mRNA_Ecto-sp13_S_contig19509.6277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19509.6277.1
Unique NamemRNA_Ecto-sp13_S_contig19509.6277.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: D7G897_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G897_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.550e-29
Identity = 69/84 (82.14%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:  294 MKSQPRAAPVSARAIATNAPSASASNTAANATSAVPAATALGGSLSTQDVSFRGRRGHGNRVKHSSINVPKAPAIVAVCEVIDR 545
            MK QPRAA V ARAIATNA SASASNTAANATSAVPA TA GGSLSTQ VS RG  GHGNRVK S INV KAP I AVCEVIDR
Sbjct:    1 MKRQPRAALVPARAIATNAASASASNTAANATSAVPAVTAFGGSLSTQGVSLRGHGGHGNRVKQSYINVAKAPTIHAVCEVIDR 84
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: D7G895_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G895_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.420e-9
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  354 SASASNTAANATSAVPAATALGGSLSTQDVSFRGRRGHGNRVKHSSINVPKAPAIVAVCEVIDR 545
            SA  S TA N T   P+AT+  GSLSTQ V+FRG  G+ N V   ++N P+APAIVAVCEVIDR
Sbjct:  207 SARGSITAVNPTGIAPSATSFVGSLSTQGVAFRGVSGNRNTVDPPAVNAPQAPAIVAVCEVIDR 270
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.680e-6
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   64 PVLYPLLEWLLWTTHGRHLHLLREAEAIQG 153
            P+LYPLLEWLL T HG HLHLL+EAEAI+G
Sbjct:  654 PLLYPLLEWLLSTIHGGHLHLLKEAEAIEG 683
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: D7FUS7_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS7_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.370e-5
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 VLYPLLEWLLWTTHGRHLHLLREAEAIQG 153
            +LYPLLEWLL T HG HLHLL+EAEAIQG
Sbjct:  292 LLYPLLEWLLSTIHGGHLHLLKEAEAIQG 320
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-5
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    4 GEGISC--RRDCTAERGAVEE-----QPVLYPLLEWLLWTTHGRHLHLLREAEAIQGFRARS 168
            GEG +   RR  T E   ++E      P+ YPLLEWLL T HG  LHLL+EAEAI+G   ++
Sbjct:  576 GEGSNAGERRSPTGEVSPLKEALSKINPLSYPLLEWLLSTAHGGQLHLLKEAEAIEGISCKN 637
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BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Match: A0A6H5JCJ2_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.300e-5
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   22 RRDCTAERGAVEE-----QPVLYPLLEWLLWTTHGRHLHLLREAEAIQG 153
            R+  T E   ++E      P+ YPLLEWLL T HG  LHLL+EAEAIQG
Sbjct:  162 RKSPTGEVSPLKEALSKINPLSYPLLEWLLSTAHGGELHLLKEAEAIQG 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19509.6277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G897_ECTSI3.550e-2982.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G895_ECTSI8.420e-959.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA28_9PHAE7.680e-680.00PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FUS7_ECTSI2.370e-582.76PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7G896_ECTSI2.490e-548.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCJ2_9PHAE8.300e-555.10PARP catalytic domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19509contigEcto-sp13_S_contig19509:8..2863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size548
