mRNA_Ecto-sp13_S_contig194.6223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig194.6223.1
Unique NamemRNA_Ecto-sp13_S_contig194.6223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.420e-74
Identity = 159/181 (87.85%), Postives = 163/181 (90.06%), Query Frame = 3 
Query:   30 SKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQKVLKSARAAAAASGGTSMDMELLGGEEMSSETGSGGTGSGSG--VTAEGFDDGSEEAEDAMVEXXXXXXXXXXXXXXXXXXXXANARRGVSPKEPLKRVRRHSIAY 566
            S+YADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLR+KGRFVKMSPEQR ALKLKQKVLKSARAAAAASG TSMDMELLGGEEMSSETGS          VTAEGFD+GSEEAEDAMVEXXXXXXXXXXXXXX      A+ARRGVSPKEPLKRVRRHSIAY
Sbjct:  509 SEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGATSMDMELLGGEEMSSETGSXXXXXXXXXXVTAEGFDEGSEEAEDAMVEXXXXXXXXXXXXXX------AHARRGVSPKEPLKRVRRHSIAY 683
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.750e-44
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:   30 SKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQKVLKSARAAAAASGGT 302
            ++YADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLR+KGRFVKMSPEQRAALKLKQK LKSARAAA ASG T
Sbjct:  379 TRYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSARAAAVASGAT 469
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.310e-33
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 3 
Query:    9 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQ 254
            V+LPH+LSKY D+YN+NGRIGIYT QEREAIIARFK KR RRVW+KKIRYNCRKNLADKRLRIKGRFVKM+P QRAAL+L++
Sbjct:  282 VTLPHLLSKYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQR 363
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.080e-32
Identity = 63/80 (78.75%), Postives = 75/80 (93.75%), Query Frame = 3 
Query:    9 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKL 248
            ++LPH+L KYAD+YN++GRIGIYT QEREAIIAR++ KR RRVW+KKIRYNCRKNLADKRLR+KGRFVKM+P QRAAL+L
Sbjct:  272 LTLPHLLHKYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: K8YW04_NANGC (CCT domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC)

HSP 1 Score: 120 bits (300), Expect = 2.360e-28
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:   15 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQ 230
            LPHML+KY+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY+CRKNLADKR+R+KGRFVK+ P++
Sbjct:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A4D9CLM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLM4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.960e-28
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:   15 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQ 230
            LPHML+KY+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY+CRKNLADKR+R+KGRFVK+ P++
Sbjct:  799 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 870
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 115 bits (287), Expect = 8.410e-28
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:   15 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALK 245
            LPH LSKY ++YNKNGRIGIYT  ER AIIA+F  KR RRVW KKIRYNCRKNLAD+R+R+KGRFVK S EQ A LK
Sbjct:  215 LPHSLSKYKEVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.470e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 3 
Query:   15 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQK 257
            LPH LSKY ++YNKNGRIG+YT  ER AIIA+F  KR RRVW KKIRYNCRKNLAD+R+R+KGRFVK S EQ AAL  +QK
