mRNA_Ecto-sp13_S_contig194.6220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig194.6220.1
Unique NamemRNA_Ecto-sp13_S_contig194.6220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig194.6220.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.130e-11
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 MRDPVPFSVAVAAATALPAGKKIAHSLGKLNAVEERKFKRQRLAGS 138
            MRDPV FS AVAAA ALPAGK    SLGKLNAVEERKFKRQRLAGS
Sbjct:   82 MRDPVLFSAAVAAAAALPAGK----SLGKLNAVEERKFKRQRLAGS 123
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BLAST of mRNA_Ecto-sp13_S_contig194.6220.1 vs. uniprot
Match: A0A6H5JMU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.320e-10
Identity = 38/46 (82.61%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 MRDPVPFSVAVAAATALPAGKKIAHSLGKLNAVEERKFKRQRLAGS 138
            MRDPVP S AVAAATALPAGK     LGKLNAVEER FKRQRLAGS
Sbjct:   82 MRDPVPSSAAVAAATALPAGKSQI-GLGKLNAVEERNFKRQRLAGS 126
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BLAST of mRNA_Ecto-sp13_S_contig194.6220.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.980e-7
Identity = 39/81 (48.15%), Postives = 40/81 (49.38%), Query Frame = 1 
Query:    1 MRDPVPFSVAVAAATALPAGK-----------------------------------KIAHSLGKLNAVEERKFKRQRLAGS 138
            MRDPVP S AV AATALPAGK                                   K  +SLGKLNAVEER FKRQRLAGS
Sbjct:   65 MRDPVPSSAAVVAATALPAGKSLHARVDAFQAREAFGGPGLEQEGXLDPKSQFHTGKSRNSLGKLNAVEERNFKRQRLAGS 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig194.6220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2T4_9PHAE3.130e-1184.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMU9_9PHAE1.320e-1082.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUI4_9PHAE6.980e-748.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig194contigEcto-sp13_S_contig194:2568..3965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006330.1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.5198574-CDS-Ecto-sp13_S_contig194:2567..26431681462984.5198574-CDS-Ecto-sp13_S_contig194:2567..2643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 2568..2643 -
1681462984.5303369-CDS-Ecto-sp13_S_contig194:3903..39651681462984.5303369-CDS-Ecto-sp13_S_contig194:3903..3965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 3904..3965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig194.6220.1prot_Ecto-sp13_S_contig194.6220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig194 2568..3965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig194.6220.1

>prot_Ecto-sp13_S_contig194.6220.1 ID=prot_Ecto-sp13_S_contig194.6220.1|Name=mRNA_Ecto-sp13_S_contig194.6220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MRDPVPFSVAVAAATALPAGKKIAHSLGKLNAVEERKFKRQRLAGS
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mRNA from alignment at Ecto-sp13_S_contig194:2568..3965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig194.6220.1 ID=mRNA_Ecto-sp13_S_contig194.6220.1|Name=mRNA_Ecto-sp13_S_contig194.6220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:2568..3965- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGATCCAGTCCCATTCTCAGTAGCTGTGGCGGCAGCGACTGCGCT
TCCAGCAGGCAAGTCGTAAACTGGGTACACACACAATCATGTTTCTCAAA
ATTCAAATCGTGCTGTTCGTGGCAGCAGGCTGCGGACATCGCGAGGGGTC
GAAAGCGCACGTTGCATGAGTACACTACAGCAGGCTTTGCCGCGCGTGGC
ACTCGCTCTCGTTGTTGCCTACTGTAAGCAAGGGAGGGGGAGTAACATAT
TTGGAAGCTTGCCACGAGTGCCACCTCTTGTGAGAGGTTGCTGGTGCCCA
AACCTCGATTTTTTTTTATATTTCGCAACGGCTTTTTTTTTCGTCTCCAC
AAACAAACCGCATCCGCCATGCTGCTGCTGCTGCTGCTTCTGCCGCGGCA
GCGGCGACGGCGGCGACGGCGGCGACGGCGGCGACGGCGGCGACGGCGGC
CAGTATCTGTACGTGAGGGTACTACTTGCAGCTCTCGAAAGTACTCATTT
TCACTACACCGTATCGCGATAATTTTGTTTTCCCCATTTGTAGCATTTTC
CATATTTTTCGGTTCAAAGTGCACCGGGTGCAACGAGCTGAGCTGACACA
ACATTGTCTGGTCCAAGACTGCGCGTGTCATGTGCTGGCTTGCCGGTCCT
GATGTTGTGCTCACCGGTGCTACAAGCGCTGTTTGAACGCATCATTCACA
CCTTTATGCACTCCTCACATTGACAGTACCGGACCCAGGCAACACTACAG
CAGCAGTTATCGCTTTGTGTTAGTAATTCATCCTAGTGTATTCTCTGCAT
ATACTGCTGCCGTGATGCGTTGCTGCGGGCCGATCACACTCCCTGCACGA
ATACAAAGCCCCTGTAGGCGCTCTCACAAGTGTAATCAGTCGACCAAATT
TCCACATGCACGTGGTTCGCCATCATCACATTTTGACAGTACCGGACCCA
GGCGATACTACAGTTTTGTTTAGTACTTTATCTTCGTGTGCGTTCTGCAT
AAACTCTGCTACAGTGGTGTCCTGCTGCGGGCCAAAAACACTCCCTGCAC
GAATACAAATGCAGTCGACATCTGTGCTCGCGATCCCCTTCAACTGATCC
AAACATCCATACACCTGCGCCGCATGTTACTTCATCTGCTTATACCTTAA
AAAAATTACTGGCTGTACTGCCGATACACGCATCAACATATACCGGGGGC
AGGATCAGATAGGGTTCGCTGTGCTTTGCAGCGATCTTTTCCTGTCAAAC
TTCGCTGCTGCTGTCGTATGAAAATGTTTCACACGAACTGACGCCTCCAC
CCGGAATCCCAATTTTACACAGGAAAATCGCGCACAGCCTCGGCAAGCTA
AACGCCGTGGAGGAAAGGAAGTTCAAGCGACAGCGGCTGGCCGGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig194:2568..3965-

>mRNA_Ecto-sp13_S_contig194.6220.1 ID=mRNA_Ecto-sp13_S_contig194.6220.1|Name=mRNA_Ecto-sp13_S_contig194.6220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:2568..3965- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGATCCAGTCCCATTCTCAGTAGCTGTGGCGGCAGCGACTGCGCT
TCCAGCAGGCAAGAAAATCGCGCACAGCCTCGGCAAGCTAAACGCCGTGG
AGGAAAGGAAGTTCAAGCGACAGCGGCTGGCCGGGTCG
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