prot_Ecto-sp13_S_contig19302.6192.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig19302.6192.1
Unique Name	prot_Ecto-sp13_S_contig19302.6192.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	173

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Match: D8LCB7_ECTSI (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 4.160e-67
Identity = 156/173 (90.17%), Postives = 156/173 (90.17%), Query Frame = 0

Query:    1 MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNKQRRPTLPTRSLLRCPLAAETDXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEIERMEAEERERIAKRQERIDSVMQ 173
            MGRDSALAAVAL VALLSRQSLGFHIP  SSRRSLQQRSPHSA          PTLPTRSLLR PLAAE DXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKA NKQPQEVSKSVVAEVLGAQAAKEGG TADQVSARKEIERMEAEERERIAKRQERIDSVMQ
Sbjct:    1 MGRDSALAAVALVVALLSRQSLGFHIPATSSRRSLQQRSPHSAXXXXXXXXXXPTLPTRSLLRFPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMEAEERERIAKRQERIDSVMQ 173

[Close]

BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Match: A0A6H5L0S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.870e-50
Identity = 133/173 (76.88%), Postives = 136/173 (78.61%), Query Frame = 0

Query:    1 MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNKQRRPTLPTRSLLRCPLAAETDXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEIERMEAEERERIAKRQERIDSVMQ 173
            MGRDSALAAVA+AVALLSRQ LGFHIP ASSRRSLQQRSPH                              XXXXXXXXXXXXXXXXXX   A+KKAKARGGAGPAVELKKA NKQPQEVSKSVVAEVLGAQAAKEGG+TADQVSARK IERMEAEERERIAKRQERIDSVMQ
Sbjct:    1 MGRDSALAAVAVAVALLSRQGLGFHIPAASSRRSLQQRSPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKASKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGSTADQVSARKAIERMEAEERERIAKRQERIDSVMQ 173

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LCB7_ECTSI	4.160e-67	90.17	All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
A0A6H5L0S3_9PHAE	3.870e-50	76.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 146..166
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..173
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..23 score: 0.624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19302	contig	Ecto-sp13_S_contig19302:307..1960 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19302.6192.1	mRNA_Ecto-sp13_S_contig19302.6192.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig19302 307..1960 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig19302.6192.1 ID=prot_Ecto-sp13_S_contig19302.6192.1|Name=mRNA_Ecto-sp13_S_contig19302.6192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNK
QRRPTLPTRSLLRCPLAAETDDGGGGGGFSSAAAGGEKRSRKAAKKAKAR
GGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEI
ERMEAEERERIAKRQERIDSVMQ