mRNA_Ecto-sp13_S_contig19232.6151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19232.6151.1
Unique NamemRNA_Ecto-sp13_S_contig19232.6151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.110e-52
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 1 
Query:  370 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 759
            ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPT FLDNAAFPASLKEL+LGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML
Sbjct:  666 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELSLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 795
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BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.380e-47
Identity = 122/130 (93.85%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:  370 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 759
            ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPT FLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQ       CEVRAAGSTMSRSRTGML
Sbjct:  629 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQXXXXXXXCEVRAAGSTMSRSRTGML 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF1_ECTSI2.110e-5297.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL40_9PHAE2.380e-4793.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19232contigEcto-sp13_S_contig19232:275..2996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.9
Seed ortholog evalue1.4e-45
Seed eggNOG ortholog2880.D8LHF1
Model size762
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.FNIP Repeat
EggNOG OGs2E9BD@1,2SFQ3@2759
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-13_000330.1
Cds size735
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.8723905-UTR-Ecto-sp13_S_contig19232:274..3011681462978.8723905-UTR-Ecto-sp13_S_contig19232:274..301Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19232 275..301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.887045-CDS-Ecto-sp13_S_contig19232:301..4481681462978.887045-CDS-Ecto-sp13_S_contig19232:301..448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19232 302..448 +
1681462978.8963804-CDS-Ecto-sp13_S_contig19232:1584..18381681462978.8963804-CDS-Ecto-sp13_S_contig19232:1584..1838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19232 1585..1838 +
1681462978.904838-CDS-Ecto-sp13_S_contig19232:2394..25391681462978.904838-CDS-Ecto-sp13_S_contig19232:2394..2539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19232 2395..2539 +
1681462978.91311-CDS-Ecto-sp13_S_contig19232:2807..29961681462978.91311-CDS-Ecto-sp13_S_contig19232:2807..2996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19232 2808..2996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19232.6151.1prot_Ecto-sp13_S_contig19232.6151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19232 302..2996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19232.6151.1

>prot_Ecto-sp13_S_contig19232.6151.1 ID=prot_Ecto-sp13_S_contig19232.6151.1|Name=mRNA_Ecto-sp13_S_contig19232.6151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MMLAEVVFGNAFDREIERTVFPMGLRKIVFGARFNRTVERVVWPAGLEEL
IFGKAFNRPVELASWPPCLRSLRFGRNFDQTLEGVSWPGSLRVVSLGWEF
NHPLGGVKWPDKLEELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLD
NAAFPASLKELTLGDGFNEGLQGVRWPVGLEKLKLGRSYRQRVDTVVWPQ
GIEQLIFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML*
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mRNA from alignment at Ecto-sp13_S_contig19232:275..2996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19232.6151.1 ID=mRNA_Ecto-sp13_S_contig19232.6151.1|Name=mRNA_Ecto-sp13_S_contig19232.6151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2722bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19232:275..2996+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGTGGAGGCAGTGCGGTGGCCAATGATGCTGGCGGAAGTGGTCTT
