mRNA_Ecto-sp13_S_contig19533.6290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19533.6290.1
Unique NamemRNA_Ecto-sp13_S_contig19533.6290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 5.000e-125
Identity = 204/216 (94.44%), Postives = 204/216 (94.44%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQ----------TVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
            DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELP  NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQ          TVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK
Sbjct:  292 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPQENAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQGATAGGGGSKTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 507          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.220e-69
Identity = 118/208 (56.73%), Postives = 151/208 (72.60%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAA--GNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
            D SL++SC KDNRTLLWDLF L+ VYELP    ++      +MFGG   +AQRRY V+WSP+IPAVVS CSFDRKVQ++SM+GA  S+GRAPKW  RP GA+F FGG+L+SF  +G D ++  G    G +  K++ V E+   VAAS +FE+AM ++ F+G+C+ K A A T +E +VWQFMQVIFEKNAR  LL HLGFD E +AK
Sbjct:  282 DPSLVLSCGKDNRTLLWDLFRLEAVYELPSMSKSKAAGGTGEMFGGIASSAQRRYHVAWSPNIPAVVSCCSFDRKVQVYSMSGAKASSGRAPKWLSRPVGATFGFGGKLLSFGQSGADQSSTPGAPRTGPKHFKVTQVVENPDLVAASTKFEQAMLSKNFKGYCEAKVAEAKTPYEAKVWQFMQVIFEKNARAILLCHLGFDAEAIAK 489          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S1C338_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C338_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.900e-57
Identity = 96/205 (46.83%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQ-MFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            DA +L++C KDNRTLLWDL+ ++ +Y++P       P  +A+ M+GG G + Q+RY V WSP +  V STCSFDRKVQ  S+NGA T +GR PKW +RP+G +F FGG+ VSF+A   DA           +++  V ED    AAS  F+ A+ +   RG C  K A+AATAHE +VW F++++FE++AR +LL HLGFD + +
Sbjct:    4 DAGMLLTCGKDNRTLLWDLYKMESIYDIPNEDAGREPAEDARGMYGGLGSSQQKRYDVQWSPLLRGVASTCSFDRKVQCHSLNGAFTLSGRPPKWTQRPSGVAFGFGGQCVSFAA---DA---------PVLQVRKVVEDEPLAAASAEFDRALDSGDLRGLCASKSAAAATAHEAQVWSFLRILFEEDARAELLTHLGFDAKEI 196          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A7S2R415_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R415_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.610e-56
Identity = 108/210 (51.43%), Postives = 140/210 (66.67%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQ---QTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATA---HERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D SLL+SC KDNRT LWDL   +PVYEL     A  P   +  FGG+G    RRY+VSWSP +PAV+STCSFDRKV ++SM+G  +   +APKW RRP GASF FGG+LV+FS+  G         GQ   Q VK+SSV ED++ V  SR FE+ M  + FRG C +K A+A  A   HE++VW+F+++IFE +AR +LL  LGF+ E +
Sbjct:  282 DTSLLLSCGKDNRTFLWDLCDCRPVYELQAAPTATAP---SGGFGGFGSAFGRRYEVSWSPKLPAVLSTCSFDRKVHVYSMSGTKSQATQAPKWLRRPVGASFGFGGKLVTFSSPPGKP-------GQRVPQVVKVSSVVEDSSIVQVSRAFEQRMGQKDFRGICNDKAAAAEAAGDEHEKQVWEFIKLIFEDDARAKLLDKLGFNAEEI 481          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A2P4XIT7_9STRA (Protein transporter Sec31A (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIT7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.890e-49
Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D  L++SC KDNRTLLWDLFS K V E P       P+ + Q FGG G   QRR+ V WSP +PAV STC+ D KVQ++ ++G      R PKW RRP GASF FGG+LV+  A   + AA N    ++ + +  V  D   V  +   + ++ T+ F+G C++K ASAATA ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLILSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPPMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPACRPPKWMRRPVGASFGFGGKLVTI-ANPQEPAAPNGDH-RRLIHMQRVISDTGLVVEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: M4B6P5_HYAAE (Sec16_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6P5_HYAAE)

HSP 1 Score: 178 bits (451), Expect = 2.270e-48
Identity = 98/204 (48.04%), Postives = 127/204 (62.25%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D  LL+SC KDNRTLLWDLFS K V ELP        + + Q FGG     QRR+ V WSP IPAV STCS D KVQ++S+ G    + R PKW RRPAGASF FGG+LV+ +      A  +    ++ V +  V  D   VA +   + ++ T+ FRG+C++K A+AAT  ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  287 DPGLLLSCGKDNRTLLWDLFSRKTVAELPSDAPDAPAMGSDQFFGGV-LAGQRRWNVQWSPQIPAVASTCSLDGKVQIWSLAGGGNPDCRPPKWMRRPAGASFGFGGKLVTIANP--QEATSHNGDHRRLVHMQRVIGDTRLVAEAEALDRSLDTKDFRGYCEQKIATAATGEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 487          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: H3GVL6_PHYRM (Sec16_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GVL6_PHYRM)

