mRNA_Ecto-sp13_S_contig1950.6275.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1950.6275.1
Unique NamemRNA_Ecto-sp13_S_contig1950.6275.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1950.6275.1 vs. uniprot
Match: A0A6H5KJ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ84_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.380e-56
Identity = 96/109 (88.07%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:  214 MAAFLRDENCTQADFAAVLTRAHAEGAHGKESLGSLVIETMTAVDDFESFTNFMNNAVAGEHEDNSDAAPEIAAVQDGEEESKRCQLESDSSDGCNEGAADTAARRRRK 540
            MAAFLRDENCTQADFAAVLTRAHAEGA GKESLGSLVIETMTAVD+FESFTNFMNN VAGEHEDNSD AP+   VQDGEEESKRC+LESD SDG NEGAADTA R RRK
Sbjct:    1 MAAFLRDENCTQADFAAVLTRAHAEGALGKESLGSLVIETMTAVDEFESFTNFMNNTVAGEHEDNSDGAPDYTTVQDGEEESKRCRLESDGSDGSNEGAADTAVRSRRK 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1950.6275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ84_9PHAE6.380e-5688.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1950contigEcto-sp13_S_contig1950:11139..14154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons3
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.8977482-CDS-Ecto-sp13_S_contig1950:11138..113741681462988.8977482-CDS-Ecto-sp13_S_contig1950:11138..11374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1950 11139..11374 -
1681462988.9086475-CDS-Ecto-sp13_S_contig1950:11923..120361681462988.9086475-CDS-Ecto-sp13_S_contig1950:11923..12036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1950 11924..12036 -
1681462988.918203-CDS-Ecto-sp13_S_contig1950:13960..141541681462988.918203-CDS-Ecto-sp13_S_contig1950:13960..14154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1950 13961..14154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1950.6275.1prot_Ecto-sp13_S_contig1950.6275.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1950 11139..14154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1950.6275.1

>prot_Ecto-sp13_S_contig1950.6275.1 ID=prot_Ecto-sp13_S_contig1950.6275.1|Name=mRNA_Ecto-sp13_S_contig1950.6275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MNDCTYNRLVNSCVDHFLEVLGPQLDRWAETKASRWKDNVEDEQAIEDEG
HTHWQARTLKRFKLAKLFEQVMAAFLRDENCTQADFAAVLTRAHAEGAHG
KESLGSLVIETMTAVDDFESFTNFMNNAVAGEHEDNSDAAPEIAAVQDGE
EESKRCQLESDSSDGCNEGAADTAARRRRK*
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mRNA from alignment at Ecto-sp13_S_contig1950:11139..14154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1950.6275.1 ID=mRNA_Ecto-sp13_S_contig1950.6275.1|Name=mRNA_Ecto-sp13_S_contig1950.6275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1950:11139..14154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGATTGCACATATAATCGTCTGGTGAACTCCTGTGTCGATCACTT
TCTTGAAGTCCTCGGGCCTCAACTGGACCGTTGGGCAGAGACCAAGGCCA
GTCGTTGGAAAGACAATGTCGAAGATGAACAAGCAATCGAGGACGAAGGC
CATACACATTGGCAGGCGAGAACACTCAAAAGATTTAAATTGGCGTGCAT
TTATGTGCTACCAACCTGGTACTGAGAATGAAGGATAGCTCTTGTTTGTG
TACGAAATTCGGCGCTGCTTGTGATTCTGCCTTTGGTACAGTAGTCTGGG
GACGTGATCGTGTGCGTACATAGTGCGTTGTACAATCGGTTTCCCATTTC
ATGCAAGAAAGTGGTCTGGAGAGCGTGTACCTCCCCTCTCTGTTACGTTG
TCCGCAGTTCGACATCTTCTACCTGGAGCTTGTTTGCAGGGATAGGAGTG
TTGTGTATCATAATGTTGCGACTCAATGGAGTCCGCGAGCAAATCGAGAC
AGAGTACCTCTAGAAGCGACGACATCACTATCGTGGGCATGAATGTGTGA
TTCTGGGCTACAAGAAAAAGGGGCGAGTCTATGTGCTTGGTGGGTCTACA
CATTCTGGGACTGCACGCGAGGAAGCTAACGTCTTGCCACCGAATGATCA
