mRNA_Ecto-sp13_S_contig19518.6281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19518.6281.1
Unique NamemRNA_Ecto-sp13_S_contig19518.6281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: D7FP44_ECTSI (Sirohydrochlorin ferrochelatase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP44_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.000e-53
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 3
Query:    3 AAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESVSGGAWRHGGE 281
            AAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIP+LMVAAAKRHPGV WVVSEPLGLQELMPRVMHAAVSESV+GGAWRHGGE
Sbjct:  123 AAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPALMVAAAKRHPGVGWVVSEPLGLQELMPRVMHAAVSESVAGGAWRHGGE 215          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A836CEJ2_9STRA (CbiX-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.590e-34
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESVSGGAWRHG 275
            AHMELAEP+IE+AFD+CVAAGA+ VVLHPFFLSPGRHV+SDIP L+ AAA RHPGV W VSEPLGL  LMP++M+ AV+ ++    W+ G
Sbjct:   29 AHMELAEPTIEQAFDKCVAAGAKAVVLHPFFLSPGRHVSSDIPELLAAAASRHPGVKWKVSEPLGLAPLMPQLMNDAVAAALQEPEWQGG 118          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A7G9NWY9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NWY9_9BACT)

HSP 1 Score: 105 bits (263), Expect = 3.870e-24
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESV 251
            AHMELAEP+IE+AFDRCV  GA+ VV HPFFL PG+H   DIP+L  AAA +HPG+ W+V+ P+G+ E MP VM+ A+   +
Sbjct:   47 AHMELAEPTIEQAFDRCVQRGAKVVVCHPFFLLPGKHWNQDIPNLTAAAAGKHPGIRWMVTAPIGMNEKMPLVMNDAIDHCL 128          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A3D3W099_9PLAN (Sirohydrochlorin cobaltochelatase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D3W099_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 3.040e-22
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESVSGGAWRHGGE*RSTLLGCPPYPWPGGVGKEV*LISPELRS 371
            AHMELAEPSI++AFDRCVA GA +VV+ P+FLSPGRH T DIP L+  AA  HPGV W+V+ P GL + + + +   V  S+     RH        L   P P P      +  I+P L S
Sbjct:   45 AHMELAEPSIQQAFDRCVAQGAGRVVVFPWFLSPGRHWTEDIPRLVQQAAAAHPGVEWLVTPPFGLHQGLLQAVQDRVDVSL-----RH-------FLSATPQPAPAETSNGI-PIAPRLNS 153          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A6P4DL50_ARADU (sirohydrochlorin ferrochelatase, chloroplastic isoform X1 n=7 Tax=Arachis TaxID=3817 RepID=A0A6P4DL50_ARADU)

HSP 1 Score: 101 bits (252), Expect = 4.950e-22
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVS---ESVSGGA 263
            AHMELAEPSI +AF  CV  GAQ+VV+ PFFLSPGRH   DIPSL   AAK HPGV+++V+ PLGL EL+  VM+  +    + +SG A
Sbjct:   95 AHMELAEPSIRDAFQSCVEQGAQRVVISPFFLSPGRHWNQDIPSLSSEAAKEHPGVSYIVTAPLGLHELLVDVMNDRIKHCLKHISGDA 183          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A3M2BXR8_9BACT (Cobalamin biosynthesis protein CbiX n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BXR8_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 9.650e-22
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESVSGGA 263
            AHMELAEPSI  AFDRCVA GA++VV+ P+FL PGRH T DIP L   AA+RHPGVA++V+ P+GL  LM  V+ A +   ++  A
Sbjct:   53 AHMELAEPSIATAFDRCVARGARRVVVLPYFLLPGRHWTDDIPELTRRAARRHPGVAYLVAAPIGLHPLMLEVLAARLQHCLAHAA 138          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A1S2XH14_CICAR (sirohydrochlorin ferrochelatase, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XH14_CICAR)

HSP 1 Score: 100 bits (249), Expect = 1.330e-21
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVS---ESVSGGA 263
            AHMELAEPSI +AF  CV  GA++V++ PFFLSPGRH + DIPSL  AAAK+HPGV+++V+ PLGL EL+  V++  ++   + V+G A
Sbjct:   96 AHMELAEPSIGDAFQSCVQQGARRVIISPFFLSPGRHWSQDIPSLSAAAAKQHPGVSYIVTAPLGLHELLVDVVNDRITYCLKHVAGDA 184          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: UPI000DEC597C (sirohydrochlorin ferrochelatase, chloroplastic-like n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC597C)

