mRNA_Ecto-sp13_S_contig19493.6270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19493.6270.1
Unique NamemRNA_Ecto-sp13_S_contig19493.6270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: D7FKY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.790e-26
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQ 159
            MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQ
Sbjct:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQ 53
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: W7U0Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Z4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   16 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 141
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E
Sbjct:    4 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVE 45
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: K8Z8J1_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8J1_NANGC)

HSP 1 Score: 62.4 bits (150), Expect = 2.440e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   16 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 141
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E
Sbjct:   39 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVE 80
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A6G0WTV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTV1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.020e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEE 153
            M+ +     +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+ + E
Sbjct:    1 MAQASLRPFLVKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQKKAE 51
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A485L2A5_9STRA (Aste57867_14693 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2A5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.880e-8
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   28 MLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 141
            +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+
Sbjct:   12 LIKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQ 49
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A1V9ZUD2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUD2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.300e-7
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   10 SKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAE----RRAEAEE 150
            +  A ++ + VPA FV+GAGME+FM+ TGFYD+  + EAE    +RAE EE
Sbjct:    8 ASIAPLLRKLVPACFVIGAGMEVFMVKTGFYDIVTKNEAEIRAIKRAEREE 58
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A836CCA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.480e-7
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   46 ASFVVGAGMELFMLNTGFYDVALRKEAER 132
            A+FV GAGMELFM+ TGFYDVA RKEAER
Sbjct:   15 AAFVTGAGMELFMIKTGFYDVATRKEAER 43
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A482S9C6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9C6_9ARCH)

HSP 1 Score: 50.8 bits (120), Expect = 5.180e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERR 135
            MSS+     + + VP  FV+GAGMELFM+ TGFY +  RKEAERR
Sbjct:    1 MSSNIIFQDLKRIVPICFVLGAGMELFMIKTGFYTIVTRKEAERR 45
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: W4GX85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GX85_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.370e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   28 MLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 141
            +++ VP  FVVGAG+ELFM+ TGFYD+  + EAE RA+
Sbjct:   11 LVKLVPVCFVVGAGVELFMVKTGFYDIVTKNEAEVRAQ 48
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BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Match: A0A067BUH6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BUH6_SAPPC)

HSP 1 Score: 48.5 bits (114), Expect = 3.600e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   40 VPASFVVGAGMELFMLNTGFYDVALRKEAERRA 138
            VPA FV+G GME+FM+ TGFYD+  R EAE RA
Sbjct:   18 VPACFVIGMGMEVFMVKTGFYDIVARNEAEIRA 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19493.6270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FKY9_ECTSI1.790e-26100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U0Z4_9STRA1.030e-1173.81Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8Z8J1_NANGC2.440e-1173.81Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A6G0WTV1_9STRA5.020e-850.98Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L2A5_9STRA9.880e-863.16Aste57867_14693 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZUD2_9STRA4.300e-750.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A836CCA3_9STRA4.480e-782.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482S9C6_9ARCH5.180e-757.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W4GX85_9STRA2.370e-657.89Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067BUH6_SAPPC3.600e-666.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19493contigEcto-sp13_S_contig19493:1877..3281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size159
Hectar predicted targeting categorysignal peptide
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.2447205-CDS-Ecto-sp13_S_contig19493:1876..19691681462988.2447205-CDS-Ecto-sp13_S_contig19493:1876..1969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19493 1877..1969 +
1681462988.2532954-CDS-Ecto-sp13_S_contig19493:3215..32811681462988.2532954-CDS-Ecto-sp13_S_contig19493:3215..3281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19493 3216..3281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19493.6270.1prot_Ecto-sp13_S_contig19493.6270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19493 1877..3281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19493.6270.1

>prot_Ecto-sp13_S_contig19493.6270.1 ID=prot_Ecto-sp13_S_contig19493.6270.1|Name=mRNA_Ecto-sp13_S_contig19493.6270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEE
EYQ
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mRNA from alignment at Ecto-sp13_S_contig19493:1877..3281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19493.6270.1 ID=mRNA_Ecto-sp13_S_contig19493.6270.1|Name=mRNA_Ecto-sp13_S_contig19493.6270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19493:1877..3281+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTACCGGCGTC
TTTCGTTGTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGGTGAGTG
TTAACCTTTGGCAAAATCTCGCCGCATTTCTGGATGACACTGCTTGCTGC
CCGTCATCAGATCCGCGTAGGCGCAACAGCAACAGCACCGAGCTATGGCA
GTGTTACGCCTCCCGCTAGACTCCACCTGCAGTCACCGAGTATAGGTCGT
GTGCAATGGAGGATAATTTTATCAAATTCTGCTGAAATGATGCGTGTTCA
AACTTGGCTGTTGTTCCTATCGTACTGACTCGGCCGATTGGTCAAGCGAG
AGACACGGAGACCTTCGCATTTTGACTTGTAACGGGATTGTACGACAGCA
TCGGCATGTCTTCGTCGCCAGGGCTATACCCGGCGATGCAGCACGACTTT
CCCTTGGGGGGCTTTACCGCGCAACTCACGTCAACAACGGTGTGCAATCC
ATCGACGCCGAGATGTTGCTTTTTTTCTGACTACCGATGAACACTTCTCT
GTGCTGCTTGCTGTTCGTCAAAATGCGATCCTGCCATGGGGGGGCATCAC
ATCCCCTCCTTGTGTTGTTGAAACCCGAGTGAAAACGTACCGACGCAATA
GCCACCTGTGGGTCCCCGGCTGACCCGCCGATGCAACCAGAAAACACGCC
GGAAGGAAAGGTACACAACATTACGTCCATGATGTATGGGACCATACACA
CACGCAATTTTTTTATCCCATATTTGAAAACGAGTGACGTGTCTTCATTG
GTCAGCCGATTAGCACGGTCGGTGCCAGCTATTTGAGACACACAGACGTC
CCTTTCTACATTCTGGGCGCAAGTCTGCACCGGTTGGGGTCACATAGAGG
AAAGATGAACACGGGAATTTGATTTCTTTGCCTTCCCTCCTTTGTCCTCT
GCAAGTGCATGACACGCGCCCTTTCGCGTGTTCGTGGTCGATGTTTCTCA
ACGAAACATACGTAGAACAACACTCATGAAGAATCATTCACGTAGGCGTA
GCATGCGGTTCGCCTCGAATGGTAGGGACAGTCTGTTGCTGGCAGCCTAG
TCAGGGTGTCAGTCCGGTTTAGGTGTGCGCGCTGCAGTTTTCGTTGGACT
TAAATGGCAGCTTCACGTGCCGGCCGCGCGGCCCTCTGTTGTTCATGGAC
TTCCCGGCCAGAAAGATGCTGCTGCTGCTAATCTGCTTGTTTTTTTGCTG
GGCAATTTTCAAACACGCTCCCACTAATGCCGGTTGTCGTTAATGCTGCT
GCTGCTGCTGCTTCTGTCCTTGCCTGCATCTGTGTGTAGGGCTTTTATGA
CGTGGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAAGCAGAGGAGGAAT
ACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19493:1877..3281+

>mRNA_Ecto-sp13_S_contig19493.6270.1 ID=mRNA_Ecto-sp13_S_contig19493.6270.1|Name=mRNA_Ecto-sp13_S_contig19493.6270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19493:1877..3281+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTACCGGCGTC
TTTCGTTGTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGGGCTTTT
ATGACGTGGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAAGCAGAGGAG
GAATACCAG
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