mRNA_Ecto-sp13_S_contig19453.6252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: D7FYI6_ECTSI (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI6_ECTSI) HSP 1 Score: 486 bits (1251), Expect = 2.780e-172 Identity = 253/263 (96.20%), Postives = 255/263 (96.96%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQLQGAVGQHGARRQGGDLMSALNAKLGVPP 790
PLQ+ATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQME EDANMLLDAYREVYFSGGVSSVYLWEEEA+GEADNA GAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLS KNPTQATYKVNTTVMLSV PEDEAVGATSLSGNL REKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAA LQSPFAAQLQGAVGQHGARRQGGDLMSALNAKLGVPP
Sbjct: 48 PLQEATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQME---EDANMLLDAYREVYFSGGVSSVYLWEEEADGEADNATGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVGPEDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAARLQSPFAAQLQGAVGQHGARRQGGDLMSALNAKLGVPP 307
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A6H5KTN9_9PHAE (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN9_9PHAE) HSP 1 Score: 266 bits (680), Expect = 1.120e-87 Identity = 138/144 (95.83%), Postives = 139/144 (96.53%), Query Frame = 2
Query: 179 MLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDG 610
MLLDAYREVYFSGGVSSVYLWEEEAEG ADNA GAAGSFAGCFLILKRVGGDGEEGP GAWESSHVVQVVLS KNPTQATYKVNTTVMLSVDP+DEAVGATSLSGNL REKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDG
Sbjct: 1 MLLDAYREVYFSGGVSSVYLWEEEAEGGADNATGAAGSFAGCFLILKRVGGDGEEGPAGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVDPKDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDG 144
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A835YY13_9STRA (F-actin-capping protein subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY13_9STRA) HSP 1 Score: 226 bits (577), Expect = 5.870e-70 Identity = 139/271 (51.29%), Postives = 170/271 (62.73%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGA-----------TSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQLQGAVGQHGARRQGG--DLMSALNAK 775
PLQ+ATDP TGR+YL CEYNRDA SYRSPWSN YDPP+ED + D+LRQ+E DAN LLDAYRE+Y+ GG SSVYLW+ E G+ FAG FLI K EG AWES HV+QV +ATYK+N+T+MLSV TSLSGN+T E+T F++ DHL N+G MIE MEN +R +DG+YVQKTRQI+ SVR + ASA + F +QL A+G HGA+R GG ++ALN K
Sbjct: 45 PLQEATDPVTGRQYLLCEYNRDADSYRSPWSNAYDPPLEDAYELRDQLRQLEI---DANELLDAYRELYYQGGTSSVYLWDLEE--------GSGKGFAGAFLIKKSTA----EGT--AWESIHVIQVDPDVGGGKRATYKLNSTIMLSVQXXXXXXXXXXXXXXXXXXXTSLSGNMTSAAEQTLAFASQDDHLSNIGKMIEKMENDVRMSIDGVYVQKTRQILCSVRRSN-ASAPAQGAAFTSQLNQAIGAHGAKRDGGLAAQIAALNFK 297
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A7S4A8I8_9STRA (F-actin-capping protein subunit beta n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8I8_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.880e-61 Identity = 116/243 (47.74%), Postives = 155/243 (63.79%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTR-GASAACLQSPFAAQLQGAVGQH 727
PL++A +TGR YL C+YNRD S+RSPWSNKYDPPI+DGF P ++LR++E +AN L D YRE+YF GG SSVYLWE + + FAGCFLI K+V G E G W+S HVV+V L N A YK+ TTV+L++D + E+VG T+LSG LTR E+ + H+ N+G +IE E +R +MD LY+QKTR++V+++RS + G S F A L AV +H
