mRNA_Ecto-sp13_S_contig19450.6251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19450.6251.1
Unique NamemRNA_Ecto-sp13_S_contig19450.6251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19450.6251.1 vs. uniprot
Match: D8LAW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.770e-62
Identity = 171/214 (79.91%), Postives = 173/214 (80.84%), Query Frame = 1 
Query:    1 TEDDLQDPDLLGELGEVSGGAEFDAAAPTNDYEGETAGEDASDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MVPAKPALPPRQPAATTASFRGSDSXXXXXXXXAATGEMARLEQELEALRHRALELKKAGDRAGALEAMRAARSADHELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQVR 639
            TEDDLQD DLLGELGEVSGGAEFDAAAPTN  EGET GE   DDXX         XXXXX              MVPAKPALPPRQPA+          XXXXXXXXAATGEMARLEQELE LRHRALELKKAGDRAGALEAMRAARSADHELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQV+
Sbjct:  133 TEDDLQDADLLGELGEVSGGAEFDAAAPTNTAEGETGGEYEDDDXXEAVEPDRESXXXXXEEDMLALGELEEEPMVPAKPALPPRQPASXXXXXXXXXXXXXXXXXXAATGEMARLEQELEILRHRALELKKAGDRAGALEAMRAARSADHELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQVK 346
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BLAST of mRNA_Ecto-sp13_S_contig19450.6251.1 vs. uniprot
Match: A0A6H5JQ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ36_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.370e-48
Identity = 150/232 (64.66%), Postives = 153/232 (65.95%), Query Frame = 1 
Query:    1 TEDDLQDPDLLGELGEVSGGAEFDAAAPTNDYEGETAGEDASDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVPAKPALPPRQPAATTASFRG-------------------SDSXXXXXXXXAATGEMARLEQELEALRHRALELKKAGDRAGALEAMRAARSADHELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQVR 639
            TEDDLQDPDLLGELGEVSGGA+FD AAPTN  EGET GE A DD                              VP                                      SD    XXXXXAATGEMARLEQELE LRHRALELKKAGDRAGALEAMRAARSA+HELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQV+
Sbjct:  133 TEDDLQDPDLLGELGEVSGGADFDVAAPTNTTEGETGGEYADDDDDEAVEPDRESGSEVEEEDMLALGELEEHAVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGGGAXXXXXAATGEMARLEQELEVLRHRALELKKAGDRAGALEAMRAARSANHELAVMRTLETARKVATVRTEYVPPPSDEXXXXXXXXXXXXXXXXXXXXXXKPVSAELVMKQVK 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19450.6251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW7_ECTSI1.770e-6279.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ36_9PHAE1.370e-4864.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19450contigEcto-sp13_S_contig19450:988..3300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size639
