mRNA_Ecto-sp13_S_contig19484.6263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19484.6263.1
Unique NamemRNA_Ecto-sp13_S_contig19484.6263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A7S3CAL5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAL5_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 5.010e-12
Identity = 24/51 (47.06%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 EVNDLCEIC-GFDTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPCS 159
            ++++LC++C G D++  N+IV+C++CN+ VHQ CYGI+E+P  EW C+ C+
Sbjct:  290 QISELCDVCYGGDSQEGNVIVFCDNCNVAVHQACYGIAEVPKGEWLCNKCA 340
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A7S2X1K1_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2X1K1_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 5.030e-12
Identity = 24/51 (47.06%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 EVNDLCEIC-GFDTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPCS 159
            ++++LC++C G D++  N+IV+C++CN+ VHQ CYGI+E+P  EW C+ C+
Sbjct:  285 QISELCDVCYGGDSQEGNVIVFCDNCNVAVHQACYGIAEVPKGEWLCNKCA 335
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: H8ZEZ9_NEMS1 (Uncharacterized protein n=2 Tax=Nematocida sp. 1 TaxID=1155007 RepID=H8ZEZ9_NEMS1)

HSP 1 Score: 67.8 bits (164), Expect = 6.840e-12
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 EVPEVNDLCEICG-FDTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPC 156
            E  E+ + C ICG  +TE DN +++C+SCN+ VHQ+CYG+  IP   W C PC
Sbjct:   76 ECDELAEECNICGGMETEDDNFLIFCDSCNIAVHQSCYGVPHIPEGSWLCRPC 128
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: UPI000711F3CF (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711F3CF)

HSP 1 Score: 66.6 bits (161), Expect = 1.740e-11
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 DLCEICGFD-TEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPC 156
            ++C+ICG   +EPD+++V+C+ CN+ VHQ CYGIS++P  EW CS C
Sbjct:   11 EVCDICGMGYSEPDDMLVFCDQCNIAVHQGCYGISKLPEGEWLCSVC 57
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A177EH09_9MICR (Bromodomain and PHD finger-containing protein 1 n=1 Tax=Nematocida displodere TaxID=1805483 RepID=A0A177EH09_9MICR)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 EVPEVNDLCEICGF-DTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPC 156
            E  E++D C+ICG  +T  +N +V+C+ CN+GVHQ CYGI  IP   W C PC
Sbjct:   77 EKEELSDACDICGEQETTNENFLVFCDGCNIGVHQGCYGIPNIPEGNWLCRPC 129
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A196SJ27_BLAHN (Jade-1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJ27_BLAHN)

HSP 1 Score: 65.9 bits (159), Expect = 3.280e-11
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 EVPEVNDLCEIC--GFDTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPCS 159
            EV E N++C+IC  G+ +EP +++V+C+ CN+ VHQ CYGI E+P  +W CS C+
Sbjct:  335 EVEEDNEVCDICREGY-SEPGDMLVFCDRCNIAVHQGCYGIKEVPEGDWVCSVCA 388
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A8J6CC31_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CC31_DIALT)

HSP 1 Score: 65.5 bits (158), Expect = 3.680e-11
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   10 EVNDLCEICGFD-TEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPCSA 162
            E++D C ICG D +EP +LIV+C+ CN+ V Q+CY I+++P  +W+C PC A
Sbjct:   27 EIDDSCVICGNDESEPFDLIVFCDGCNVTVCQSCYSIADVPEGDWFCRPCEA 78
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: UPI0020073301 (bromodomain and PHD finger-containing protein 1 n=1 Tax=Nematocida major TaxID=1912982 RepID=UPI0020073301)

