mRNA_Ecto-sp13_S_contig19486.6264.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19486.6264.1
Unique NamemRNA_Ecto-sp13_S_contig19486.6264.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: D7FXR0_ECTSI (PhoD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXR0_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.580e-36
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            +FQTMIRNPEYNQFLDFMCPAARGLAMTPPPGT+SAICPRTILGTWDDHDYGWNDGDSRNEQK
Sbjct:  201 KFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTNSAICPRTILGTWDDHDYGWNDGDSRNEQK 263          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A7S1XRU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRU9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.220e-17
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            R+   +R+P Y  FL++MCP A      PPPGTD  +CPR+I+GTWDDHD GWNDG+SR  Q+
Sbjct:  190 RWLAQLRDPGYAAFLEYMCPEAVAKGYWPPPGTDLTLCPRSIIGTWDDHDSGWNDGNSRLPQR 252          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: UPI000D1D0558 (uncharacterized protein LOC9650319 isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D0558)

HSP 1 Score: 78.2 bits (191), Expect = 2.150e-15
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            + Q  + NP+Y QFL FMCP  R   + PPPG D A+CP+ I GT+ DHDYGW  G+ R  QK
Sbjct:  155 KMQVQLANPDYAQFLAFMCPGHREKGLFPPPGADPAVCPKRIFGTYSDHDYGWRHGNKRLPQK 217          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: UPI000D1C580E (uncharacterized protein LOC112348404 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C580E)

HSP 1 Score: 77.8 bits (190), Expect = 2.930e-15
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            + Q  + NP+Y QFL FMCP  R   + PPPG D A+CP+ I GT+ DHDYGW  G+ R  QK
Sbjct:  155 KMQIQLANPDYAQFLAFMCPGHREKGLFPPPGADPAVCPKRIFGTYSDHDYGWRHGNKRLPQK 217          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A2R6XD72_MARPO (PhoD domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XD72_MARPO)

HSP 1 Score: 77.4 bits (189), Expect = 4.020e-15
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            R Q  + NP+Y QFL +MCP  R   + PP GTD  ICPR I GT+DDHDY W++G+ R  +K
Sbjct:   79 RMQAQLSNPDYAQFLAYMCPGHRAKGLHPPTGTDPTICPRPIFGTYDDHDYSWDNGNKRLPRK 141          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A2R6XD78_MARPO (PhoD domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XD78_MARPO)

HSP 1 Score: 77.4 bits (189), Expect = 4.110e-15
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            R Q  + NP+Y QFL +MCP  R   + PP GTD  ICPR I GT+DDHDY W++G+ R  +K
Sbjct:  204 RMQAQLSNPDYAQFLAYMCPGHRAKGLHPPTGTDPTICPRPIFGTYDDHDYSWDNGNKRLPRK 266          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A1Y1HKK1_KLENI (Alkaline phosphatase D n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKK1_KLENI)

HSP 1 Score: 75.1 bits (183), Expect = 2.680e-14
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            + Q  + +P+Y +FL +MCPA +   +  P G D A+CPRTILGTWDDHDY W DG+ R  +K
Sbjct:  272 KLQAQLEHPDYVRFLRYMCPAWQPHGLFGPDGADPALCPRTILGTWDDHDYNWQDGNRRLPRK 334          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: D8TY44_VOLCA (PhoD domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TY44_VOLCA)

