mRNA_Ecto-sp13_S_contig19449.6248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19449.6248.1
Unique NamemRNA_Ecto-sp13_S_contig19449.6248.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: D7G7G8_ECTSI (Similar to vacuolar protein sorting 24 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G8_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.890e-49
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    4 ALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 282
            ALI+VTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGL+LTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE
Sbjct:   97 ALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLSLTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 189          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A2R5GMG8_9STRA (Charged multivesicular body protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMG8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.390e-18
Identity = 46/95 (48.42%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 SALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALT-DAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 282
            +A +R+  V++ ST++MA++  LVK+PE+ +NM ++A EMERAGL+EE++ D +  T D EG+D +ADA VD++IAE+T G+L+ A  APT  P+
Sbjct:  105 AAQMRMAQVMQSSTKVMAAMNSLVKMPEVAKNMQEMAMEMERAGLIEEIMDDAMESTFDDEGMDGEADAAVDQIIAELTTGLLDKAPAAPTTAPK 199          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A8J2S9J1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.470e-16
Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 SALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 282
            +A++R  G +KKSTE+M  +  LVK+PELQ+ M ++  EMER+GL+EEVV D L   D + ++ + + +V+KV+ E+   + +G  DAP  +PE
Sbjct:   98 AAMVRAAGCMKKSTEVMRCMNKLVKLPELQKTMMEMQREMERSGLIEEVVGDALDELDGDDVEEETELQVNKVVEELAGDLFKGQTDAPETLPE 191          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A835ZDQ5_9STRA (Vacuolar protein-like protein sorting 24 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.930e-16
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    4 ALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 282
            AL++VTG + KSTE+M  +G LV IPELQ  M  LA EMERAGL EE++ D +  T     D + D EV+KV+AEIT   + GA +AP   P+
Sbjct:   91 ALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNED-EVDQEVEKVLAEITATTMAGAEEAPVGEPQ 182          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A8H7D1K3_9AGAR (Vacuolar sorting protein VPS24 n=2 Tax=Mycena TaxID=41247 RepID=A0A8H7D1K3_9AGAR)

HSP 1 Score: 78.6 bits (192), Expect = 6.870e-16
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    4 ALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVP 279
            AL++VTG ++KSTEIM     L+K+P++ + M +++ EM +AG++EE+V D L L + E L+ +ADAEVDKV+AE+T+G L  A  A T +P
Sbjct:   97 ALVKVTGTLQKSTEIMKLSNSLIKLPQISQTMREMSMEMTKAGIMEEMVGDVLDLDEDEELEEEADAEVDKVLAELTDGKLGLAGSAGTDLP 188          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A177WH41_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WH41_BATDL)

HSP 1 Score: 75.5 bits (184), Expect = 1.060e-14
Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    4 ALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL 246
            AL++VTG ++KS E+M  +  LVK+P++  +M +++ EM +AG++EE+V+D L + D EG++ +AD EVDKVI EIT G+L
Sbjct:   99 ALVKVTGALQKSGEVMKIVNSLVKLPQISASMQEMSMEMMKAGIIEEMVSDTLEMDD-EGIEEEADEEVDKVITEITSGLL 178          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A166VRT7_9AGAM (Snf7-domain-containing protein n=2 Tax=Atheliaceae TaxID=80628 RepID=A0A166VRT7_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-14
Identity = 39/93 (41.94%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 ALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 282
            A+++VTG ++KSTEIM    +LVK+P++ + M +++ EM +AG++EE++ D L + + E ++ +AD EVDKV+AE+T+G L  A    T +P+
Sbjct:   97 AMVKVTGALQKSTEIMKLSNELVKLPQISQAMREMSMEMTKAGIMEEMMDDALDMNEDEEIEEEADGEVDKVLAELTDGKLGQAGAVGTGIPQ 189          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A812WPM4_SYMMI (Chmp3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WPM4_SYMMI)

