mRNA_Ecto-sp13_S_contig19302.6192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19302.6192.1
Unique NamemRNA_Ecto-sp13_S_contig19302.6192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Match: D8LCB7_ECTSI (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 4.160e-67
Identity = 156/173 (90.17%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:    1 MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNKQRRPTLPTRSLLRCPLAAETDXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEIERMEAEERERIAKRQERIDSVMQ 519
            MGRDSALAAVAL VALLSRQSLGFHIP  SSRRSLQQRSPHSA          PTLPTRSLLR PLAAE DXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKA NKQPQEVSKSVVAEVLGAQAAKEGG TADQVSARKEIERMEAEERERIAKRQERIDSVMQ
Sbjct:    1 MGRDSALAAVALVVALLSRQSLGFHIPATSSRRSLQQRSPHSAXXXXXXXXXXPTLPTRSLLRFPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMEAEERERIAKRQERIDSVMQ 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Match: A0A6H5L0S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.870e-50
Identity = 133/173 (76.88%), Postives = 136/173 (78.61%), Query Frame = 1 
Query:    1 MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNKQRRPTLPTRSLLRCPLAAETDXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEIERMEAEERERIAKRQERIDSVMQ 519
            MGRDSALAAVA+AVALLSRQ LGFHIP ASSRRSLQQRSPH                              XXXXXXXXXXXXXXXXXX   A+KKAKARGGAGPAVELKKA NKQPQEVSKSVVAEVLGAQAAKEGG+TADQVSARK IERMEAEERERIAKRQERIDSVMQ
Sbjct:    1 MGRDSALAAVAVAVALLSRQGLGFHIPAASSRRSLQQRSPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKASKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGSTADQVSARKAIERMEAEERERIAKRQERIDSVMQ 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19302.6192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB7_ECTSI4.160e-6790.17All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L0S3_9PHAE3.870e-5076.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19302contigEcto-sp13_S_contig19302:307..1960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score223.0
Seed ortholog evalue1.1e-55
Seed eggNOG ortholog2880.D8LCB7
Model size519
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
EggNOG free text desc.Protein of unknown function (DUF3464)
EggNOG OGs2AEZ6@1,2RXKE@2759
Ec32 ortholog descriptionProtein of unknown function DUF3464
Ec32 orthologEc-14_005350.1
Cds size519
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.3361819-CDS-Ecto-sp13_S_contig19302:306..3851681462982.3361819-CDS-Ecto-sp13_S_contig19302:306..385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19302 307..385 -
1681462982.3616836-CDS-Ecto-sp13_S_contig19302:1520..19601681462982.3616836-CDS-Ecto-sp13_S_contig19302:1520..1960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19302 1521..1960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19302.6192.1prot_Ecto-sp13_S_contig19302.6192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19302 307..1960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19302.6192.1

>prot_Ecto-sp13_S_contig19302.6192.1 ID=prot_Ecto-sp13_S_contig19302.6192.1|Name=mRNA_Ecto-sp13_S_contig19302.6192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MGRDSALAAVALAVALLSRQSLGFHIPVASSRRSLQQRSPHSAASSPPNK
QRRPTLPTRSLLRCPLAAETDDGGGGGGFSSAAAGGEKRSRKAAKKAKAR
GGAGPAVELKKAVNKQPQEVSKSVVAEVLGAQAAKEGGTTADQVSARKEI
ERMEAEERERIAKRQERIDSVMQ
back to top