HSP 1 Score: 178 bits (451), Expect = 5.100e-48
Identity = 98/204 (48.04%), Postives = 128/204 (62.75%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D  LL+SC KDNRTLLWDLFS K V E P        + + Q FGG G   QRR+ V WSP +PAV STCS D K+Q++ ++G      R PKW RRPAGASF FGG+LV+  A   + AA N    ++ + +  V  D   VA +   + ++ T+ F+G C++K ASAATA ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLLLSCGKDNRTLLWDLFSRKTVAEFPSDAPNAPSMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLVTI-ANPQEPAAPNGD-NRRLIHMQRVISDTGLVAEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A3M6VR64_9STRA (Sec16_C domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR64_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.270e-47
Identity = 96/206 (46.60%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 618
            D  LL+SC KDNRTLLWDLFS K V E+P        + + Q FGG G   QRR+ V WSP IPAV STCS D KVQ++ ++G    N R PKW  RPAGASF FGG+LV+         AG+    ++ + +  V  D   VA +   + ++ T+ F+G C++K A+A TA ER VW FM+++FEK+AR  LL HLG + E + K
Sbjct:  286 DPGLLLSCGKDNRTLLWDLFSRKTVAEIPSDAPNAPAMGSNQYFGG-GLAGQRRWNVQWSPQIPAVASTCSLDGKVQIWGLSGGGNPNCRPPKWSCRPAGASFGFGGKLVTI--VNPQEPAGSNGDQRRLIHMQRVISDTVLVAEAEALDRSLETKNFKGHCEQKIATATTAGERSVWCFMKILFEKDARQHLLLHLGLNAEEIDK 488          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: A0A662WHK5_9STRA (Sec16_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.400e-47
Identity = 95/210 (45.24%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFS------ATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D  LL+SC KDNRTLLWDLFS K V E P        + + Q FGG G   QRR+ V WSP +PAV STC+ D KVQ++ ++G      R PKW RRPAGASF FGG+LV+ +      A  GD         ++ + +  V  +A  VA +   + ++ T+ F+G C++K A+AA A+ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLLLSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPAMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPECRPPKWMRRPAGASFGFGGKLVTIANPQEPVAPNGDR--------RRLIHMHRVVSEAPLVAEAEALDRSLETKDFKGHCEQKIATAANANERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Match: W2Q284_PHYPN (Sec16_C domain-containing protein n=25 Tax=Phytophthora TaxID=4783 RepID=W2Q284_PHYPN)

HSP 1 Score: 175 bits (443), Expect = 6.010e-47
Identity = 94/204 (46.08%), Postives = 125/204 (61.27%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*NAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 612
            D  L++SC KDNRTLLWDLFS K V E P        + + Q FGG G   QRR+ V WSP +PAV STCS D K+Q++ ++G      R PKW RRPAGASF FGG+LV+ +       AG     ++ + +  V  D   VA +   + ++ T+ F+G C++K ASAAT  ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLILSCGKDNRTLLWDLFSRKTVAEFPSDAPNAPSMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLVTIANP--QEPAGPNTDHRRLIHMQRVISDTGLVAEAEALDRSLETKDFKGHCEQKIASAATPEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19533.6290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD9_9PHAE5.000e-12594.44WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2XZL8_9STRA2.220e-6956.73Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1C338_9STRA5.900e-5746.83Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2R415_9STRA2.610e-5651.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2P4XIT7_9STRA3.890e-4947.06Protein transporter Sec31A (Fragment) n=2 Tax=Phyt... [more]
M4B6P5_HYAAE2.270e-4848.04Sec16_C domain-containing protein n=1 Tax=Hyaloper... [more]
H3GVL6_PHYRM5.100e-4848.04Sec16_C domain-containing protein n=11 Tax=Phytoph... [more]
A0A3M6VR64_9STRA3.270e-4746.60Sec16_C domain-containing protein n=2 Tax=Peronosp... [more]
A0A662WHK5_9STRA4.400e-4745.24Sec16_C domain-containing protein n=2 Tax=Nothophy... [more]
W2Q284_PHYPN6.010e-4746.08Sec16_C domain-containing protein n=25 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19533contigEcto-sp13_S_contig19533:414..1777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.0
Seed ortholog evalue6e-11
Seed eggNOG ortholog2880.D8LBR5
Model size618
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
Exons3
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
Cds size102
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.0536196-UTR-Ecto-sp13_S_contig19533:413..6441681462990.0536196-UTR-Ecto-sp13_S_contig19533:413..644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19533 414..644 -
1681462990.067855-UTR-Ecto-sp13_S_contig19533:989..12591681462990.067855-UTR-Ecto-sp13_S_contig19533:989..1259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19533 990..1259 -
1681462990.1020906-UTR-Ecto-sp13_S_contig19533:1762..17771681462990.1020906-UTR-Ecto-sp13_S_contig19533:1762..1777Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19533 1763..1777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.0774138-CDS-Ecto-sp13_S_contig19533:1259..12611681462990.0774138-CDS-Ecto-sp13_S_contig19533:1259..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19533 1260..1261 -
1681462990.0896993-CDS-Ecto-sp13_S_contig19533:1662..17621681462990.0896993-CDS-Ecto-sp13_S_contig19533:1662..1762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19533 1663..1762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19533.6290.1prot_Ecto-sp13_S_contig19533.6290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19533 1260..1762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19533.6290.1