Sbjct:  281 LPHSLSKYKEIYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.600e-27
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:    9 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQKVLK 266
            ++LPH L KY ++YN+NGRIGIYT  ER AIIARF +KR RRVW KKIRY CRKNLAD+RLR+KGRFVK S ++  A +L+ +V K
Sbjct:   37 LTLPHSLGKYKEVYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQARVEK 122
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BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.810e-26
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:   15 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRIKGRFVKMSPEQRAALKLKQK 257
            LPH L KY ++YN+NGRIG+YT  ER AIIA+F  KR RRVW KKIRYNCRKNLAD+R+R+KGRFVK S EQ AA+K  +K
Sbjct:  277 LPHSLEKYKEIYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVKAVKK 357
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig194.6223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE1.420e-7487.85CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI8.750e-4493.41CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZBX8_9STRA1.310e-3382.93CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z588_9STRA3.080e-3278.75CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
K8YW04_NANGC2.360e-2877.78CCT domain-containing protein (Fragment) n=2 Tax=N... [more]
A0A4D9CLM4_9STRA4.960e-2877.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1Z2T2_TRICV8.410e-2875.32Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6S9FZK2_9STRA1.470e-2772.84Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2YJJ2_9STRA2.600e-2765.12Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2MN31_9STRA4.810e-2669.14Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig194contigEcto-sp13_S_contig194:28196..30008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.4
Seed ortholog evalue4e-37
Seed eggNOG ortholog2880.D8LD77
Model size569
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Cds size546
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.8425782-UTR-Ecto-sp13_S_contig194:28195..282181681462984.8425782-UTR-Ecto-sp13_S_contig194:28195..28218Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig194 28196..28218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.8538861-CDS-Ecto-sp13_S_contig194:28218..282291681462984.8538861-CDS-Ecto-sp13_S_contig194:28218..28229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 28219..28229 +
1681462984.8655853-CDS-Ecto-sp13_S_contig194:28450..285701681462984.8655853-CDS-Ecto-sp13_S_contig194:28450..28570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 28451..28570 +
1681462984.874326-CDS-Ecto-sp13_S_contig194:28895..290451681462984.874326-CDS-Ecto-sp13_S_contig194:28895..29045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 28896..29045 +
1681462984.8826559-CDS-Ecto-sp13_S_contig194:29743..300081681462984.8826559-CDS-Ecto-sp13_S_contig194:29743..30008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 29744..30008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig194.6223.1prot_Ecto-sp13_S_contig194.6223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig194 28219..30008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig194.6223.1

>prot_Ecto-sp13_S_contig194.6223.1 ID=prot_Ecto-sp13_S_contig194.6223.1|Name=mRNA_Ecto-sp13_S_contig194.6223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKN
LADKRLRIKGRFVKMSPEQRAALKLKQKVLKSARAAAAASGGTSMDMELL
GGEEMSSETGSGGTGSGSGVTAEGFDDGSEEAEDAMVEEEEEEEEEEEEE
EEEEEEEEANARRGVSPKEPLKRVRRHSIAY*
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mRNA from alignment at Ecto-sp13_S_contig194:28196..30008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig194.6223.1 ID=mRNA_Ecto-sp13_S_contig194.6223.1|Name=mRNA_Ecto-sp13_S_contig194.6223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:28196..30008+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCTGCGTCTCCCTGCCGCACATGCTCTCGAAGTGAGTTTTTTTTATT
TTGGGAAGGGGCGGAAGGGGGAATGCTGCGTTTCCGGAGCATTGCGGGTC
AGTTTTGGGTCCGTGTACGTCCTCTCGGTGGTGTCAATAGTTTTGGACGG
GAAGTTCTCACCTAGCCTCATCTCCTTTCTTCACGTTATGCACATCAACA
AAGAATGCAATTGCATCGCTGCCCCTTGTCCCCTTTTTTTTTGTCGTGAT
TGTAGGTATGCCGACATGTACAACAAGAACGGTCGGATCGGCATCTACAC
GCGGCAGGAGCGCGAGGCCATTATCGCACGCTTCAAACGAAAACGGGGGC
GCAGGGTGTGGAAGAAAAAGATTCGGTACGGGACTATCGCCGTTGCTGTA
TGTAACGGTACTGCTCTCGAACTCACGGTTCTGCTGTACGTCGGTCGATG
AGGGCAAGGAAGGAAGCGGTGGGCATTGGTGCTTTGAAAGCCGCCAGTTG
TTAGACAGAACGTGGTGCCTCCGTGCAGACTGTATCTACTACTGTATTTG
TAATTCACACCATCTCCCCATCTTCCTCCCCAATAAAAAGACATCGGGTT
TGGAAACGATAAAACAAGAAGGTTCTTGCACTTTCTGAAACAAGTATATT
TCTAATGTAGTCTCCACGCACATCGATGCCACCCTCCGCCCCCACTTCAG
ATACAACTGCCGCAAGAACTTGGCAGACAAGCGCCTCCGCATTAAGGGGC
GCTTCGTCAAGATGTCGCCGGAGCAGAGGGCCGCCCTCAAGCTCAAGCAG
AAGGTCCTCAAGAGCGCCCGCGCCGCGGCCGCCGCGTCAGGAGGCACCAG
GTGGGAGGGAGGGAGGGTGAGGGGGCTCTCCGGGGGAGGGGGTTCTGGCT
GTTCGTAGAATCTGCGGAGAGATGTGGGTGTTGTGTCGTTTTGTGCGGGC
AAGGGGGCCCGCGTAGCGGGATTTTATGACGTCTTGGCCCTTCGCTAGTT
CAAGGGCCAATCCGGGGAAGGGGGGGTGTACTCGTAGTCGTGCATGCCGT
AGTCGTTAGACCATTGACGTCGCATCCCTACAAATCCGGGGAAGGGAGGT
ATTTTTTTTCCACTTGACGAAGTAGGAAGAAGAATTTTGTGGTAAGAGTA
TAATCTACTTAAAAACCTATTGGCCTAAGGTCGAATGCGTTTTAGAAACG
GAATCTTGTTGTATGTAGCCCGAAGCACATACAAGAAGCTTGGAAAGCGG
GGGAGCCAAATTGTTCCATGTACACTTTTTTCTCGAACCCGTCTCGGGCG
AGAGGATCTACGGCGGTTAGGGGGCGAGGGGATGTTCTGCCTGAAAATGG
GGGGAGCACGCAGTAGGGGCGGCAAGGGAACTCAGGAGGAGGGGCCCGTC
TTGGTGTGCACGGGCAGTAGCTCTTACACGGAAGGAATGCTGTGCGTAGA
AACATGAGCGGTTTAACAGTGAAAAATGTATGTCATCCAACACCCCCCCC
GTCCCCCGTCCCCCGTCCCCCGTCTTCCCGTCCCCTCGTATGTGGCAGCA
TGGACATGGAACTCCTTGGTGGGGAGGAGATGAGCAGCGAGACGGGGAGC
GGGGGGACCGGGAGCGGAAGCGGCGTCACGGCGGAAGGCTTCGACGACGG
TTCGGAAGAAGCGGAGGACGCGATGGTCGAGGAAGAGGAGGAGGAGGAGG
AAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGCCAACGCG
AGGCGGGGAGTGTCGCCGAAGGAACCTCTCAAGCGCGTCCGTCGGCACAG
CATTGCTTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig194:28196..30008+

>mRNA_Ecto-sp13_S_contig194.6223.1 ID=mRNA_Ecto-sp13_S_contig194.6223.1|Name=mRNA_Ecto-sp13_S_contig194.6223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:28196..30008+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCGAAGTATGCCGACATGTACAACAAGAACGGTCGGATCGGCAT
CTACACGCGGCAGGAGCGCGAGGCCATTATCGCACGCTTCAAACGAAAAC
GGGGGCGCAGGGTGTGGAAGAAAAAGATTCGATACAACTGCCGCAAGAAC
TTGGCAGACAAGCGCCTCCGCATTAAGGGGCGCTTCGTCAAGATGTCGCC
GGAGCAGAGGGCCGCCCTCAAGCTCAAGCAGAAGGTCCTCAAGAGCGCCC
GCGCCGCGGCCGCCGCGTCAGGAGGCACCAGCATGGACATGGAACTCCTT
GGTGGGGAGGAGATGAGCAGCGAGACGGGGAGCGGGGGGACCGGGAGCGG
AAGCGGCGTCACGGCGGAAGGCTTCGACGACGGTTCGGAAGAAGCGGAGG
ACGCGATGGTCGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAG
GAGGAGGAAGAAGAGGAGGAGGAGGCCAACGCGAGGCGGGGAGTGTCGCC
GAAGGAACCTCTCAAGCGCGTCCGTCGGCACAGCATTGCTTACTGA
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