mRNA from alignment at Ecto-sp13_S_contig19302:307..1960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19302.6192.1 ID=mRNA_Ecto-sp13_S_contig19302.6192.1|Name=mRNA_Ecto-sp13_S_contig19302.6192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19302:307..1960- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAGAGACTCTGCATTAGCCGCCGTTGCCCTCGCCGTGGCCCTGCT
CTCGCGGCAAAGCCTCGGCTTCCACATCCCGGTGGCTTCCTCTCGTCGAT
CGCTTCAACAACGCTCACCTCATTCCGCCGCATCTTCTCCTCCAAACAAG
CAACGCCGCCCGACGCTACCGACGAGAAGCCTGCTGCGCTGTCCCCTGGC
AGCAGAGACCGACGATGGTGGGGGCGGTGGGGGCTTCAGCTCTGCGGCGG
CGGGCGGAGAGAAGCGGTCTCGCAAGGCCGCTAAGAAGGCGAAGGCGAGA
GGCGGGGCTGGCCCCGCTGTGGAGCTCAAGAAGGCCGTCAACAAGCAGCC
GCAGGAGGTGAGCAAGTCGGTCGTGGCGGAGGTGCTGGGCGCCCAGGCCG
CGAAGGAGGGAGGGACCACCGCGGACCAGGTGTCGGCCAGGTGAGAGAGT
GCTGCTCCTGTGCCTTGTTTGGGACATGGATCACGTTCATACATTTTTGG
GGTAATTTTTAATTTTTGACACGGCAGGTTCAGCAGATACACCTGTGTTG
CCCACGGGGATGTGCGGGGGATTCCAAACCACAGCAGTAGATAGTAGAAA
GTAGATGGTGTAGCAACCACCTTGTGCTTGAAACGCCTGTTTTGCGTTCT
CGTCTCAACCGCTGTCTCCTACTTGAACAATCACGCAGTTGACGTATATC
GCTCTCGCTCTAGCAGATAAAACTCAGATGAGTGTCATGTTGATACATAA
CAGCAGTGGTGTACGTTGGAGGTAGCCTTGATAGTGATACTTTGTCAAAG
AGCCCGCAATTTATCTTTAGGACTCAAGCAATGACGGAATTGGCACCGCA
TCTTGTGCTGCCTTGGCGCGAAAGAAGGGACCCTCGAGAGCGAACAGACC
GCAGGAGAGAGTGTCCCAGTAGAAGCAGTGACAGCGGTGATCGCACACCC
CCTTTGACTGGTTCCCCAACAGCTCGATGACCTCCAACAACCAAGAAGGT
GCTATCACAAAAACCGGATACGATCAAGGCAAGCTCTCGCCGAAAGCTCC
GACGCCACCCTTCTTGGCATCGACAGCCTCTTGACTGTGGAACAGTCGAG
CTTTGAAAACCTGTCTAGCGGGTGTGCGATCACTTGACGGCTGTTATATG
CCGTGCGCTACAACCTACGGCATGAAAGTACCTATGACCCCCCCCCCCCC
CCGGATCTTCTCGTAGAATGGAAACCCCGCGTGCGCCCTTGACGCGGTGG
TCCTGTGGTCTTTGCAGACGGGAGAGGAGTACACCACCCTTCAAGTGGCT
ACTGCTTTCCATCAGTTCTTGGTTCGAAGACGGTCAGGAGGGTGTTGGCT
GCCGCTACTGCTGCTGTTGTTGATTTGGCCCCTTTCCTGCAGCTCCTCTT
TCCTCTTCGTGCTAATGCTGCTGCTGGTGCTCCTGCTGCTGCCGCTCTCT
ACTGATCGGCTCATACTTCCTCCCTGAAGTACATCTCGACTGTCTGTAGT
TGGTTGCAAGTGGGTGCGCGACTTTGAACGCTTGCATGTCGAACCTTGTC
TGCCATTTTGATTTGTATTTTTCAGGAAAGAGATCGAGAGGATGGAAGCG
GAGGAGCGCGAGCGTATCGCCAAGCGCCAGGAGCGCATCGACAGCGTCAT
GCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19302:307..1960-

>mRNA_Ecto-sp13_S_contig19302.6192.1 ID=mRNA_Ecto-sp13_S_contig19302.6192.1|Name=mRNA_Ecto-sp13_S_contig19302.6192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19302:307..1960- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAGAGACTCTGCATTAGCCGCCGTTGCCCTCGCCGTGGCCCTGCT
CTCGCGGCAAAGCCTCGGCTTCCACATCCCGGTGGCTTCCTCTCGTCGAT
CGCTTCAACAACGCTCACCTCATTCCGCCGCATCTTCTCCTCCAAACAAG
CAACGCCGCCCGACGCTACCGACGAGAAGCCTGCTGCGCTGTCCCCTGGC
AGCAGAGACCGACGATGGTGGGGGCGGTGGGGGCTTCAGCTCTGCGGCGG
CGGGCGGAGAGAAGCGGTCTCGCAAGGCCGCTAAGAAGGCGAAGGCGAGA
GGCGGGGCTGGCCCCGCTGTGGAGCTCAAGAAGGCCGTCAACAAGCAGCC
GCAGGAGGTGAGCAAGTCGGTCGTGGCGGAGGTGCTGGGCGCCCAGGCCG
CGAAGGAGGGAGGGACCACCGCGGACCAGGTGTCGGCCAGGAAAGAGATC
GAGAGGATGGAAGCGGAGGAGCGCGAGCGTATCGCCAAGCGCCAGGAGCG
CATCGACAGCGTCATGCAG
back to top