mRNA_Ecto-sp13_S_contig19533.6290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE) HSP 1 Score: 391 bits (1005), Expect = 5.000e-125 Identity = 204/216 (94.44%), Postives = 204/216 (94.44%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQ----------TVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELP NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQ TVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK
Sbjct: 292 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPQENAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQGATAGGGGSKTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 507
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA) HSP 1 Score: 231 bits (588), Expect = 2.220e-69 Identity = 118/208 (56.73%), Postives = 151/208 (72.60%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAA--GNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
D SL++SC KDNRTLLWDLF L+ VYELP ++ +MFGG +AQRRY V+WSP+IPAVVS CSFDRKVQ++SM+GA S+GRAPKW RP GA+F FGG+L+SF +G D ++ G G + K++ V E+ VAAS +FE+AM ++ F+G+C+ K A A T +E +VWQFMQVIFEKNAR LL HLGFD E +AK
Sbjct: 282 DPSLVLSCGKDNRTLLWDLFRLEAVYELPSMSKSKAAGGTGEMFGGIASSAQRRYHVAWSPNIPAVVSCCSFDRKVQVYSMSGAKASSGRAPKWLSRPVGATFGFGGKLLSFGQSGADQSSTPGAPRTGPKHFKVTQVVENPDLVAASTKFEQAMLSKNFKGYCEAKVAEAKTPYEAKVWQFMQVIFEKNARAILLCHLGFDAEAIAK 489
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S1C338_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C338_9STRA) HSP 1 Score: 189 bits (481), Expect = 5.900e-57 Identity = 96/205 (46.83%), Postives = 135/205 (65.85%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQ-MFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
DA +L++C KDNRTLLWDL+ ++ +Y++P P +A+ M+GG G + Q+RY V WSP + V STCSFDRKVQ S+NGA T +GR PKW +RP+G +F FGG+ VSF+A DA +++ V ED AAS F+ A+ + RG C K A+AATAHE +VW F++++FE++AR +LL HLGFD + +
Sbjct: 4 DAGMLLTCGKDNRTLLWDLYKMESIYDIPNEDAGREPAEDARGMYGGLGSSQQKRYDVQWSPLLRGVASTCSFDRKVQCHSLNGAFTLSGRPPKWTQRPSGVAFGFGGQCVSFAA---DA---------PVLQVRKVVEDEPLAAASAEFDRALDSGDLRGLCASKSAAAATAHEAQVWSFLRILFEEDARAELLTHLGFDAKEI 196
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S2R415_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R415_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.610e-56 Identity = 108/210 (51.43%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQ---QTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATA---HERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D SLL+SC KDNRT LWDL +PVYEL A P + FGG+G RRY+VSWSP +PAV+STCSFDRKV ++SM+G + +APKW RRP GASF FGG+LV+FS+ G GQ Q VK+SSV ED++ V SR FE+ M + FRG C +K A+A A HE++VW+F+++IFE +AR +LL LGF+ E +
Sbjct: 282 DTSLLLSCGKDNRTFLWDLCDCRPVYELQAAPTATAP---SGGFGGFGSAFGRRYEVSWSPKLPAVLSTCSFDRKVHVYSMSGTKSQATQAPKWLRRPVGASFGFGGKLVTFSSPPGKP-------GQRVPQVVKVSSVVEDSSIVQVSRAFEQRMGQKDFRGICNDKAAAAEAAGDEHEKQVWEFIKLIFEDDARAKLLDKLGFNAEEI 481
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A2P4XIT7_9STRA (Protein transporter Sec31A (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIT7_9STRA) HSP 1 Score: 177 bits (448), Expect = 3.890e-49 Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D L++SC KDNRTLLWDLFS K V E P P+ + Q FGG G QRR+ V WSP +PAV STC+ D KVQ++ ++G R PKW RRP GASF FGG+LV+ A + AA N ++ + + V D V + + ++ T+ F+G C++K ASAATA ER VW FM+++FEK+AR LL HLG D E +
Sbjct: 286 DPGLILSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPPMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPACRPPKWMRRPVGASFGFGGKLVTI-ANPQEPAAPNGDH-RRLIHMQRVISDTGLVVEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: M4B6P5_HYAAE (Sec16_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6P5_HYAAE) HSP 1 Score: 178 bits (451), Expect = 2.270e-48 Identity = 98/204 (48.04%), Postives = 127/204 (62.25%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D LL+SC KDNRTLLWDLFS K V ELP + + Q FGG QRR+ V WSP IPAV STCS D KVQ++S+ G + R PKW RRPAGASF FGG+LV+ + A + ++ V + V D VA + + ++ T+ FRG+C++K A+AAT ER VW FM+++FEK+AR LL HLG D E +