Sbjct: 111 PLEEAKCKDTGRAYLLCDYNRDGDSHRSPWSNKYDPPIDDGFVPSEKLRRLEV---EANTLFDCYRELYFEGGTSSVYLWELDGD-----------DFAGCFLIKKKVSGH-EFVTEGCWDSIHVVEVNLE-DNGKAANYKLTTTVILTMDVQKESVGDTNLSGTLTRTAEKRSVIDAEHTHMHNMGTLIEDTETDIRVNMDALYIQKTREVVNNIRSPQTGPSQGAA---FTASLNEAVKRH 334
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: F0YCA6_AURAN (F-actin-capping protein subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA6_AURAN) HSP 1 Score: 203 bits (516), Expect = 4.190e-61 Identity = 118/246 (47.97%), Postives = 152/246 (61.79%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQLQGAVGQHGARR 739
PL++AT E+GR+YL C+YNRD SYRSPWSN Y+PP++DGF P +LR +E +AN L DAYRE+YF GG SSVYLW+ + G FAGCFLI K V G E GAW+S HVV+V + +ATYK+ TTVMLS+D AVG ++LSG+LTR E+ H+ N+G MIE ME +R+ +D LY+QKTR++VSS+R F L AV +HG R
Sbjct: 49 PLEEATCAESGRKYLLCDYNRDGDSYRSPWSNAYEPPLDDGFVPSAKLRALEV---EANALFDAYRELYFEGGTSSVYLWDLD------------GGFAGCFLIKKGVSGH-EFVSTGAWDSIHVVEVAEAGDG--RATYKLTTTVMLSMDVHKPAVGDSNLSGSLTRMAEKACAVDEAHPHVANIGSMIEDMETDIRTYLDSLYIQKTREVVSSIRKLH--KGPTQDKGFTMNLNSAVLKHGKNR 274
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A7S2F5N5_9STRA (F-actin-capping protein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N5_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.680e-60 Identity = 122/251 (48.61%), Postives = 159/251 (63.35%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSP-----FAAQLQGAVGQHGARR 739
PLQ+AT +TGR +L C+YNRD SYRSPWSN+YDPPI+DGFTP + LRQME DAN L D+YR+ Y+ GG SSVYLW+ + FAGCFLI K V G G+W+S HVV+V + K QATYK+ +T++LS+ AVG ++LSG +T++KE T + H N+G MIE ME LRS+MD LY+ KTR+IVSS+R+ R L++P F L AV HGA++
Sbjct: 50 PLQEATCGQTGRPFLLCDYNRDGDSYRSPWSNQYDPPIDDGFTPSEALRQMEI---DANSLYDSYRDQYYEGGTSSVYLWDLD------------DGFAGCFLIKKSVEGHAFVS-AGSWDSIHVVEV--TEKGGGQATYKLTSTLLLSMGVNKAAVGDSNLSGCMTKQKEMTCEVTAVRPHTTNMGTMIEDMEIELRSNMDSLYISKTREIVSSMRNMR------LRAPVQGANFTNSLNQAVLGHGAKK 276
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A6U4L9K2_9STRA (F-actin-capping protein subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L9K2_9STRA) HSP 1 Score: 200 bits (509), Expect = 5.180e-60 Identity = 113/246 (45.93%), Postives = 154/246 (62.60%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQLQGAVGQHGARR 739
PL++ T +G++YL C+YNRD SYRSPWSN+YDPP++DGF P ++LR ME AN L D+YRE+YF GG SSVYLW+ + G FAGCFL+ K + G G+W S HV++V +A+YK+ TTV+LS D + G+T LSG+LTR+K T + + HL N+G +IE ME +RS+M+ LYVQKTR+IV+S+RS A+ ++ F L AV HG R
Sbjct: 50 PLEEGTCSASGKKYLMCDYNRDGDSYRSPWSNQYDPPLDDGFVPSEQLRNMEIQ---ANELFDSYRELYFEGGTSSVYLWDLDGAG-----------FAGCFLVKKSIESTGVV-KAGSWNSIHVIEVS-EQDGGKKASYKLTTTVLLSADVDKPECGSTDLSGSLTRQKARTCEINAEHTHLSNMGEIIEDMETEMRSNMNALYVQKTREIVNSIRSM--ATGPKQEADFVNSLNAAVMAHGDTR 277
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A7S2BI12_9STRA (F-actin-capping protein subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI12_9STRA) HSP 1 Score: 195 bits (495), Expect = 5.550e-58 Identity = 115/247 (46.56%), Postives = 154/247 (62.35%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQLQGAVGQHGARRQ 742
PL++AT T ++YL C+YNRD SYRSPWSN Y+P ++DGF P D LR ME DAN L D+YRE Y+ GGVSSVYLW+ + FAGCFL+ K V G G W+S HVV+V + K +ATYK+ +T+ML++ + +VG ++LSG +T++KE T + H+ N+G MIE ME +RS+MD LY+QKTR+IV+S+R GA F A L AV HGA R+