CGGGAACGCCTTCGACCGAGAAATCGAGAGGACGGTGTTCCCCATGGGTC
TCAGGAAGATTGTTTTCGGAGCCCGGTTTAACCGTACCGTGGAACGGGTC
GTGTGGCCCGCAGGGCTCGAAGAGGTACGTCCTTGGGTACCAGCAGAAGA
TGCGAAACGCCTCTTTTTTATGTAGCCATAGAAGTAAAGAATGGGGATGG
TTTTCGAAACCCGCTTGAAATCATAGCGTGGAACGGGTCGTGTAGGTGAT
TGGGCTCGAAGAGGTACGTACGTCATTGTGCACCAGAGAAGGTACAAACG
CTTTTTTTTATGCAGCCATCTAGGTTCAATATACGGATGGTTTTCAAAAC
CGTACCGTGGAACGGGTCGTGTGGCCGGCATGCCTCGAAGAGATGCGTCC
GTAGGCACCGAGGTACAAAATGGGGATGGTTTTCGAAACCCGCTCTAAAT
CGTAACGTGGAACGGGTCGTGTGACCGGCTGGACTCGAAGAGGTAAGGCC
TTGGGCACCAGAGGATACGAAACGCCTCTTTTTGCACGTCAAAAAATTAC
ATGAGCGGTACATCACCTGTGGTGGTGGGCCTTCATTCGCGCTGGTTGGA
ATCGTAACACGCACATTGCTAACATTGCGGGTCTGCCGAGGGTCCCCGTC
GCGGTAGCCAGACGAACGTTGCTTTGTGCAGAAATACATTTTTTTCTTTA
CATTTTGTGTTTATTGTCGAATTCCTTTGCAATGTAAGTTAGCTTGCCAC
GACGGGAATCGACCGCGTCAGCTATTAGACTAGTACGGGCAGAACAAGGG
AGTACTGGGTAGAGACAACGGAACTGGTCTTGATTTGAAGACAACCACAA
CAACAACAACTACAAGACGGAGGATTTTGAGAGGGTCGGTTGTCTGCTAC
TACAACCAGCGGTTTGACCTTCGGAAACTCGTTCGGCAAGCCTGCACCGT
GTTTCCTCTCAAGACAGATACCCCTCTTGACAAGAAAGCCCCGCGATTTT
TTTACCGCTTGTACCGTCTCGAGAAAGGCCCGTACCTAAACTTGGGAAGT
TCTTTCAAGAAGCCCGTACCTTGTTTGATCTCACCACATCTATTGATAAA
CAACCACGCGATTGCATTACAGCGCGTACCCCCGCGAAAAATTCCCGTAG
CTAACATTCGGGAACTCAACAAGCCCGCACCGTGTTACATCTGAGCATGG
ATACACCTCTGACAAACAGCCCCGCGATTTCAATACGGCACGCACGGTCG
CACCCCGCAGCTGATCTTCGGGAAGGCCTTCAACAGGCCCGTCGAGCTAG
CAAGCTGGCCCCCTTGTCTACGAAGCCTCCGCTTCGGCCGCAACTTCGAC
CAGACCCTGGAAGGCGTTTCGTGGCCGGGGTCTCTCCGCGTTGTCTCCCT
GGGGTGGGAGTTCAACCACCCCCTGGGAGGCGTGAAGTGGCCGGACAAGC
TAGAGGAACTGTCTCTGGTGTGCAGGGTGCTCCCACTTCTCCGGAGAACC
CCCTTGTCCCCGAGGTACGGTAAAGTTAGCACCTCGAGTTTTTGGCGGAG
GGCGGGTTTCGCTACAAATGATCACTTTGTTGCGGTCTTTTTGTTGAGGC
TACGTTACGGACACAAATGATCAGAGTTTCGGGTTTTCTGTGGTGCCCTT
TACTATAATACGTGGTTGGCTTGAAGGCGTCCGCGTCAGTCGTGGACCAG
TACGGATATTAGAACAAAGGGGCTTTTTAAGTGAGAACAACCCCACAACG
GCAACGACAACAATGACAACAACAAACTTTTGCACAACTTTTCGAATCGG
TGGAAGCGTGAAGTGGCCGACAAGCTCTTTTGTTGTAAGTTTGGTTTCGT
ACCTTTCAACCAATGCCGTTGACCTGGTGGCGCAACACCACTCGGTACTG
CATGGAGCATCCCACCCCACAACCTCTCCGCCTATTAACCTCACGCACAC
GGGAATCGACTGCGTCAAGTGTCTGACTAGCACGGACAGAAGAAGGTACT
GGGTAGAGGAAACGTAACGGTTTTTAACGTGGAGACAACAACAACAACAA
CAACAACAACAACAACGCAGGCTGATCAAGCTTCACTTCCAGGGAGGCTT
TCCGACGGCTTTCCTAGACAACGCGGCGTTTCCCGCTTCACTGAAGGAGC
TGACCCTCGGCGACGGTTTCAACGAGGGGCTTCAGGGGGTGCGCTGGCCG
GTGGGGCTTGAGAAGGTGAGAATCGATCGGGTTGAAAGCGTTTGGGTGTT
GTAGGTTGTTGGTTGCTGTGCGTTGTCGATACTGTTGCTGTTGTTCGTGG
TGGTGGTGGTGATGGCGGTGTTGTTGTTGCTGATGCCACTGTTATTGCTG
TTGGTGTTGTTGTTGCTGTTGTTGCTGTTGGTTCTGCTGTTGTCGTTGAT
GTCTCCACAACGAAACCGATGTGGCACCTGCCCTGAATCACACTCTCCTT
CTTCTCCCGCGCGTTCGCCTACCGTTTCGGCAGCTCAAGCTCGGACGCAG
CTACAGGCAGCGAGTGGACACCGTTGTGTGGCCTCAGGGCATCGAACAGC
TTATCTTCGGACAGTTCTTCTTCAGCAACCACGTCCCCCTGCAGAGCGTC
GCGTGGCCCCGGGGGTGCGAGGTCCGAGCCGCGGGCTCCACAATGAGCCG
CTCGCGAACCGGAATGCTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19232:275..2996+

>mRNA_Ecto-sp13_S_contig19232.6151.1 ID=mRNA_Ecto-sp13_S_contig19232.6151.1|Name=mRNA_Ecto-sp13_S_contig19232.6151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19232:275..2996+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCTGGCGGAAGTGGTCTTCGGGAACGCCTTCGACCGAGAAATCGA
GAGGACGGTGTTCCCCATGGGTCTCAGGAAGATTGTTTTCGGAGCCCGGT
TTAACCGTACCGTGGAACGGGTCGTGTGGCCCGCAGGGCTCGAAGAGCTG
ATCTTCGGGAAGGCCTTCAACAGGCCCGTCGAGCTAGCAAGCTGGCCCCC
TTGTCTACGAAGCCTCCGCTTCGGCCGCAACTTCGACCAGACCCTGGAAG
GCGTTTCGTGGCCGGGGTCTCTCCGCGTTGTCTCCCTGGGGTGGGAGTTC
AACCACCCCCTGGGAGGCGTGAAGTGGCCGGACAAGCTAGAGGAACTGTC
TCTGGTGTGCAGGGTGCTCCCACTTCTCCGGAGAACCCCCTTGTCCCCGA
GGCTGATCAAGCTTCACTTCCAGGGAGGCTTTCCGACGGCTTTCCTAGAC
AACGCGGCGTTTCCCGCTTCACTGAAGGAGCTGACCCTCGGCGACGGTTT
CAACGAGGGGCTTCAGGGGGTGCGCTGGCCGGTGGGGCTTGAGAAGCTCA
AGCTCGGACGCAGCTACAGGCAGCGAGTGGACACCGTTGTGTGGCCTCAG
GGCATCGAACAGCTTATCTTCGGACAGTTCTTCTTCAGCAACCACGTCCC
CCTGCAGAGCGTCGCGTGGCCCCGGGGGTGCGAGGTCCGAGCCGCGGGCT
CCACAATGAGCCGCTCGCGAACCGGAATGCTGTAA
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