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003660.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.015711-CDS-Ecto-sp13_S_contig19509:7..3611681462989.015711-CDS-Ecto-sp13_S_contig19509:7..361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19509 8..361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.0266497-UTR-Ecto-sp13_S_contig19509:361..3721681462989.0266497-UTR-Ecto-sp13_S_contig19509:361..372Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19509 362..372 -
1681462989.0367038-UTR-Ecto-sp13_S_contig19509:2412..24941681462989.0367038-UTR-Ecto-sp13_S_contig19509:2412..2494Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19509 2413..2494 -
1681462989.0462413-UTR-Ecto-sp13_S_contig19509:2762..28631681462989.0462413-UTR-Ecto-sp13_S_contig19509:2762..2863Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19509 2763..2863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19509.6277.1prot_Ecto-sp13_S_contig19509.6277.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19509 8..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19509.6277.1

>prot_Ecto-sp13_S_contig19509.6277.1 ID=prot_Ecto-sp13_S_contig19509.6277.1|Name=mRNA_Ecto-sp13_S_contig19509.6277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MIHGAAEGKDIYMTASPSKAVAYTLDDSWVRDTMKSQPRAAPVSARAIAT
NAPSASASNTAANATSAVPAATALGGSLSTQDVSFRGRRGHGNRVKHSSI
NVPKAPAIVAVCEVIDR*
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mRNA from alignment at Ecto-sp13_S_contig19509:8..2863-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19509.6277.1 ID=mRNA_Ecto-sp13_S_contig19509.6277.1|Name=mRNA_Ecto-sp13_S_contig19509.6277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19509:8..2863- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGGTGAAGGGATCTCCTGCCGAAGAGATTGTACCGCTGAAAGAGGCGC
TGTCGAAGAGCAACCCGTTTTGTACCCCCTTCTGGAGTGGCTGTTATGGA
CGTGAGTGATTGAAGTTGGGGATGATGTTATTGGAGGAAAGGTACAGCTT
TGCGCGCGTGAGGTGCTGATTACGGGGACGAAAGGGCTGCTAAAACGTCG
TGCCTCGTTTCGTCGCTGGTATGTACGAGTTTTCTTCGGTTTAAGTTTGT
TGTGTGCTGCTTCTCCGCTGCAGTTCTTCATATCCCATTGATTTGTTTCT
CGTTCGAATGTTGTATGAACTTCGCTCGCTCCTCAACACTTTGCACGTTT
TCTCCTTCCTTGGGTTCAGGACTCATGGACGACACCTTCATCTTTTGAGG
GAAGCTGAAGCTATCCAGGGATTTCGTGCGAGAAGCAGTTCGTGCTCACA
GGTGCGCGACTCATCTGCCTTAGCAACGTCTACTCTCTTGCTACTGTACC
TGTAGGTTGAATGAACCCTTTGCTGAGTACCACGAGAGATTGAGCCTACT
GCATATGTAGCGCGTCTGCTGCTGTTGACGCATTTCTATTTACAATTGTC
CATCCAGGTCTCCCAGAATGTTTCCCGTGCCTCCACTTATCTGTCTGCCC
CACACGTTCTCTCAATAGTTTCGCATGAGGTTTCCTCGCCATCTTTCCGC
AAGCGAGTCACGTCGGGAGAACTATCAACGATGGTTGTATGCCGTCAACC