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006170.1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.1131232-CDS-Ecto-sp13_S_contig19450:987..11371681462987.1131232-CDS-Ecto-sp13_S_contig19450:987..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19450 988..1137 -
1681462987.128149-CDS-Ecto-sp13_S_contig19450:1867..19631681462987.128149-CDS-Ecto-sp13_S_contig19450:1867..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19450 1868..1963 -
1681462987.1387963-CDS-Ecto-sp13_S_contig19450:2369..25491681462987.1387963-CDS-Ecto-sp13_S_contig19450:2369..2549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19450 2370..2549 -
1681462987.148924-CDS-Ecto-sp13_S_contig19450:3087..33001681462987.148924-CDS-Ecto-sp13_S_contig19450:3087..3300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19450 3088..3300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19450.6251.1prot_Ecto-sp13_S_contig19450.6251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19450 988..3300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19450.6251.1

>prot_Ecto-sp13_S_contig19450.6251.1 ID=prot_Ecto-sp13_S_contig19450.6251.1|Name=mRNA_Ecto-sp13_S_contig19450.6251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
TEDDLQDPDLLGELGEVSGGAEFDAAAPTNDYEGETAGEDASDDGEAVEP
DRESESEVEEEDMLSLGELEEEPMVPAKPALPPRQPAATTASFRGSDSGG
GGGGGGAATGEMARLEQELEALRHRALELKKAGDRAGALEAMRAARSADH
ELAVMRTLETARKVATVRTEYVPPPSDEEEDDDEAPTPSPAGAGAGGGGG
KPVSAELVMKQVR
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mRNA from alignment at Ecto-sp13_S_contig19450:988..3300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19450.6251.1 ID=mRNA_Ecto-sp13_S_contig19450.6251.1|Name=mRNA_Ecto-sp13_S_contig19450.6251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19450:988..3300- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGAGGACGATCTTCAAGATCCGGATCTTCTGGGTGAGCTCGGAGAGGT
CTCCGGGGGGGCGGAGTTCGATGCCGCCGCCCCCACCAACGACTACGAGG
GGGAAACGGCGGGCGAGGACGCGTCCGACGATGGCGAAGCGGTGGAACCG
GACCGGGAGAGTGAAAGCGAGGTCGAAGAGGAGGACATGCTGTCACTTGG
GGAACTCGAAGAGGTAAGGCTTTCGTCGTCGTGGTCGAGGCGTTGCTTTT
TAAATTGTTTTTGGGCGCAGCGTCGCAAGCGGTTGGTAAGGTCAACGTAC
GCCGGTCGTTTCCTCCAGTTCCTCCAGTAATCAAGTGCCCCCTGTCTCCC
TCCCCCACAGACACCAAGTAGTCGCAGACACGCTGTGTCATGATGTGCTG
GGGTTGTCCTGGAAGGTGATTGGAGACCCCCAAGAAGGCGGTGTGGGATA
GATTGCACTCGCAGGCACTGGAGTGTAGGTTCTGGCAATCGTTTGTAAAG
TTTGTGTTGGGAATCAAATCCTGGACGGAGTATATAGCCATTTTTCAAGC
ACCTTTTTACCTGGTATTGGTCTTGTGGTCGGCGATGGTTTCTGCGAGCA
TCGTCTATGGTTTTACGAGCACGAAATTGCGTAGTTCCCAGCGCCTTCGC
CCCTGAGCCACAAATGAAGACGACTTACTGCGTGCATGACTTTGTAAAGT
ACACCCGTATCTCCCTTCCTCCCGATCGAACTCCGCCGCGGCGTGTTCCA
GGAGCCAATGGTACCTGCCAAGCCGGCACTCCCCCCCCGCCAGCCGGCCG