Sbjct: 287 DPGLLLSCGKDNRTLLWDLFSRKTVAELPSDAPDAPAMGSDQFFGGV-LAGQRRWNVQWSPQIPAVASTCSLDGKVQIWSLAGGGNPDCRPPKWMRRPAGASFGFGGKLVTIANP--QEATSHNGDHRRLVHMQRVIGDTRLVAEAEALDRSLDTKDFRGYCEQKIATAATGEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 487
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: H3GVL6_PHYRM (Sec16_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GVL6_PHYRM) HSP 1 Score: 178 bits (451), Expect = 5.100e-48 Identity = 98/204 (48.04%), Postives = 128/204 (62.75%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D LL+SC KDNRTLLWDLFS K V E P + + Q FGG G QRR+ V WSP +PAV STCS D K+Q++ ++G R PKW RRPAGASF FGG+LV+ A + AA N ++ + + V D VA + + ++ T+ F+G C++K ASAATA ER VW FM+++FEK+AR LL HLG D E +
Sbjct: 286 DPGLLLSCGKDNRTLLWDLFSRKTVAEFPSDAPNAPSMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLVTI-ANPQEPAAPNGD-NRRLIHMQRVISDTGLVAEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A3M6VR64_9STRA (Sec16_C domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR64_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.270e-47 Identity = 96/206 (46.60%), Postives = 127/206 (61.65%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
D LL+SC KDNRTLLWDLFS K V E+P + + Q FGG G QRR+ V WSP IPAV STCS D KVQ++ ++G N R PKW RPAGASF FGG+LV+ AG+ ++ + + V D VA + + ++ T+ F+G C++K A+A TA ER VW FM+++FEK+AR LL HLG + E + K
Sbjct: 286 DPGLLLSCGKDNRTLLWDLFSRKTVAEIPSDAPNAPAMGSNQYFGG-GLAGQRRWNVQWSPQIPAVASTCSLDGKVQIWGLSGGGNPNCRPPKWSCRPAGASFGFGGKLVTI--VNPQEPAGSNGDQRRLIHMQRVISDTVLVAEAEALDRSLETKNFKGHCEQKIATATTAGERSVWCFMKILFEKDARQHLLLHLGLNAEEIDK 488
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A662WHK5_9STRA (Sec16_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK5_9STRA) HSP 1 Score: 175 bits (444), Expect = 4.400e-47 Identity = 95/210 (45.24%), Postives = 128/210 (60.95%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFS------ATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D LL+SC KDNRTLLWDLFS K V E P + + Q FGG G QRR+ V WSP +PAV STC+ D KVQ++ ++G R PKW RRPAGASF FGG+LV+ + A GD ++ + + V +A VA + + ++ T+ F+G C++K A+AA A+ER VW FM+++FEK+AR LL HLG D E +
Sbjct: 286 DPGLLLSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPAMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPECRPPKWMRRPAGASFGFGGKLVTIANPQEPVAPNGDR--------RRLIHMHRVVSEAPLVAEAEALDRSLETKDFKGHCEQKIATAANANERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: W2Q284_PHYPN (Sec16_C domain-containing protein n=25 Tax=Phytophthora TaxID=4783 RepID=W2Q284_PHYPN) HSP 1 Score: 175 bits (443), Expect = 6.010e-47 Identity = 94/204 (46.08%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
D L++SC KDNRTLLWDLFS K V E P + + Q FGG G QRR+ V WSP +PAV STCS D K+Q++ ++G R PKW RRPAGASF FGG+LV+ + AG ++ + + V D VA + + ++ T+ F+G C++K ASAAT ER VW FM+++FEK+AR LL HLG D E +
Sbjct: 286 DPGLILSCGKDNRTLLWDLFSRKTVAEFPSDAPNAPSMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLVTIANP--QEPAGPNTDHRRLIHMQRVISDTGLVAEAEALDRSLETKDFKGHCEQKIASAATPEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19533.6290.1 >prot_Ecto-sp13_S_contig19533.6290.1 ID=prot_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp MSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*back to top mRNA from alignment at Ecto-sp13_S_contig19533:414..1777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19533.6290.1 ID=mRNA_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:414..1777- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19533:414..1777- >mRNA_Ecto-sp13_S_contig19533.6290.1 ID=mRNA_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:414..1777- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |