prot_Ecto-sp13_S_contig19232.6151.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19232.6151.1
Unique Nameprot_Ecto-sp13_S_contig19232.6151.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length245
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.550e-52
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0 
Query:  115 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 244
            ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPT FLDNAAFPASLKEL+LGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML
Sbjct:  666 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELSLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 795
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BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.760e-47
Identity = 122/130 (93.85%), Postives = 122/130 (93.85%), Query Frame = 0 
Query:  115 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML 244
            ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPT FLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQ       CEVRAAGSTMSRSRTGML
Sbjct:  629 ELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQXXXXXXXCEVRAAGSTMSRSRTGML 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19232.6151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF1_ECTSI1.550e-5297.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL40_9PHAE1.760e-4793.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 37..221
e-value: 1.9E-5
score: 25.3
IPR008615FNIPPFAMPF05725FNIPcoord: 12..54
e-value: 7.1E-5
score: 22.9
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 152..211
coord: 6..137
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 152..211
coord: 6..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19232contigEcto-sp13_S_contig19232:302..2996 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19232.6151.1mRNA_Ecto-sp13_S_contig19232.6151.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19232 275..2996 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19232.6151.1 ID=prot_Ecto-sp13_S_contig19232.6151.1|Name=mRNA_Ecto-sp13_S_contig19232.6151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MMLAEVVFGNAFDREIERTVFPMGLRKIVFGARFNRTVERVVWPAGLEEL
IFGKAFNRPVELASWPPCLRSLRFGRNFDQTLEGVSWPGSLRVVSLGWEF
NHPLGGVKWPDKLEELSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTAFLD
NAAFPASLKELTLGDGFNEGLQGVRWPVGLEKLKLGRSYRQRVDTVVWPQ
GIEQLIFGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSRSRTGML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP