mRNA_Ecto-sp13_S_contig1945.6250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1945.6250.1
Unique NamemRNA_Ecto-sp13_S_contig1945.6250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1945.6250.1 vs. uniprot
Match: D7FKC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.940e-24
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    7 GSDSQACEGAVALDSGDDGAHAMGSFLMPAQGTVFPVTAQAGGFFDAATSSADKGRLKV 183
            GS+SQACEGA ALDSGDDG HAM SFLMPAQGT FPVTAQAGGFFDAATSSADKGRLKV
Sbjct: 1298 GSNSQACEGAGALDSGDDGGHAMDSFLMPAQGTGFPVTAQAGGFFDAATSSADKGRLKV 1356
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BLAST of mRNA_Ecto-sp13_S_contig1945.6250.1 vs. uniprot
Match: A0A6H5L375_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L375_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.990e-21
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 AAGSDSQACEGAVALDSGDDGAHAMGSFLMPAQGTVFPVTAQAGGFFDAATSSADK 168
            A+GSDSQACEGAVA DSGDDGAHAMGSFLMPAQGT   VTAQAGGFFDAATSSADK
Sbjct: 1364 ASGSDSQACEGAVAQDSGDDGAHAMGSFLMPAQGTGLTVTAQAGGFFDAATSSADK 1419
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1945.6250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKC8_ECTSI3.940e-2491.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L375_9PHAE1.990e-2191.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1945contigEcto-sp13_S_contig1945:13911..14744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.062932-CDS-Ecto-sp13_S_contig1945:13912..139841681462987.062932-CDS-Ecto-sp13_S_contig1945:13912..13984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1945 13913..13984 -
1681462987.0772307-CDS-Ecto-sp13_S_contig1945:14576..147441681462987.0772307-CDS-Ecto-sp13_S_contig1945:14576..14744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1945 14577..14744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1945.6250.1prot_Ecto-sp13_S_contig1945.6250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1945 13913..14744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1945.6250.1

>prot_Ecto-sp13_S_contig1945.6250.1 ID=prot_Ecto-sp13_S_contig1945.6250.1|Name=mRNA_Ecto-sp13_S_contig1945.6250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
AAGSDSQACEGAVALDSGDDGAHAMGSFLMPAQGTVFPVTAQAGGFFDAA
TSSADKGRLKVRDPRLFDPCSMRRRPDSDF
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mRNA from alignment at Ecto-sp13_S_contig1945:13911..14744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1945.6250.1 ID=mRNA_Ecto-sp13_S_contig1945.6250.1|Name=mRNA_Ecto-sp13_S_contig1945.6250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1945:13911..14744- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCCGGTTCGGATTCTCAGGCGTGCGAGGGAGCAGTCGCACTGGATTC
CGGCGACGATGGCGCTCATGCAATGGGCAGCTTCCTGATGCCAGCACAAG
GGACGGTTTTCCCTGTGACAGCACAGGCAGGCGGTTTCTTCGACGCAGCG
ACAAGCTCTGCGGACAAGGTTCGTCATGAGGGTGGAGCACCAAGCATCCT
TAACCAGCAACGGAAGCACCTCAGCGTGTGTCGTTGGAGTTGTTTTGGGC
AGAGCCCCCACGGGTTTTCCAAGAAGGTTTTGCGTTATTTTCGAATGCTT
CGACATATTCATTCGGCGACGAAATCTCACCGAATTCTTCATCGCCAATG
CCGTCCACTTGGAAATCTTCTCGAATCCTCCTCGTGGCTTCCTCGGAAGG
CCAAACTCCCAGCGGGGCAAATACCGGCCAAGTGAAATTCACAATGTGAC
GTACATTCCGCAGTTTCTGTGAAGCAGGTACATACCACGCAAAGCGCTGG
CTCGTGAGTGCGCACGTAGGAGTAAATCGATGGACTTGTGCCTCACCCTG
CAATTGAAGACATGACAACGAAGATGAATTCTTCTGTCTAATCGCAGATC
AAGGTTCTTTAATCAGCAAGACTTCGAAGTACAGGCAGAAACAGTGAGCG
GCCGGGTACGCGTGAGACAGTTGCGTGCCTCTGTTTTCATAGAGAGAGTG
TCTCCTGTACATTCATTGCCGCCGGTGCCGTTCTACGTTCGGGAATTCAT
CGACACACAGGGGCGCTTGAAGGTTAGAGACCCGCGGCTTTTCGATCCCT
GCAGCATGCGTCGGCGACCAGATTCTGATTTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1945:13911..14744-

>mRNA_Ecto-sp13_S_contig1945.6250.1 ID=mRNA_Ecto-sp13_S_contig1945.6250.1|Name=mRNA_Ecto-sp13_S_contig1945.6250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1945:13911..14744- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCCGGTTCGGATTCTCAGGCGTGCGAGGGAGCAGTCGCACTGGATTC
CGGCGACGATGGCGCTCATGCAATGGGCAGCTTCCTGATGCCAGCACAAG
GGACGGTTTTCCCTGTGACAGCACAGGCAGGCGGTTTCTTCGACGCAGCG
ACAAGCTCTGCGGACAAGGGGCGCTTGAAGGTTAGAGACCCGCGGCTTTT
CGATCCCTGCAGCATGCGTCGGCGACCAGATTCTGATTTT
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