mRNA_Ecto-sp13_S_contig1949.6266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1949.6266.1
Unique NamemRNA_Ecto-sp13_S_contig1949.6266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1949.6266.1 vs. uniprot
Match: A0A6H5L454_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L454_9PHAE)

HSP 1 Score: 366 bits (940), Expect = 1.210e-127
Identity = 186/201 (92.54%), Postives = 190/201 (94.53%), Query Frame = 1 
Query:    1 MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATALAPAKLSCMSAFHDFVLCQHPAEGGGGDGNKRRCRKEQQKRFECLQAHLRPYGFSDEEIVRLLYKTQQQPPPQSKPSVEVSDHGREGDEKAKANENPAEGEDAGGKSANRGDEADVEKGGPKVEVEHEPKQGGGGAR 603
            MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLAT LAPAKLSCMSAFHDFVLCQHPAEGGG DGNKRRC+KEQQKRFECLQAHLRP+GFSDEEI+RLLYKTQQQPPPQSKPSVEVSDH REGDEKAK NE P EGE+AGGK  NRGDE  VEKGGPKVE EHEPKQGGGGAR
Sbjct:    1 MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATVLAPAKLSCMSAFHDFVLCQHPAEGGG-DGNKRRCQKEQQKRFECLQAHLRPHGFSDEEIIRLLYKTQQQPPPQSKPSVEVSDHVREGDEKAKVNEKPGEGENAGGKGVNRGDETVVEKGGPKVEEEHEPKQGGGGAR 200
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BLAST of mRNA_Ecto-sp13_S_contig1949.6266.1 vs. uniprot
Match: D7FI02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI02_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 1.290e-109
Identity = 167/203 (82.27%), Postives = 175/203 (86.21%), Query Frame = 1 
Query:    1 MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATALAPAKLSCMSAFHDFVLCQHPAEGGGGDG--NKRRCRKEQQKRFECLQAHLRPYGFSDEEIVRLLYKTQQQPPPQSKPSVEVSDHGREGDEKAKANENPAEGEDAGGKSANRGDEADVEKGGPKVEVEHEPKQGGGGAR 603
            MSGERAKLV LGLVLAVIARSYI SDVFT G MMSST  FFEDNLC+GR PADRD CKATLATALAPAKLSCMS FHDFV C+ PA+GG      N   C+KE QK FECLQAHL PYGFSDEEI RL+YKTQQQPPP SKPSVEVSDHGREGDEKAKANE P EG++AGGKSANRG+E DVEKGGPKVEVEHEPKQGGGGAR
Sbjct:    1 MSGERAKLVVLGLVLAVIARSYIMSDVFTRGYMMSSTLGFFEDNLCKGRPPADRDGCKATLATALAPAKLSCMSVFHDFVRCRDPADGGXXXXXRNNLPCQKENQKIFECLQAHLAPYGFSDEEIFRLIYKTQQQPPPPSKPSVEVSDHGREGDEKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQGGGGAR 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1949.6266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L454_9PHAE1.210e-12792.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI02_ECTSI1.290e-10982.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1949contigEcto-sp13_S_contig1949:5493..7608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size606
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_006550.1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.090878-CDS-Ecto-sp13_S_contig1949:5492..57681681462988.090878-CDS-Ecto-sp13_S_contig1949:5492..5768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 5493..5768 -
1681462988.1024163-CDS-Ecto-sp13_S_contig1949:6018..62441681462988.1024163-CDS-Ecto-sp13_S_contig1949:6018..6244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 6019..6244 -
1681462988.110523-CDS-Ecto-sp13_S_contig1949:7504..76081681462988.110523-CDS-Ecto-sp13_S_contig1949:7504..7608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 7505..7608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1949.6266.1prot_Ecto-sp13_S_contig1949.6266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1949 5493..7608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1949.6266.1