HSP 1 Score: 72.4 bits (176), Expect = 2.600e-14
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    7 LIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVP 279
            +I+V G I+ S E+M S+ +L+ + E++  M  +A EM RAGL+EE + D     + EGL+ +A+AEVD+V+ EIT G+L  A  APT  P
Sbjct:    1 MIKVQGCIQSSVEVMQSMNELLNMSEVRHIMNDMAREMARAGLIEETINDAFESVEPEGLEGEAEAEVDRVMEEITAGILAPAGTAPTVAP 91          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: E4YAG4_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4YAG4_OIKDI)

HSP 1 Score: 74.3 bits (181), Expect = 2.830e-14
Identity = 40/93 (43.01%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 SALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVP 279
            +A IR+TG I+KST++M S+  LVK+PELQ+ M  ++ EM + G+++E++ D +   D E ++ + DA+V+KV+ EIT+G L     A T+VP
Sbjct:   94 AATIRMTGAIEKSTQVMQSMSKLVKLPELQKTMTAMSKEMMKMGIIDELMDDAMESLDPEDMEEEVDAQVEKVLHEITKGELGSLPSAGTSVP 186          
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Match: A0A1Y1VJ74_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VJ74_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 4.380e-14
Identity = 35/81 (43.21%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   10 IRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEG 252
            I++TG +K +T IM S+  LVK+PE+ + M + ++EM +AG++EE+++D L + D EG++ +A+ EV+KV+ E+T G  EG
Sbjct:   83 IKITGALKDTTAIMQSMNALVKVPEISKTMQEFSSEMTKAGIIEEMISDTLEMNDEEGIEEEAEEEVEKVLFELTNGKKEG 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19449.6248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7G8_ECTSI5.890e-4997.85Similar to vacuolar protein sorting 24 homolog n=2... [more]
A0A2R5GMG8_9STRA9.390e-1848.42Charged multivesicular body protein 3 n=1 Tax=Hond... [more]
A0A8J2S9J1_9STRA2.470e-1642.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZDQ5_9STRA5.930e-1650.54Vacuolar protein-like protein sorting 24 (Fragment... [more]
A0A8H7D1K3_9AGAR6.870e-1647.83Vacuolar sorting protein VPS24 n=2 Tax=Mycena TaxI... [more]
A0A177WH41_BATDL1.060e-1448.15Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A166VRT7_9AGAM1.100e-1441.94Snf7-domain-containing protein n=2 Tax=Atheliaceae... [more]
A0A812WPM4_SYMMI2.600e-1443.96Chmp3 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
E4YAG4_OIKDI2.830e-1443.01Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
A0A1Y1VJ74_9FUNG4.380e-1443.21Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19449contigEcto-sp13_S_contig19449:88..1382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D7G7G8
Preferred nameCHMP3
Model size282
KEGG koko:K12193
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000815,GO:0000920,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008333,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019899,GO:0019941,GO:0022411,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031210,GO:0031410,GO:0031982,GO:0032386,GO:0032465,GO:0032467,GO:0032509,GO:0032510,GO:0032511,GO:0032535,GO:0032879,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0035091,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040013,GO:0040017,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0045787,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048524,GO:0048525,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0050997,GO:0051036,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051291,GO:0051301,GO:0051302,GO:0051493,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051781,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070405,GO:0070507,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090068,GO:0090174,GO:0097352,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901981,GO:1902186,GO:1902187,GO:1902188,GO:1902936,GO:1903649,GO:1903900,GO:1903901,GO:1903902,GO:1904669,GO:1990381,GO:2000641
Exons3
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3229@2759
Cds size282
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.7727826-CDS-Ecto-sp13_S_contig19449:87..1521681462986.7727826-CDS-Ecto-sp13_S_contig19449:87..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19449 88..152 +
1681462986.785518-CDS-Ecto-sp13_S_contig19449:743..8521681462986.785518-CDS-Ecto-sp13_S_contig19449:743..852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19449 744..852 +
1681462986.7939734-CDS-Ecto-sp13_S_contig19449:1274..13821681462986.7939734-CDS-Ecto-sp13_S_contig19449:1274..1382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19449 1275..1382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19449.6248.1prot_Ecto-sp13_S_contig19449.6248.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19449 88..1382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19449.6248.1

>prot_Ecto-sp13_S_contig19449.6248.1 ID=prot_Ecto-sp13_S_contig19449.6248.1|Name=mRNA_Ecto-sp13_S_contig19449.6248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
SALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVV
ADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE
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mRNA from alignment at Ecto-sp13_S_contig19449:88..1382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19449.6248.1 ID=mRNA_Ecto-sp13_S_contig19449.6248.1|Name=mRNA_Ecto-sp13_S_contig19449.6248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1295bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19449:88..1382+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGCTTTGATCAGGGTGACCGGCGTCATCAAGAAGAGCACAGAGATCAT GGCGTCCATCGGAGAGTGAGTGGAACTACCTACCGAGCTCGACGATGCCG AATATGTTGTCCATTCGTGTATGGTTTGTGTTTGCCGACGGCCTTCAATC CGTCTACGCTCTTGATCGTTGATGGCAGCACTCCAGAGCTCGTCACGTTG GTTCTGGCTGTTGCTTTTGTCCAAGTTTGGTCGAACGGTGAACACGGCAC TTCGGTGCCGTGTAGCTAAGCCCAGCTACCTGAACGCTTCGAAGTCGGAA GACACAGAATTGCGGCTCATCGGACACTGGGTAGCTGGACCCCGCAACCA ACTAACTCTCCTGTTCTACGTGCACAACACGATGGCTCTTGTACCACGAT ACCCACCACTACAGCACGAAGGGCGTGTTGTGGTGTTCCTATTGACCCTC CACGGTGTAATGTACAGTACGTACAGGTCATTTTTCGCGCCCCTGGGGTC CTCATGTGCAGTAACGGCTACCTGTAGGTCTTCGCATGGGGTGTGTCCTA GGGTTATTGTTGTGACGTGCCGACTAAATTGAAGCCTGTTCGTATGTGTG CGCTCTTACCGTCTGCGTTTTTTTTTCCCGTTTTTTTCTTGTTTTTTTTT TTGCAGTTTGGTGAAGATTCCTGAGCTACAGGAGAATATGTTCCAGCTGG CAACGGAGATGGAGCGTGCGGGGTTAGTGGAGGAGGTTGTCGCCGATGGA CTTGCCCTTACAGACGTGAGATCGACTTCGAAGGCCCCTTTCTCGTTCGC TGTACACGTATCGTTTTATTTTGTACCATACTCCGCACTATTTTCCAAGC AGAGACTGGAGCGGTTTTTGATGTGAAGACAACAACACTGAAGTATCGTA GTCTAATCTAGAGGCTTGTCAACGGCCACGTCTCTTGAAGGTGCTCTATT CGTCTTGCCTGCTAAGCTACTCGTCACTTGCTTTTTCGTTTGTCCATGTT CGCGCAAGAAAAAAATTGTGCGGAATGTCTTCGAATGTCGAGCAAGTAAA ACGCTCACCAGTAGAGACACACGGTTTGGGTGGGATTGCATCGAGAATGC AGCGCCAATTCCGAGGACAGTACAGCCTGTGTCAATAGTACAATGTCCGG GTTGTGCTGCATTTCGGATTTTTGTTTCGGCATACAGGCTGAGGGGCTCG ATGCCCAGGCAGACGCGGAGGTCGACAAGGTTATCGCCGAGATTACGGAA GGGGTTCTCGAAGGGGCCGTGGATGCGCCGACGGCGGTTCCCGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19449:88..1382+

>mRNA_Ecto-sp13_S_contig19449.6248.1 ID=mRNA_Ecto-sp13_S_contig19449.6248.1|Name=mRNA_Ecto-sp13_S_contig19449.6248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19449:88..1382+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGCTTTGATCAGGGTGACCGGCGTCATCAAGAAGAGCACAGAGATCAT
GGCGTCCATCGGAGATTTGGTGAAGATTCCTGAGCTACAGGAGAATATGT
TCCAGCTGGCAACGGAGATGGAGCGTGCGGGGTTAGTGGAGGAGGTTGTC
GCCGATGGACTTGCCCTTACAGACGCTGAGGGGCTCGATGCCCAGGCAGA
CGCGGAGGTCGACAAGGTTATCGCCGAGATTACGGAAGGGGTTCTCGAAG
GGGCCGTGGATGCGCCGACGGCGGTTCCCGAA
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