AGGGTCAGTACTCTGCCACGATCGACATAAAGTGTAGAGACGAAGTCCAA
TTGCGTCATGTTTCTCTTGTATTACAATGCCATCGTCCGTCCTCCGTCGG
ACTCGCTGTGATAAACGTTTCTCAAGGCGCCCGCGCTTAGACTACACTCT
TTGAAAATACTGTGTGAGGTTCGCGATGAGCCTCAGTATTTGAAAGTGGA
AAGTGTTCTTTGTTGAACGAGATTCCGTTCTTTCTGGAAGCCGATAATGA
CCGCATGGGGCAAACCTACCCTCCTCATAGGTACGAATGGTAAACCTCAC
TAACTTTTGACGGGTGCGTCCCATGCTGTCCTCCTGCTCGCAACTTTCAC
GTATGTTTCTGTCCCGTGGCTTCTGTGTCGTGTATTCCTTGTGTTCTGGC
CTCAATACGATCAGTTCGAGGACCACCAAGATTTTAGGTGAGAATTGTCT
CGGGGCTTCCACTTTTTAGAGTTGGTGAGGTCTTGTTCCCAGGGGAGTCG
GGAAACCTGTCGACAAACTTACTATCCTCAGCAGGTCAAATTTGTACGTC
CGTTGTACATAACCATGCTCGAAGTATTGCAGAGCCTCTCGGGGAAGACA
TCAGGCACTGGTTGGCAAAGGTTGGAGTTTTAGTCTCGCTAAGAAGGGAA
ACGAAGAAAAATCATCCAACTGGGTATCTAGCTTGAACGCGTAGAGCCAT
GGGGAGTGATGAAAAGGAAGGGGGGCCTTCTCGTCGTAGGAATACGTAAA
CTCAGAAGGGGTCATACGGGTATTTTTGGCCAACAGGTTTGTTGGGTACT
ATCCCAAGGTTGTGAGTTGGTGGATATTGTGCAATCTTTCCGAAACGTGG
TGGGATACGGGTTGTCGGGTGGTTTTCGCTCAAACCAAGCTCGTTGCAGA
TCCCAGAGCTCGAACAATTACATGTTTTTACAAAAAGAGGGCCTTTTTCC
ACGAGAAATTTCGTTGAGAGACGGGGTTTTTCTATTTCAGCTGAGGGTTT
CAGATATCATGACAACCACCCGCCAAACTCGCCCCAGAGTTGCGCACCTT
GGTGGCAGGAGAACCATCTCGACAGCATGGTCGCTCTTGCCACAATCTGT
TCGACGTGCAGCACGTATAGTCCCCTGTTCCGGCTTCTTGTCGTCTCGAA
ATGCGGCAGTATACACTCCTTGCCTGTGTGTCCCAAGCACAGCGTTGAAG
TCGGCCTGAGTTTCACACAGGAATAATTTCTCTGGCAACGAAAAAATGGC
ACCGGTAGTTGAGGAAGAGGCAGCAAACAATCACATAGCCTAGCGTATCG
ACGGACTTGCCTTCGCCGTTTTTGTAGCATTGTGTGGTTCAATTTGTACC
TGTACTGGGCTCAACCCCATATTCTAACACCCCAGAAGAGTCCAGACAGC
CGAACGAGCTCTCCCTGTGCAGCGACGACGGCGCGTGTTGTGTTCCATGC
GCGATGTTGCCTTTTCAGAAAGCTCTTCGAACAAGTCATGGCGGCTTTCT
TACGTGACGAAAACTGCACCCAGGCTGACTTTGCCGCCGTGCTTACGCGC
GCTCACGCTGAGGGGGCACATGGGAAGGAAAGTGAGTACACGTTAGTAGA
AAAGGTGCACCGTACATGTCAGGTGTCTCGATCGATCAGGCTTTTCAAAT
AAGATTTTGGGTCGTTCCCGGCAACAATGCAAAGGGTTGGCCGCATGACA
AACTTGTTGCGGAAGTTGCACGTGGGGTTTTAGATGTGTAAAGGTGTTCG
CTGAGGATTGTTGTGCGTATACTAGCATCATACCACAGCTTAGGCTTCTC
TCGCACTGTCTGGCCACTGCTTCAAGTATTGCTTCTACCGGCCGATATTG
CTAAAACAGGAACCATAAAAGGAACGACACAGAGGACGTCGCCGCTGTTT
GAAAGCACGCTAGAGCATCCCTGGTGTCATGGAAGGTTACGTGTACCAAA
CTTGGTGCAACCGGGTTCGTCTTTTTGCTATCGTCACACTGTAAATACCT
CTCCTTTCGTAAAAAAAATACTTTCAAAAACGCAAGGTGCCCCCTCCCCC
TCCCCCCTGCCCGCCCCTTCATTGTGATCATTGTGCATTTTCGCATCGTG
TGGTCTTGATCGACTGGATCGTCGGGGTAGGTTTGGGCAGCCTGGTCATC
GAGACCATGACGGCCGTGGATGACTTCGAGTCTTTCACTAATTTCATGAA
CAACGCCGTGGCTGGTGAACACGAGGACAATAGCGACGCCGCACCCGAAA
TCGCGGCCGTCCAGGATGGGGAGGAAGAGAGCAAGCGATGTCAACTTGAG
AGTGACAGTAGCGATGGTTGCAACGAGGGGGCTGCTGATACCGCGGCAAG
AAGGAGACGGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1950:11139..14154-

>mRNA_Ecto-sp13_S_contig1950.6275.1 ID=mRNA_Ecto-sp13_S_contig1950.6275.1|Name=mRNA_Ecto-sp13_S_contig1950.6275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1950:11139..14154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGATTGCACATATAATCGTCTGGTGAACTCCTGTGTCGATCACTT
TCTTGAAGTCCTCGGGCCTCAACTGGACCGTTGGGCAGAGACCAAGGCCA
GTCGTTGGAAAGACAATGTCGAAGATGAACAAGCAATCGAGGACGAAGGC
CATACACATTGGCAGGCGAGAACACTCAAAAGATTTAAATTGGCAAAGCT
CTTCGAACAAGTCATGGCGGCTTTCTTACGTGACGAAAACTGCACCCAGG
CTGACTTTGCCGCCGTGCTTACGCGCGCTCACGCTGAGGGGGCACATGGG
AAGGAAAGTTTGGGCAGCCTGGTCATCGAGACCATGACGGCCGTGGATGA
CTTCGAGTCTTTCACTAATTTCATGAACAACGCCGTGGCTGGTGAACACG
AGGACAATAGCGACGCCGCACCCGAAATCGCGGCCGTCCAGGATGGGGAG
GAAGAGAGCAAGCGATGTCAACTTGAGAGTGACAGTAGCGATGGTTGCAA
CGAGGGGGCTGCTGATACCGCGGCAAGAAGGAGACGGAAGTGA
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