HSP 1 Score: 65.1 bits (157), Expect = 6.090e-11
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   10 EVNDLCEICGF-DTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPC 156
            E++D C ICG  +TE D+ +V+C+ CN+ VHQ+CYG+  IP   W C PC
Sbjct:   80 ELSDECNICGEKETEDDDFLVFCDGCNIAVHQSCYGVPNIPEGNWLCRPC 129
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: A0A6J8BJA8_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BJA8_MYTCO)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-10
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 VNDLCEICGFDTEPD-NLIVYCESCNMGVHQTCYGISEIPTKEWYCSPCS 159
            V++ C++CGF  + D N +VYCE CN+ VHQ CY I  +P  +W+C PCS
Sbjct:   78 VDEPCDVCGFKEKDDGNELVYCEECNVLVHQACYNIPVVPDDDWFCRPCS 127
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BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Match: I3EEP1_NEMP3 (Uncharacterized protein n=3 Tax=Nematocida TaxID=586132 RepID=I3EEP1_NEMP3)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-10
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   10 EVNDLCEICGF-DTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCSPC 156
            ++++ C ICG  +TE DN +V+C+ CN+ VHQ+CYG+  IP   W C PC
Sbjct:   79 DLSEECNICGGKETEDDNFLVFCDGCNIAVHQSCYGVPHIPEGSWLCRPC 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19484.6263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3CAL5_9CHLO5.010e-1247.06Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A7S2X1K1_9CHLO5.030e-1247.06Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
H8ZEZ9_NEMS16.840e-1249.06Uncharacterized protein n=2 Tax=Nematocida sp. 1 T... [more]
UPI000711F3CF1.740e-1153.19hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A177EH09_9MICR1.750e-1150.94Bromodomain and PHD finger-containing protein 1 n=... [more]
A0A196SJ27_BLAHN3.280e-1149.09Jade-1 n=1 Tax=Blastocystis sp. subtype 1 (strain ... [more]
A0A8J6CC31_DIALT3.680e-1150.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
UPI00200733016.090e-1150.00bromodomain and PHD finger-containing protein 1 n=... [more]
A0A6J8BJA8_MYTCO1.140e-1050.00Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
I3EEP1_NEMP31.140e-1048.00Uncharacterized protein n=3 Tax=Nematocida TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19484contigEcto-sp13_S_contig19484:2413..3010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score70.9
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog27923.ML21525a-PA
Preferred nameJADE2
Model size162
KEGG koko:K11347,ko:K22155,ko:K22156
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000123,GO:0000209,GO:0000902,GO:0001558,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006915,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0007346,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008219,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010720,GO:0010948,GO:0012501,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030111,GO:0030154,GO:0030178,GO:0030182,GO:0030308,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0036064,GO:0036211,GO:0040007,GO:0040008,GO:0042051,GO:0042058,GO:0042059,GO:0042461,GO:0042462,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043983,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045926,GO:0045930,GO:0045935,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0051865,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060395,GO:0060560,GO:0060828,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090090,GO:0090596,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0140110,GO:1901184,GO:1901185,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902493,GO:1902494,GO:1902680,GO:1902806,GO:1902807,GO:1903506,GO:1903508,GO:1990138,GO:1990234,GO:2000026,GO:2000045,GO:2000134,GO:2001141
Exons2
EggNOG free text desc.histone H4-K12 acetylation
EggNOG OGs38DSU@33154,3BBJP@33208,COG5141@1,KOG0954@2759
EC2.3.2.27
Cds size162
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.9482815-CDS-Ecto-sp13_S_contig19484:2412..24511681462987.9482815-CDS-Ecto-sp13_S_contig19484:2412..2451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19484 2413..2451 -
1681462987.9584324-CDS-Ecto-sp13_S_contig19484:2887..30101681462987.9584324-CDS-Ecto-sp13_S_contig19484:2887..3010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19484 2888..3010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19484.6263.1prot_Ecto-sp13_S_contig19484.6263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19484 2413..3010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19484.6263.1

>prot_Ecto-sp13_S_contig19484.6263.1 ID=prot_Ecto-sp13_S_contig19484.6263.1|Name=mRNA_Ecto-sp13_S_contig19484.6263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
EVPEVNDLCEICGFDTEPDNLIVYCESCNMGVHQTCYGISEIPTKEWYCS
PCSA
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mRNA from alignment at Ecto-sp13_S_contig19484:2413..3010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19484.6263.1 ID=mRNA_Ecto-sp13_S_contig19484.6263.1|Name=mRNA_Ecto-sp13_S_contig19484.6263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19484:2413..3010- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGCCTGAGGTTAACGACCTTTGCGAAATTTGCGGCTTCGACACGGA
ACCAGACAACCTCATCGTGTACTGCGAGTCATGCAACATGGGCGTTCACC
AGACTTGCTACGGCATCTCTGAGGTAGGTTACGAAACACCCGGCAGGCCG
CAGTGTGCTGTAGGTGCGCGCAACCATTCGTTGTTTGCCATGGTCATTTT
TTGGCGGTTGATTCCGTTCTGCTCGTAAGAAGAGTCGCCACTCACACACG
AGAAAAGTGTCACGTAGACTTCACGCCTTTGACCTCTCCGGCATGCTCTA
ACCTTGATATGGTCACCGAATAAGTAAGAGTTTGGACGGGAAGGTGTTAC
ATGGCTAGTTTTGGTGATGCTGGTTGCAGTTTGGATTTCGTCCCGCACTA
TTCAGGCACGATATCAATTCGCGTTGTGTATGCCATGCCAAGGTTGTACA
GCACCAGCGTTTCTCGAGCAACCCATCCCTGTTGACAAGAGGTAGTTGGC
GATGGTTCATCAACCCTCCCGTGCTTTTTCTTTCGTACGGTGAACGTTTT
TGCAACCAGATTCCGACCAAGGAATGGTACTGTAGCCCGTGCTCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19484:2413..3010-

>mRNA_Ecto-sp13_S_contig19484.6263.1 ID=mRNA_Ecto-sp13_S_contig19484.6263.1|Name=mRNA_Ecto-sp13_S_contig19484.6263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19484:2413..3010- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGCCTGAGGTTAACGACCTTTGCGAAATTTGCGGCTTCGACACGGA
ACCAGACAACCTCATCGTGTACTGCGAGTCATGCAACATGGGCGTTCACC
AGACTTGCTACGGCATCTCTGAGATTCCGACCAAGGAATGGTACTGTAGC
CCGTGCTCAGCT
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