HSP 1 Score: 74.7 bits (182), Expect = 3.650e-14
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARG---LAMT----------PPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            R+   I NP+Y  FLDFMCP   G    A T          PP GTD A+CPR I+G +DDHDYGWN+GD R  +K
Sbjct:  177 RWVHAIHNPDYRAFLDFMCPPTHGSVGAATTSTIGAEPGRFPPTGTDPAVCPRPIMGVYDDHDYGWNNGDRRMPKK 252          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A7R9UHQ3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHQ3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.810e-14
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSR 177
            R+   +++P Y+ FL++MCP A+     PPPGTD+ +CPR I+G WDDHD GWN+ + R
Sbjct:  176 RWLYTLKDPGYSAFLNYMCPNAQAAGYWPPPGTDATLCPRHIIGVWDDHDSGWNNANER 234          
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Match: A0A2V0PCC7_9CHLO (PhoD domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PCC7_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-13
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 RFQTMIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWNDGDSRNEQK 189
            R +  +  PEY  F+DFMC         PP G D+A CPR I+GTWDDHD+GWN+GD R+ +K
Sbjct:  220 RMEGQLGMPEYAAFVDFMCDGPGRGGAYPPNGADAAQCPRPIVGTWDDHDFGWNNGDKRHPRK 282          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19486.6264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR0_ECTSI2.580e-3696.83PhoD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S1XRU9_9STRA6.220e-1755.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI000D1D05582.150e-1552.38uncharacterized protein LOC9650319 isoform X1 n=2 ... [more]
UPI000D1C580E2.930e-1552.38uncharacterized protein LOC112348404 n=1 Tax=Selag... [more]
A0A2R6XD72_MARPO4.020e-1552.38PhoD domain-containing protein n=1 Tax=Marchantia ... [more]
A0A2R6XD78_MARPO4.110e-1552.38PhoD domain-containing protein n=3 Tax=Marchantia ... [more]
A0A1Y1HKK1_KLENI2.680e-1450.79Alkaline phosphatase D n=1 Tax=Klebsormidium niten... [more]
D8TY44_VOLCA3.650e-1450.00PhoD domain-containing protein n=1 Tax=Volvox cart... [more]
A0A7R9UHQ3_9STRA6.810e-1449.15Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A2V0PCC7_9CHLO1.270e-1350.79PhoD domain-containing protein n=1 Tax=Raphidoceli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19486contigEcto-sp13_S_contig19486:2205..3022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score76.6
Seed ortholog evalue4.2e-12
Seed eggNOG ortholog3067.XP_002951405.1
Model size189
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.PhoD-like phosphatase
EggNOG OGs2QTGZ@2759,34ISV@3041,37SBN@33090,COG3540@1
EC3.1.3.1
Cds size177
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.9831538-CDS-Ecto-sp13_S_contig19486:2204..22891681462987.9831538-CDS-Ecto-sp13_S_contig19486:2204..2289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19486 2205..2289 -
1681462987.993213-CDS-Ecto-sp13_S_contig19486:2918..30101681462987.993213-CDS-Ecto-sp13_S_contig19486:2918..3010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19486 2919..3010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.0012982-UTR-Ecto-sp13_S_contig19486:3010..30221681462988.0012982-UTR-Ecto-sp13_S_contig19486:3010..3022Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19486 3011..3022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19486.6264.1prot_Ecto-sp13_S_contig19486.6264.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19486 2205..3010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19486.6264.1

>prot_Ecto-sp13_S_contig19486.6264.1 ID=prot_Ecto-sp13_S_contig19486.6264.1|Name=mRNA_Ecto-sp13_S_contig19486.6264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MIRNPEYNQFLDFMCPAARGLAMTPPPGTDSAICPRTILGTWDDHDYGWN
DGDSRNEQK
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mRNA from alignment at Ecto-sp13_S_contig19486:2205..3022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19486.6264.1 ID=mRNA_Ecto-sp13_S_contig19486.6264.1|Name=mRNA_Ecto-sp13_S_contig19486.6264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19486:2205..3022- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTCAGACGATGATCCGCAACCCCGAGTACAACCAGTTCCTCGATTT CATGTGCCCCGCGGCAAGAGGGCTAGCCATGACCCCTCCCCCCGGCACAG ACAGGTGCGTTTTTACGGAGATCTTCGAAGGTTCTTCGTGTGCATCGATC TCGGTAGATTTGCAAGGTTCTTCGTAGATCTCGGTACAGTCCCTCCATCG TTTGTTTATCTCTGTTTTTCGTTGCATGGCACATGGCGGAAAATATCAGG CACGAACAAAGTAGAAATGGAAATTGCGCCACCGGCCGGAGGACGATTCT TTTTGTACCCGCTGGGGGCAATGAACAACAGTCCCTCCTTCGTTTTTGTT CCCCTGTTATTTTGTTCCGTGACATATCTAGGGATATCCAAATAAACGCA TCAACCAGATGTAAGCGGCGAAAGCGCCGTTTGCACTAGGACTACGGCCG TGGTTTTGTGATCTCTCCTTCTTGTACTCACTGGAACACGGTATGACTAC CCTACGTTTGCTCGTATTCTGAATTTCATTCCATGACGTATGACGGGAAA AACAAGCGCAACAAAATACGCACGGCAAGGCGCCATCTTCTCAAGGACGA TTCTGTGGATCTGTCTGCGAACTCTCTTGCTCAGCATACCAGCCCTTCCA TTTTTTCTATTCTCTGTTTTATCCCATTCCATTGTTGGGGTAAACAAAAA ACCACGTACCAACCACGTCGCTACGGAAAATAGCGCCATCTGCCCGAGGA CGATTCTGGGCACCTGGGACGACCACGACTACGGGTGGAACGACGGCGAT AGTCGCAACGAGCAGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19486:2205..3022-

>mRNA_Ecto-sp13_S_contig19486.6264.1 ID=mRNA_Ecto-sp13_S_contig19486.6264.1|Name=mRNA_Ecto-sp13_S_contig19486.6264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19486:2205..3022- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCGCAACCCCGAGTACAACCAGTTCCTCGATTTCATGTGCCCCGC
GGCAAGAGGGCTAGCCATGACCCCTCCCCCCGGCACAGACAGCGCCATCT
GCCCGAGGACGATTCTGGGCACCTGGGACGACCACGACTACGGGTGGAAC
GACGGCGATAGTCGCAACGAGCAGAAA
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