CAACAACCGCCTCCTTCAGAGGCAGCGACAGCGGCGGCGGCGGCGGCGGC
GGCGGGGCGGCGACGGGCGAGATGGCTCGACTGGAACAAGAGCTTGAAGC
CCTTCGCCACAGGGCTCTTGAGCTGAAGAAGGTCAGTGTTGTAGGCCTGT
AGCCGGGTGCGCAGCACACCTTGGCCGAGGAGGCCGTCGGGGAAAGCGGA
TCAAGTTGCCACCCGCGTCGATATTGTTTTCGTCATGGATGCGCGTGAAC
TCCGGGTGTTCCATTCAAGTCTTGCGCTGCCACGACCTATCGATACAGCG
GCAGGTTACCATGTCGCCAGTCGAGCCACGCAAGCGCCCAGCCCTCATGT
TTCGGCAGGCATGCGCAGTCTCTTTCGTCGTCGTCGTGGTCAAAGTTGGG
GCAAGCCCATCTGCGTGCCAGACCCCCCCCTCCCCCTCTTTCGGTTCCTG
ACTCTCCACCACAACCCACGCACATCTATATCTCGTGCTCACCCCCAACA
ACGACCCTTGCCATTTTTTTTTTTTCGTTTTCATCAGGCCGGAGACCGCG
CTGGAGCCCTCGAAGCCATGCGCGCCGCGAGGTCTGCGGACCACGAGCTG
GCCGTGATGCGCACCCTTGAGACAGCCCGCAAGGTACAGATTTCTTGTTT
CTACGCACAAAGAACTACGGAATAAAAACACGTAAAAGGCGGCCGGGAAA
TAAACATAACAAGGGCACGAGGCTAGATGCAGTACAACCCCCGGCCAGCA
ACGTGACGTAGAAGTATGCATAGCATACTACCCCCCCGCAATTCTTGCTG
AGGCAGCCTCCAACCGAGTTCGAGGCTGAAGATACTGATTGCTTTAGGTC
TTGGTTGCCGATGCTGTGCCAGCGCGCTGCTCGTTCACCTAGGAACTACA
GCCCTACAGCAGATTCACGAACCCTTTTTGATGCCTTCTTTTTTACTCAT
GATGGTTGGACGATTCTCCATAAAACACTCACGGGCATGTGCCAGCAAGC
CCTTCCCGTAGGCTTCCAATATCCGGAACAGAATCGCTGTATCCTTGCTC
CATTCCATCGTGAGCAATGTTTTCTATCCCCGCCACGCCAAAAGTTCAAT
CTCCCCGACACACCGCAAATGTTGTTGCCGCCGCGTTCGTCGCCGGCCGC
TCATTTCTCTTCAACCACCCTTCGAAGATTACACTATATCCATCCTCCGG
TCGTGTCGCGAAACGTCAAAATCGGATCGAGGCTCAGTTTCTTTCATTTT
GTTTTCGAGCACGGGTTGCTCTATAGTCTAGGATCTACCGCAGTGTCTTA
ACCCTCTTTTAATGAAAAGTATGAACCTCTGTTTCTTACAGCGAGTGCCC
GTTCTGTCCTTAGGTGGCCACCGTGAGGACGGAGTATGTCCCGCCCCCAT
CTGACGAAGAGGAAGACGACGACGAAGCCCCGACTCCGTCGCCGGCCGGA
GCGGGGGCCGGGGGCGGCGGTGGGAAGCCGGTCTCGGCGGAGCTCGTGAT
GAAGCAGGTTCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19450:988..3300-

>mRNA_Ecto-sp13_S_contig19450.6251.1 ID=mRNA_Ecto-sp13_S_contig19450.6251.1|Name=mRNA_Ecto-sp13_S_contig19450.6251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19450:988..3300- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGAGGACGATCTTCAAGATCCGGATCTTCTGGGTGAGCTCGGAGAGGT
CTCCGGGGGGGCGGAGTTCGATGCCGCCGCCCCCACCAACGACTACGAGG
GGGAAACGGCGGGCGAGGACGCGTCCGACGATGGCGAAGCGGTGGAACCG
GACCGGGAGAGTGAAAGCGAGGTCGAAGAGGAGGACATGCTGTCACTTGG
GGAACTCGAAGAGGAGCCAATGGTACCTGCCAAGCCGGCACTCCCCCCCC
GCCAGCCGGCCGCAACAACCGCCTCCTTCAGAGGCAGCGACAGCGGCGGC
GGCGGCGGCGGCGGCGGGGCGGCGACGGGCGAGATGGCTCGACTGGAACA
AGAGCTTGAAGCCCTTCGCCACAGGGCTCTTGAGCTGAAGAAGGCCGGAG
ACCGCGCTGGAGCCCTCGAAGCCATGCGCGCCGCGAGGTCTGCGGACCAC
GAGCTGGCCGTGATGCGCACCCTTGAGACAGCCCGCAAGGTGGCCACCGT
GAGGACGGAGTATGTCCCGCCCCCATCTGACGAAGAGGAAGACGACGACG
AAGCCCCGACTCCGTCGCCGGCCGGAGCGGGGGCCGGGGGCGGCGGTGGG
AAGCCGGTCTCGGCGGAGCTCGTGATGAAGCAGGTTCGC
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