAATCCGGCA
CCCCTTCGTCTCTTTCCAGGAACGATCCACGCTCTGGCGGAACAAAAGTC
TCCCTTCGGCTGTCTAAGTTTTGTCAACCACGTCATCAAAAACCACCCCG
CGATCCTCTGTTACCTCCCGTCCCCGCTCGTCGACAACGCCACGCGCACC
CGTGCGACGATTACCCTCGTCGCTCCAAAATCGCGGGAATAGCTACGTGG
ACTGCGCCTCCCATTCCGTGAGGGAGACCACGGCCATGGCTCATCCGTCG
ATCCCCGCCTCTCAGCTGTACGAGATGGCCCGCTCTATCGAGGCCAACAT
CACCATCAGGACGGCCGACTGGACGAAGTCCAAGAGCCTCCCCACGTGAG
ACAAACCATGGCATACGTACGCAACTCTCGGGAAGGGGGGGTTGCCATAG
CGACGCTGACATCATGATGCACGTGCATGGATCTAATCATCCAATTTTTC
TCACGACTTCAACAACTATGCATACTCTAAGTATCTGCGTGATCGAGTTC
ACCACGGGAGAGTGTAACCCTTTCTCCCCCGCGTAACATTAATTACCATC
GTAACCCCTTTACGCATGCCCCCAATACACTCCCCACATCGCCGTACTCC
GCCCGCCCCTAACTCCAGCCCTCTGGATGCCGCGAGCTTCAACAACTCCC
CTCCGTCGCCGCCGCTGTTCAAGCGGAAGTCGTACAAGGGCCTCATGTTC
TTGCTCCTCATCGTGGCGCTCATCTTCTTCGTGATCGACCCAACGGCGGC
GGTCTTCATGATCCTCGCGGTCCTCGCCGCCCTGTTCGGGGCCTACTCCG
GCAGCAAGACGCAGCAGAAGCGGGTCCGCAACGCCGGGTGGTGGATGCTC
AACGTCGCCTCCAAGAGGACGTTAGGCTCGAACGGCGCGGGGGCCGGGGT
GTACGCGCTCTCCTTCTTCCTGGGACTCCAGGGCACCGGCGAGAGCAGTC
AGACGACCTCGTCGTACCCCTACTGAAGGAGGTGTTTCTAAGATCGCATC
CTGCTTGTCGGGGGTCGCGGCCGTTCTTCTTGCGGCACGATCGTTTTCAT
TGGATCCGTCCACACCCAGCGACTGGTGGTCTCTCGCCTGTTTGCTCGCC
TCGGATTTTCCGCCCCGGCACATGTAAAAGGATAGGGGAAGATGAGCGAG
CGAGCACCATGCCACGTCCATTGCACTACTGCTGTACCATATGCGCTGTA
GCGTACGCCAGCCCTATAGTACCATTGTTTACCTTCAATTTTGTGTCTTA
ACTGTTTCGGAGAACACAACAAATCCGTCTCCAGTTAGGTGTGTCGCTGC
ATCGACGTTGGGGCGCCAGCTGTTGTACAGTAGTCTTGTAAACTGACTTG
CTTTGGGATGGATTTTTTTTTTAATCAAGGAAGATTTCCCATTCGAGATA
TTCCTCCACTGGGCCAATAGATGTGTTGCAGCCAGTGTTTACAGTAGAGA
AAGGGGAAAACTAAGCGCGACGTCTGCCGACTGCTTGTGACGCCCGCCTG
AGGGGGTATCACCGCTGCTGCTGCTGCTGTCGCATACCTCGGAATGCTAA
CAGGAGACCTGTCTGTGCAGCCGCCGCGATGATGCAAACGTAACCGTGTC
GTGGAAACGTAAAGCAGGCCGTTTCGTTCAGTGAGCTGGGTGCGTGTTCG
TTCGTCGAAAATAAGATAAATGTGGTGCTACTGATTTTTTTATGTATCTG
TCAGACTGTCTTCAAGCTGTAGGGTACTTTTTATTTTTTAGTGCGTTCGT
CTAATCTCGTCCAATCTGGGCGTTTCAATGTATCTAGTCATATCTTGACG
ACATGAATGTTTTGGACGCGTCTGGTGGAGTCGCGCAGGAGGAAGTTCAC
ATGATACAACTAGTGTATTGGATAGATGTATACTTCATTTTATGTTTGGC
GTTCATGTATGTAGACTTGGTCAGTACACATTCATTTCTTTTTTGTAGTT
TAGGTAACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19554:2..2161-

>mRNA_Ecto-sp13_S_contig19554.6299.1 ID=mRNA_Ecto-sp13_S_contig19554.6299.1|Name=mRNA_Ecto-sp13_S_contig19554.6299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19554:2..2161- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCATCCGTCGATCCCCGCCTCTCAGCTGTACGAGATGGCCCGCTC
TATCGAGGCCAACATCACCATCAGGACGGCCGACTGGACGAAGTCCAAGA
GCCTCCCCACCCCTCTGGATGCCGCGAGCTTCAACAACTCCCCTCCGTCG
CCGCCGCTGTTCAAGCGGAAGTCGTACAAGGGCCTCATGTTCTTGCTCCT
CATCGTGGCGCTCATCTTCTTCGTGATCGACCCAACGGCGGCGGTCTTCA
TGATCCTCGCGGTCCTCGCCGCCCTGTTCGGGGCCTACTCCGGCAGCAAG
ACGCAGCAGAAGCGGGTCCGCAACGCCGGGTGGTGGATGCTCAACGTCGC
CTCCAAGAGGACGTTAGGCTCGAACGGCGCGGGGGCCGGGGTGTACGCGC
TCTCCTTCTTCCTGGGACTCCAGGGCACCGGCGAGAGCAGTCAGACGACC
TCGTCGTACCCCTACTGA
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