HSP 1 Score: 98.2 bits (243), Expect = 1.410e-21
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVS---ESVSGGA 263
            AHMELAEPSI +AF  CV   AQ+VV+ PFFLSPGRH   DIPSL   AAK HPGV+++V+ PLGL EL+  V++  +    + +SG A
Sbjct:   21 AHMELAEPSIRDAFQSCVEQDAQRVVISPFFLSPGRHWNQDIPSLSAEAAKEHPGVSYIVTAPLGLHELLVDVVNDRIKHCLKHISGDA 109          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: D8TC46_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TC46_SELML)

HSP 1 Score: 99.0 bits (245), Expect = 1.730e-21
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 3
Query:    3 AAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELMPRVMHAAVSESVS 254
            AAHMELA PSIE+AFDRCV  GAQ+V++ P+FL PGRH   DIP+L  AA+ +HPG+ ++V+ P+GL ELM  V+   +   VS
Sbjct:   56 AAHMELAAPSIEDAFDRCVELGAQRVIVSPYFLFPGRHWNKDIPALAAAASAKHPGIRYLVTAPIGLHELMVDVLEDRMKYCVS 139          
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Match: A0A444Y3H4_ARAHY (Uncharacterized protein n=2 Tax=Arachis TaxID=3817 RepID=A0A444Y3H4_ARAHY)

HSP 1 Score: 99.0 bits (245), Expect = 2.310e-21
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 3
Query:    6 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKRHPGVAWVVSEPLGLQELM 215
            AHMELAEPSI +AF  CV  GAQ+VV+ PFFLSPGRH   DIPSL   AAK HPGV+++V+ PLGL EL+
Sbjct:   98 AHMELAEPSIRDAFQSCVEQGAQRVVISPFFLSPGRHWNQDIPSLSAEAAKEHPGVSYIVTAPLGLHELL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19518.6281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP44_ECTSI2.000e-5396.77Sirohydrochlorin ferrochelatase, putative chloropl... [more]
A0A836CEJ2_9STRA8.590e-3468.89CbiX-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7G9NWY9_9BACT3.870e-2458.54Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A3D3W099_9PLAN3.040e-2246.72Sirohydrochlorin cobaltochelatase n=2 Tax=Planctom... [more]
A0A6P4DL50_ARADU4.950e-2258.43sirohydrochlorin ferrochelatase, chloroplastic iso... [more]
A0A3M2BXR8_9BACT9.650e-2258.14Cobalamin biosynthesis protein CbiX n=1 Tax=Acidob... [more]
A0A1S2XH14_CICAR1.330e-2156.18sirohydrochlorin ferrochelatase, chloroplastic n=1... [more]
UPI000DEC597C1.410e-2156.18sirohydrochlorin ferrochelatase, chloroplastic-lik... [more]
D8TC46_SELML1.730e-2155.95Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A0A444Y3H4_ARAHY2.310e-2167.14Uncharacterized protein n=2 Tax=Arachis TaxID=3817... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19518contigEcto-sp13_S_contig19518:632..1660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score179.5
Seed ortholog evalue7.1e-43
Seed eggNOG ortholog2880.D7FP44
Model size1013
KEGG rclassRC01012
KEGG koko:K03794
KEGG ReactionR02864
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016829,GO:0018130,GO:0019354,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046156,GO:0046483,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051266,GO:0051536,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.sirohydrochlorin cobaltochelatase activity
EggNOG OGs2RXIW@2759,COG2138@1
Ec32 ortholog descriptionsirohydrochlorin ferrochelatase, putative chloroplast precursor
Ec32 orthologEc-10_002430.1
EC4.99.1.4
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.373064-UTR-Ecto-sp13_S_contig19518:631..6421681462989.373064-UTR-Ecto-sp13_S_contig19518:631..642Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19518 632..642 +
1681462989.4008334-UTR-Ecto-sp13_S_contig19518:915..14711681462989.4008334-UTR-Ecto-sp13_S_contig19518:915..1471Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19518 916..1471 +
1681462989.4097846-UTR-Ecto-sp13_S_contig19518:1487..16601681462989.4097846-UTR-Ecto-sp13_S_contig19518:1487..1660Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19518 1488..1660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.3879447-CDS-Ecto-sp13_S_contig19518:642..9151681462989.3879447-CDS-Ecto-sp13_S_contig19518:642..915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19518 643..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19518.6281.1prot_Ecto-sp13_S_contig19518.6281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19518 643..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19518.6281.1