Sbjct: 48 PLEEATCSVTKKKYLLCDYNRDGDSYRSPWSNAYEPALDDGFQPSDALRAMEV---DANTLYDSYREQYYEGGVSSVYLWDLDT------------GFAGCFLVKKTVQGHAFVSD-GGWDSIHVVEV--TEKGDGKATYKLTSTLMLTMGVQKASVGDSNLSGCMTKQKELTLPVTEVKPHIVNIGSMIEDMEIDMRSNMDNLYIQKTREIVNSMRRVTGAPKQGQN--FTANLNAAVAAHGASRK 274
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: F2UF43_SALR5 (F-actin-capping protein subunit beta n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF43_SALR5) HSP 1 Score: 187 bits (474), Expect = 6.310e-55 Identity = 109/235 (46.38%), Postives = 145/235 (61.70%), Query Frame = 2
Query: 2 PLQKATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSPFAAQL 706
PL+ A D +GR YL C+YNRDA SYRSPWSNKYDPP+EDG P D LR++E AN D YRE+Y+ GGVSSVYLW+ + EG FAG LI K GDG + G ++S HV +V T + ATYK+ +TVML ++ E G L G+LTR+ E+T T S S H+ N+G M+E MEN +R+ +D +Y KT+ +V+S+RS S+ L+ A+L
Sbjct: 46 PLKIAKDEASGRDYLLCDYNRDADSYRSPWSNKYDPPLEDGAVPSDSLRELEIQ---ANQAFDTYRELYYEGGVSSVYLWDLQ-EG-----------FAGVILIKKV--GDGSKKIKGCYDSIHVFEVQ-ETSRGSNATYKLTSTVMLWLETNKETSGMMQLGGSLTRQAEKTLTVSQSSPHIANIGTMVEDMENNMRNTLDQIYFGKTKDVVNSLRSVNPLSSEGLKKDLQAEL 262
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Match: A0A812SN25_SYMMI (F-actin-capping protein subunit beta n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN25_SYMMI) HSP 1 Score: 184 bits (466), Expect = 2.630e-54 Identity = 113/239 (47.28%), Postives = 152/239 (63.60%), Query Frame = 2
Query: 32 GRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEASGEDANMLLDAYREVYFSGGVSSVYLWEEEAEGEADNAAGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSTKNPTQATYKVNTTVMLSVDPEDEAVGATSLSGNLTREKEET-KTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAACLQSP-FAAQLQGAVGQHGARRQ 742
GR +L C+YNRD SYRSPW+NKY PPI+DGF P ++LR ME +AN L D+YRE+YF GG SSVYLW+ DN FAGCFLI K V D G+W+S HVV+VV + P +A+YK+ TTVML++ E VG+T++SG+LTR+ E T + + HL N+G +IE E +RS+++ LY+ KTR+IV+S+RS + +QS A L AV HG R+
Sbjct: 1 GRSFLLCDYNRDGDSYRSPWTNKYFPPIDDGFLPSEKLRAMEM---EANELFDSYRELYFEGGTSSVYLWD------LDN------GFAGCFLIKKNVE-DNRFVNRGSWDSIHVVEVVETA--PKKASYKLTTTVMLTMSVAREEVGSTNMSGSLTRQVESTCDVDNNEKSHLANIGRLIEEQEGDMRSNLNELYILKTREIVNSIRSNKDGP---IQSASHVASLNAAVTGHGMSRK 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19453.6252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19453.6252.1 >prot_Ecto-sp13_S_contig19453.6252.1 ID=prot_Ecto-sp13_S_contig19453.6252.1|Name=mRNA_Ecto-sp13_S_contig19453.6252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp AASKSDRPRDRSTLPEVRVQPRRELLPQPLEQQVRPAHRGRFHSGGSPETback to top mRNA from alignment at Ecto-sp13_S_contig19453:160..3154+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19453.6252.1 ID=mRNA_Ecto-sp13_S_contig19453.6252.1|Name=mRNA_Ecto-sp13_S_contig19453.6252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2995bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19453:160..3154+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19453:160..3154+ >mRNA_Ecto-sp13_S_contig19453.6252.1 ID=mRNA_Ecto-sp13_S_contig19453.6252.1|Name=mRNA_Ecto-sp13_S_contig19453.6252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19453:160..3154+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |