mRNA_Ecto-sp13_S_contig19445.6246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19445.6246.1
Unique NamemRNA_Ecto-sp13_S_contig19445.6246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.390e-54
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHTSETKASAEGSAST 315
            GGCV+LLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGL QLLRLSRSERENIRRDACQALKHIGHRGRDRERDH SE++ + EGSAST
Sbjct:  272 GGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLSQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHKSESQETVEGSAST 376
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BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Match: A0A6H5KGE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.590e-50
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:    1 GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERD 270
            GGCV+LLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKH+GHRGR RERD
Sbjct:   23 GGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHMGHRGRARERD 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPB0_ECTSI1.390e-5492.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGE2_9PHAE1.590e-5096.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19445contigEcto-sp13_S_contig19445:2..1349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size577
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.63886-CDS-Ecto-sp13_S_contig19445:1..1381681462986.63886-CDS-Ecto-sp13_S_contig19445:1..138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19445 2..138 +
1681462986.6474156-CDS-Ecto-sp13_S_contig19445:537..6661681462986.6474156-CDS-Ecto-sp13_S_contig19445:537..666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19445 538..666 +
1681462986.6554453-CDS-Ecto-sp13_S_contig19445:1038..10931681462986.6554453-CDS-Ecto-sp13_S_contig19445:1038..1093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19445 1039..1093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.6635706-UTR-Ecto-sp13_S_contig19445:1093..13491681462986.6635706-UTR-Ecto-sp13_S_contig19445:1093..1349Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19445 1094..1349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19445.6246.1prot_Ecto-sp13_S_contig19445.6246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19445 2..1093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19445.6246.1

>prot_Ecto-sp13_S_contig19445.6246.1 ID=prot_Ecto-sp13_S_contig19445.6246.1|Name=mRNA_Ecto-sp13_S_contig19445.6246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLV
DAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHTSETKASAE
GSASTV*
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mRNA from alignment at Ecto-sp13_S_contig19445:2..1349+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19445.6246.1 ID=mRNA_Ecto-sp13_S_contig19445.6246.1|Name=mRNA_Ecto-sp13_S_contig19445.6246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19445:2..1349+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGTGCGTAGAACTCCTGGTTGCTGCCATCGCCCACGCCACAGGCCC
GGAGGCTCCGCCGCAGGAAGAGGCGTGTCCGATCCTAGAGTCCGCCGTCG
CCGCAATCCGGCAAATCACGAAGCTTGAAGGCGCAGGGTGAGCAAAAGCA
CACTCGAACGACCGCTGGGACTAGGTATCTCTGTATCGTTTTCGACCATG
TCTTCTCCTACACAACGATGATAATCTGGAGCAACGGGTAAAAGCGGAAT
TCGTGTTCTCATGCCGGTTCATCTCCCACCTCCGGGTACCTTGAAGCACA
GTAGTCAATCCTGTTTGTCTTCGGCGACGTTTTCATATCTCCAGTCAAGG
TCGTACCATCCCCTTTCTCTTCTCCTTGCACCTTCCTCCCTTGGCCCTCG
CGGGTTCCCCAATAACCATTCCCCCCTCGCTGGGTGCCAAAGGAAACTTG
CTGATACTGATGGATTCTCAAGCCCCCAATCCCCCCCCCAGCCACAATTT
CCCTCCTGATTTCACCCGCTGTGTGTCCTAAACCAGCCGGGTATTGGTGG
ATGCGGGCGGTTTGCCGCAGCTGCTGCGGCTGAGCCGTTCCGAGCGAGAA
AACATCCGGAGGGACGCCTGTCAGGCCCTCAAGCACATCGGTCACAGAGG
CAGAGACAGGGAGAGGTGCGTGAACATAAGTATGTTCATATTTTCACCTT
CTAAGACATTTTCGGTGGTCCCTCCGACCTTTTTCGTTTGTGGCCCAAGC
CTCTTCTCTTGTACAAATCTCTCTCTGAATCTACTTATTGCGCGCATTTC
TCGTATGTGCCACGGGCAACGTCTCTCTCCTGATTTGAGGAAGTTTTTTC
TCTGACAAGGCCTTGGAAATTTCTTCGCCACACTCGACACACGACACAAA
CTTCACAGGACGATTTGGAACACAGCGGATTGCATATGATCGAGTGCTCC
AAACAGAGGCGATTCTTGCCTACCTCGTTTTCCTACGGTGTGTGTTTTTC
CGCGCGTGGAACTGTCGGGTGCGTCTACCGTTCACAGGGACCACACGTCC
GAGACCAAAGCAAGTGCGGAGGGTTCGGCATCTACAGTTTAGCCCCCGCT
CTTTAATCCTCTGGTTTGACTAGCTGGAGATCTTCGTTTCTAGGGCTCAG
AAACGAAAGACTATTTTTTTGAGTGTAGGGGTCCTTTACCGACCTCACGA
ATGGTGCTCAAGAACTTACGTTTTGGTATACAATGTTGAGTATGAAATTT
CCAGCTGCCCAAGTTATTAATGAAGGGCAGGCGCTACGGTATGTGTGTGC
TGGTTGGTGAGGCTGATGCCGAAAATGCGGCCCACTGCTCTGACGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19445:2..1349+

>mRNA_Ecto-sp13_S_contig19445.6246.1 ID=mRNA_Ecto-sp13_S_contig19445.6246.1|Name=mRNA_Ecto-sp13_S_contig19445.6246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19445:2..1349+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGTGCGTAGAACTCCTGGTTGCTGCCATCGCCCACGCCACAGGCCC
GGAGGCTCCGCCGCAGGAAGAGGCGTGTCCGATCCTAGAGTCCGCCGTCG
CCGCAATCCGGCAAATCACGAAGCTTGAAGGCGCAGGCCGGGTATTGGTG
GATGCGGGCGGTTTGCCGCAGCTGCTGCGGCTGAGCCGTTCCGAGCGAGA
AAACATCCGGAGGGACGCCTGTCAGGCCCTCAAGCACATCGGTCACAGAG
GCAGAGACAGGGAGAGGGACCACACGTCCGAGACCAAAGCAAGTGCGGAG
GGTTCGGCATCTACAGTTTAG
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