CCACGAAGACGTTCTGCTGTCTCTTGCTGGGCAGGGTCAAAATTGTGAGG
GAGGTGGTGTTGGATGGCTGATGTGTTAGTTGCTTCGTTGACCAACTGAA
GTTCGAAATAAAAACAAAATTTTGGGTATTGTGGCTTGTTTAGTTCGACG
CCATGTTTTCTTGACATCCCATTAGACGGATATGAGGATACGAGGCTTGC
ATGAAACTTTTCTGCATGTTTCAAACGTGATTTCTGCCATTTGTGTTCGT
TCTTTGTTGTGGTTGCGGTGCAACGTAAAGACACCTCAGAGCGAGAGGAG
CGTTTTCAGGCGATGAAGCGGGAGGTGGAGATTTCGTTGAACGGGACAGG
GTAGTTTTTCGCGTTCCATGGTAGCGCTGCGGACAACTGGCACGTAATCC
TTCGCTTGGGCATCAAGAACATGTCCAGTATGTGTTCTATCTACCGCGGT
GCTGCAGAAGACTAAGAATGCAAGCGAAGGTTCTCGGTCCCGTTGGTTGT
CCGCCGGGCGAGTGCTTTTTGCCACGTCCAGTCACGGTCCGTGGTGCTAG
TGTGTCCTCAGTTACTCCTGTTCGTGAGTGGTCGGTGTCACTTTCTGGCT
CATGGAAGATTACGGAATTAAGACCATGTATTGCATACAGTACCTGCATA
CTCATTCCAATACTGAGCTTGTACGGATATCTTGAGATTGGCCTTCCACA
ACGTGTTCCGTCGGGTAGACCTATGCAAACCGAACCACAACAGTAACCAC
ATTAAGCGATCGTACAGTAGAAACCGTGAAGAACAACATTTGCTTCAAGC
AGACAACTTCTGCAACAAGATGTTGGTGTGGCAAAACCGCCTCAAAAACG
CCTCAAGTAGTTTTTTGCAACATGATCTCTATGGACCTCGGGGAAGGACA
ATGCTTCTCGTTTGAGGGTACTCTGTCATCCCTGACATCACCCGTGGTGC
GGGAGGTATTCTCATAACGTACGCTAATCTTTTCAGAGAGTGGAACGGTA
CGAAGTGGATGGATTCATCTTCTACTGCAGTTGATTAAATTTCGTTAATT
TCGTGTTTGTTGTCTACACGTCCCGCCCGCGTTCGTCCCTCCCTCCATCT
CTCTACAATGGCAACCCGCTCGTACGAAGCAAATGATTTTGAACAAGCAA
AAAAAATCATATCTTCACCAAATGTTGTATTCCTGGCCGATACCAGAGCA
CCACTCTTGCTGTTTCCTTGTCGCTTGTTTCAAGCCAAACACCGATTCTC
TTGGTTCTGTCGACTCCATTGGCATGAGCACGAATGTTTTTTACCGTCGC
ACAACACCTGCCTGTCGTACGCGAGTACCCGCTGCAGTGTATTTCAATTC
GCGACTGTCACACATTTTCCACTTCACTTTTCTCAAGCATTATGCGGAAC
GCGCCACCACTTGATAACTCAGGAGTTACGAATTTGAGCCAAATTGAATT
CAACACTTATGAACTTGAGCACCATGTGTGAGCTCGGTTAAGAAGCCCTA
CACTAAAACCTATATACCGACCGTTCGTAGCATGACCCTAGGAACAAAGA
ATCCCAGCCTCGGCCAAACCTAGAGGCCCTTCATCAATTGGTGGTGCGTT
CTGAATGTTAACGACTAGTCATGCGTTTGGACAAATGAGCGGAAGAGATT
TCCCCTTGCGAAGTCTACACGCGTCGAGGAGACATGGCCACTGCGAGGAC
AATTCCCCAAGCCTCTCCCCCAATCCCTCCTTCAACAACAGGTTCGGAGT
ACATGATTCACGGGGCTGCTGAAGGCAAAGACATCTACATGACTGCTTCA
CCTTCGAAGGCGGTTGCATACACTTTGGATGATAGCTGGGTTCGAGATAC
GATGAAATCACAGCCGAGGGCGGCGCCCGTGTCGGCGCGGGCGATCGCTA
CCAATGCTCCCAGTGCCAGTGCTTCCAATACGGCTGCCAATGCTACCAGT
GCTGTTCCTGCGGCCACCGCCCTTGGAGGAAGCCTTTCGACCCAAGACGT
TTCATTTCGCGGTCGCCGCGGGCACGGCAACAGGGTGAAACATTCCTCCA
TCAACGTACCGAAAGCGCCCGCCATAGTTGCTGTTTGCGAGGTCATCGAC
AGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19509:8..2863-

>mRNA_Ecto-sp13_S_contig19509.6277.1 ID=mRNA_Ecto-sp13_S_contig19509.6277.1|Name=mRNA_Ecto-sp13_S_contig19509.6277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19509:8..2863- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCACGGGGCTGCTGAAGGCAAAGACATCTACATGACTGCTTCACC
TTCGAAGGCGGTTGCATACACTTTGGATGATAGCTGGGTTCGAGATACGA
TGAAATCACAGCCGAGGGCGGCGCCCGTGTCGGCGCGGGCGATCGCTACC
AATGCTCCCAGTGCCAGTGCTTCCAATACGGCTGCCAATGCTACCAGTGC
TGTTCCTGCGGCCACCGCCCTTGGAGGAAGCCTTTCGACCCAAGACGTTT
CATTTCGCGGTCGCCGCGGGCACGGCAACAGGGTGAAACATTCCTCCATC
AACGTACCGAAAGCGCCCGCCATAGTTGCTGTTTGCGAGGTCATCGACAG
GTAA
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