>prot_Ecto-sp13_S_contig19533.6290.1 ID=prot_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MSCAKDNRTLLWDLFSLKPVYELPPGGGAELPV*
back to top

mRNA from alignment at Ecto-sp13_S_contig19533:414..1777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19533.6290.1 ID=mRNA_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:414..1777- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCGAGCCTGCTCATGTCTTGCGCTAAGGACAACCGCACCCTCCTGTG GGACCTGTTCAGCCTCAAGCCTGTCTACGAACTCCCTCCCGGCGGGGGCG CGGAATTGCCGGTGTGTGACGGTTTCTCTTGTTTTGGCGCGTGTGGTGGG GGCGCTTGGAGTCTGGCCTGTTTGGCCGATGGTTTGCTGCGTTGTTAAAG CATTTACGTACATGGTTATGGCACTACAACGTGAAGCACTCGGGCAGAGG GCGTGCATTGTTGTGATGCGCGTGTCTCAGAAGTCGTACTGTTCCAGGAG AGACACAACAAACCCTGAGATTTCTTTCCAGTCCAAATTTGGTGCGTACG TGTGAGAACCCCCCCCCCCTCCCGCCTGCTCTCATTCCTCGCCTTTTTTT TATGATTGTTTCCATCTCCATGTCGCCTAACGCCCCCTCACGCCCCCACC TCTTACCCCCGTCTTGAAACGCCACAAACGATGCACCCATCGCAACAACA ACAAAAAAACAGCAAGAAAACGCTCAGATGTTCGGAGGGTACGGCAAGAC CGCCCAGCGGCGGTACCAGGTGTCGTGGTCCCCCCACATCCCCGCCGTGG TGAGCACGTGCTCCTTCGACCGAAAGGTCCAGCTGTTCAGCATGAACGGC GCCAGCACCTCGAACGGCCGGGCTCCCAAGTGGCACCGCCGCCCCGCCGG AGCTTCGTTCGCGTTCGGCGGCCGCCTCGTCTCCTTCTCCGCGACCGGCG GGGACGCGGCGGCGGGGAACGCCGCCGTCGGCCAGCAGGTGAGGGGAGTG GGTGTTTGGGTTGGTGGGAGGTTTACAGGTTTTGGGGGAAGTGGGAGAGG GGGGGGGGCGTCGCTTTGGGTCCGGTCTGTGCTCCATCATCTTTGTATGG GACTTGGTTTTTTAGCTCTCGTTCGCTCGATTTGCAAAGTGGTCTACCGC TCATTCGCCGTGTACTGCAGTAGCTGCGGCGACACTGCGGTGTTGTGTTG TATGTATCCGCTTTCTAACCCCATACCACCCCAAGTCCTCGTCCGCACTA CCATAAGGTTGCACACACCCACACACAACGCGCGCGTGTGTACGAACGTG TAGGGTGCCACCGCCGGCGGTGGTGGAAGCAAGACTGTCAAGATATCGTC AGTGAAGGAGGACGCCGCGTTCGTGGCCGCGTCGAGGCGGTTCGAGGAGG CCATGGCGACCCAGGGGTTCCGCGGTTTCTGCCAGGAGAAGGAGGCCTCG GCCGCCACCGCGCACGAGCGTCGGGTGTGGCAGTTCATGCAGGTCATCTT CGAGAAGAACGCCCGGAACCAGCTCCTGGCGCACCTCGGCTTCGACGGGG AGACGGTGGCGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19533:414..1777-

>mRNA_Ecto-sp13_S_contig19533.6290.1 ID=mRNA_Ecto-sp13_S_contig19533.6290.1|Name=mRNA_Ecto-sp13_S_contig19533.6290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:414..1777- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTGCGCTAAGGACAACCGCACCCTCCTGTGGGACCTGTTCAGCCT
CAAGCCTGTCTACGAACTCCCTCCCGGCGGGGGCGCGGAATTGCCGGTGT
AA
back to top