>prot_Ecto-sp13_S_contig19518.6281.1 ID=prot_Ecto-sp13_S_contig19518.6281.1|Name=mRNA_Ecto-sp13_S_contig19518.6281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPSLMVAAAKR
HPGVAWVVSEPLGLQELMPRVMHAAVSESVSGGAWRHGGE*
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mRNA from alignment at Ecto-sp13_S_contig19518:632..1660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19518.6281.1 ID=mRNA_Ecto-sp13_S_contig19518.6281.1|Name=mRNA_Ecto-sp13_S_contig19518.6281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19518:632..1660+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGCACATATGGAGCTCGCGGAGCCGAGCATCGAGGAAGCCTTCGAT CGCTGCGTGGCCGCGGGCGCGCAGAAAGTAGTCCTGCACCCGTTCTTCCT GAGCCCCGGCCGGCACGTTACGTCGGACATCCCGTCGCTCATGGTCGCGG CCGCGAAGCGGCACCCAGGAGTAGCTTGGGTCGTGTCGGAGCCGCTGGGG CTTCAGGAACTAATGCCCCGGGTGATGCACGCGGCCGTATCGGAGTCGGT TTCGGGAGGAGCGTGGCGACACGGCGGAGAGTAGCGCTCTACATTGCTCG GATGCCCCCCATATCCATGGCCTGGTGGTGTGGGGAAGGAGGTTTAGTTG ATCTCCCCCGAGTTGCGTTCGAGCTACCGTCTTCGAGGGAGTTGGAAGGG AAAATATTTTTTTTTCTGTGCAAACCGTGTGGTTTATCTTCTTTCCTCGT TGGTGTGAAGTGTCGCTCATTCTTTTTGGTTGGGTTGTTCACTCCCCCCT CCTTGGCAGGTGCTTGAAACTGCTTCGACACATGTTTAAACTACTCGCTT TGGCAAATCAAGTCGCTGGTACTCTGTCTCCCCATGTCTGTTTAAGCCCC CGTGTTTCGACCACCAAATCGTGCGTGTATGCTGTTGCGTGCAGAAGGAA GCCAAGCGCTGCGTTTGTTTCACTTTGGAAGGACAGCGCGTCTACTTTGC CTGTTGGATGATAGCACTGACCCTCGGTTGATAAGAGGGGGTGCCCAACC AACGTAGACCCGCGTGTAAAACGCGAATGACCATCGCAAGGATTTGTTGG CGACACTTCAATGCTTTAGACACCTGCTGTCAGAGCAGTGGTGGTCCTTG TCAGAGAATTGGATCCATCAACTGAGTTGTTACGTGTCTTTCAATGCACG AATGCTCCCTTTATTGCGTACTCTCTAGCCGCACCCTCCTGCCTGCGGTT CCCGTTGCCGGCCTATCTCTAGTGTTATCCACCAACCGGAGACGAAATCA CGGTTTGTTTACGAAGCGCCCTCTGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19518:632..1660+

>mRNA_Ecto-sp13_S_contig19518.6281.1 ID=mRNA_Ecto-sp13_S_contig19518.6281.1|Name=mRNA_Ecto-sp13_S_contig19518.6281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19518:632..1660+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTCGCGGAGCCGAGCATCGAGGAAGCCTTCGATCGCTGCGTGGC
CGCGGGCGCGCAGAAAGTAGTCCTGCACCCGTTCTTCCTGAGCCCCGGCC
GGCACGTTACGTCGGACATCCCGTCGCTCATGGTCGCGGCCGCGAAGCGG
CACCCAGGAGTAGCTTGGGTCGTGTCGGAGCCGCTGGGGCTTCAGGAACT
AATGCCCCGGGTGATGCACGCGGCCGTATCGGAGTCGGTTTCGGGAGGAG
CGTGGCGACACGGCGGAGAGTAG
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