prot_Ecto-sp13_S_contig19445.6246.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19445.6246.1
Unique Nameprot_Ecto-sp13_S_contig19445.6246.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 8.070e-55
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0 
Query:    1 GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHTSETKASAEGSAST 105
            GGCV+LLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGL QLLRLSRSERENIRRDACQALKHIGHRGRDRERDH SE++ + EGSAST
Sbjct:  272 GGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLSQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHKSESQETVEGSAST 376
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BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Match: A0A6H5KGE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE2_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 8.780e-52
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 
Query:    1 GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERD 90
            GGCV+LLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKH+GHRGR RERD
Sbjct:   23 GGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHMGHRGRARERD 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19445.6246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPB0_ECTSI8.070e-5592.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGE2_9PHAE8.780e-5296.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..99
e-value: 1.5E-8
score: 36.2
IPR000225ArmadilloPFAMPF00514Armcoord: 48..80
e-value: 5.6E-6
score: 26.2
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 26..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19445contigEcto-sp13_S_contig19445:2..1093 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19445.6246.1mRNA_Ecto-sp13_S_contig19445.6246.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19445 2..1349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19445.6246.1 ID=prot_Ecto-sp13_S_contig19445.6246.1|Name=mRNA_Ecto-sp13_S_contig19445.6246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
GGCVELLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLV
DAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHTSETKASAE
GSASTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR000225Armadillo
IPR016024ARM-type_fold