>prot_Ecto-sp13_S_contig1949.6266.1 ID=prot_Ecto-sp13_S_contig1949.6266.1|Name=mRNA_Ecto-sp13_S_contig1949.6266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQ
PADRDDCKATLATALAPAKLSCMSAFHDFVLCQHPAEGGGGDGNKRRCRK
EQQKRFECLQAHLRPYGFSDEEIVRLLYKTQQQPPPQSKPSVEVSDHGRE
GDEKAKANENPAEGEDAGGKSANRGDEADVEKGGPKVEVEHEPKQGGGGA
R*
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mRNA from alignment at Ecto-sp13_S_contig1949:5493..7608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1949.6266.1 ID=mRNA_Ecto-sp13_S_contig1949.6266.1|Name=mRNA_Ecto-sp13_S_contig1949.6266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:5493..7608- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCGAGAGGGCAAAACTGGTTGGTCTCGGGCTTGTTCTTGCGGT
CATCGCCCGTTCATACATCAAAAGTGATGTCTTCACGCATGGCGTCATGA
TGAGGTGAACCTTTGCGCGGGACTGTTGTTTTTTTTGCTCCGCCAACACG
AGCACACCACACACCACGCGTAGGACACCTGTGCGGCTTTCCTTGTGGTG
TGTTCTGTGATCGATGCTGTCCGAAGGTCTAGTGGAAGAGGTGAGAGTCC
TTGTTCGATGCTCGTACTCCACGAACCACGACGCTTTGAAGTTCGTTTTT
GATGCAAATTGCAGTTCGCGTTTGTTTCCGCTGCTGCTGTAGTTGCGCCG
CATCTCCCACCTCTGTTTTGCGCCAACGCACACGCAGCACGCAGCACGCA
TGCTCCGCCGGTATTGTTGCTCACCTCCCGTCCCTCACAAACCTCCTGGA
CAACGAATGAATATCACGAGCATTATTCAATAATCACGGTGTTGAGGAAC
TAGACGTGACAACACCGACAAATGCATACCGTTACTCCACTAGACGGAAG
AGGGCAAGCCCTAGATATCCCGGAAGTCTTCAGAAGGTGATATTCCGCGT
GATTAGACTACATACGTGTAGCCCGCAAGGACCCCACGGCGGAGTGTGGA
GAACTTCGAAGTTCCAAAATGAATTTCCGAGTTTTATCATCACACTTCGC
CCAAAATTAGAATGTTGTGCCGGGTTGCTGTGAGGTAACGTGAATGGAAA
ACTTTAACTTCCGACTAACGTAGTACACTTTTTTATACCGCTGTGGTTAA
AAAGTGCTGAAAGTGAGGTATTGCTTTGTTTGGAAAACAACCCCCCATGT
ACTACTGTACGCACATAGGCACATTTTGGCATCGGACCTCATACAGTAGT
TGAGGAAACCTTCTTTGCATCCAGAAGTCCCTCAAGGTACAATATGGCAT
AGATGGAAAGCTCGAAAAACTCGTGCCTACTACCTCTCTCGTTCATCCAC
TTGCTCGTGCCCTGCGGTCCTGTCGTCGCTGCCAGCGTTCTTTTGCTACA
TCTCCACTCGTTGAACCGCAACCACGTGCGTTGGTAACAATATTTCATAC
TCAATGCTTCGAGGGGCTCACATGCACGATGACATGGCCAATGCAAAAGC
AAGCCAACGGCGATCTTTGAGCAGATTTCCCCTGCCCCGAGCCCTGCTCA
ATTATTTAGACCGCTTTTGGCTTTCGTTTGCGTGGGCCATGTGAGCCCTT
AAGCACTACTGGAGCGGGGAACCCCACTGCTGTTGCCGCCCCGTCATCTG
GCCCCTGCGTAACAGTAGATCCCGCTTGCCCACCGACCCCTTTTCCAATG
GTTTGTTGTTCCAGTTCTACTGCCCGGTTTTTCGAAGACAACTTGTGTGA
GGGAAGGCAGCCGGCAGACCGGGATGACTGCAAAGCCACGCTGGCGACTG
CGCTTGCTCCTGCGAAGCTCTCCTGTATGTCTGCTTTTCACGACTTCGTC
CTTTGCCAACACCCCGCCGAGGGTGGTGGTGGTGATGGAAACAAGCGGCG
CTGCCGGAAGGAGCAGCAGAAACGCTTCGAGTGCTTGCAGGTGTGCGCGA
GCCCGTTCAGGACGGTGCTTGGTTTGATACCTGTGCGACGAGCGGCTGTG
CTGCAGAAAATGTGCCGGTTATCTTATGCAGGCCAAGAATGACACACACA
CACACACACACACACACACCTCATAACAACGTATCTGTTTCTCCTGTTTT
GGATTGCAACCTCCAAAAGGCGCATCGCTCGCCTCGGCCACAGATGCACA
AAACGTCAACTCTCCTGCTCCCTGGTCCCACCCGTGGCAGGCACACTTGA
GACCCTACGGTTTCAGCGACGAGGAGATCGTTCGGCTCCTCTACAAGACT
CAGCAGCAGCCCCCCCCGCAATCAAAACCGTCCGTGGAGGTTTCAGACCA
CGGCAGGGAAGGAGACGAGAAGGCAAAGGCCAATGAGAATCCGGCCGAGG
GTGAAGACGCGGGGGGCAAGAGTGCGAACCGTGGAGACGAGGCTGATGTA
GAAAAAGGAGGGCCAAAGGTGGAGGTAGAACATGAGCCGAAACAAGGCGG
GGGCGGCGCGCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1949:5493..7608-

>mRNA_Ecto-sp13_S_contig1949.6266.1 ID=mRNA_Ecto-sp13_S_contig1949.6266.1|Name=mRNA_Ecto-sp13_S_contig1949.6266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:5493..7608- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCGAGAGGGCAAAACTGGTTGGTCTCGGGCTTGTTCTTGCGGT
CATCGCCCGTTCATACATCAAAAGTGATGTCTTCACGCATGGCGTCATGA
TGAGTTCTACTGCCCGGTTTTTCGAAGACAACTTGTGTGAGGGAAGGCAG
CCGGCAGACCGGGATGACTGCAAAGCCACGCTGGCGACTGCGCTTGCTCC
TGCGAAGCTCTCCTGTATGTCTGCTTTTCACGACTTCGTCCTTTGCCAAC
ACCCCGCCGAGGGTGGTGGTGGTGATGGAAACAAGCGGCGCTGCCGGAAG
GAGCAGCAGAAACGCTTCGAGTGCTTGCAGGCACACTTGAGACCCTACGG
TTTCAGCGACGAGGAGATCGTTCGGCTCCTCTACAAGACTCAGCAGCAGC
CCCCCCCGCAATCAAAACCGTCCGTGGAGGTTTCAGACCACGGCAGGGAA
GGAGACGAGAAGGCAAAGGCCAATGAGAATCCGGCCGAGGGTGAAGACGC
GGGGGGCAAGAGTGCGAACCGTGGAGACGAGGCTGATGTAGAAAAAGGAG
GGCCAAAGGTGGAGGTAGAACATGAGCCGAAACAAGGCGGGGGCGGCGCG
CGATAG
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