mRNA_Ecto-sp13_S_contig19227.6150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19227.6150.1
Unique NamemRNA_Ecto-sp13_S_contig19227.6150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: D7FSU9_ECTSI (Glyceraldehyde-3-phosphate dehydrogenase n=4 Tax=Phaeophyceae TaxID=2870 RepID=D7FSU9_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 2.020e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKAGVKA 916
            SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKAGVKA
Sbjct:  265 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKAGVKA 385
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A0A6YYV3_DICDH (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=A0A0A6YYV3_DICDH)

HSP 1 Score: 223 bits (568), Expect = 5.350e-67
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKAGVKA 916
            +L+GKLTGMAFRVPTPNVSVVDLTCTL+K T+YEEIC AIK+A+ESGPMKG++GYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVK VAWYDNEWGYSQRVMDLM HMA VD K+GV A
Sbjct:  263 ALKGKLTGMAFRVPTPNVSVVDLTCTLEKGTTYEEICGAIKDAAESGPMKGIVGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKVVAWYDNEWGYSQRVMDLMCHMAAVDVKSGVTA 383
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A835ZBB7_9STRA (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.820e-61
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKAGV 910
            SL+GKLTGMAFRVPTPNVSVVDLTCTL+K+TS+EEICAAIK ASE GPMKGV+GY +EPLVSTDFI+D RSSIFDAGAGIMLNPNFVK VAWYDNEWGYSQRV+DLM +MA  D KAGV
Sbjct:  263 SLKGKLTGMAFRVPTPNVSVVDLTCTLEKSTSFEEICAAIKAASE-GPMKGVLGYCDEPLVSTDFITDPRSSIFDAGAGIMLNPNFVKVVAWYDNEWGYSQRVLDLMSYMAKADKKAGV 380
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7S1TP60_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP60_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.230e-56
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 2 
Query:  557 LQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            + GKLTGMAFRVPTP+VSVVDLTC L+K+T+YE+ICA IK  SE G MKG +GY + PLVS DF+SD RSSIFDAGAGIMLNPNFVK VAWYDNEWGYS RVMDLMVHMA +DAK
Sbjct:   64 VNGKLTGMAFRVPTPDVSVVDLTCKLEKSTTYEDICAVIKAKSE-GDMKGFMGYEDTPLVSQDFVSDPRSSIFDAGAGIMLNPNFVKLVAWYDNEWGYSNRVMDLMVHMAKIDAK 177
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7S4P185_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P185_GUITH)

HSP 1 Score: 182 bits (463), Expect = 3.050e-54
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            SLQGKLTGMAFRVPT +VSVVDLTC L KAT+YEEICA IK  SE G MKG +GY +EPLVSTDF SD RSSIFDAGAGIMLNPNFVK VAWYDNEWGYS RV+DLM  +A+VDAK
Sbjct:   35 SLQGKLTGMAFRVPTIDVSVVDLTCKLGKATTYEEICAMIKAKSE-GEMKGFLGYCDEPLVSTDFESDPRSSIFDAGAGIMLNPNFVKLVAWYDNEWGYSCRVVDLMKTVASVDAK 149
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7R9TZC8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TZC8_9VIRI)

HSP 1 Score: 182 bits (461), Expect = 6.310e-54
Identity = 93/117 (79.49%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAKA 904
            SLQGKLTGMAFRVPT +VSVVDLTC L+K T+YEEICA IK  SE G MKGV+GY +EPLVSTDF SDSRSSIFDA AGIMLNP+FVK VAWYDNEWGYS RV+DLM   A VDAKA
Sbjct:   36 SLQGKLTGMAFRVPTIDVSVVDLTCKLEKETTYEEICAHIKALSE-GKMKGVLGYCDEPLVSTDFESDSRSSIFDAQAGIMLNPSFVKLVAWYDNEWGYSSRVVDLMKMCAAVDAKA 151
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7S2HWW7_9STRA (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HWW7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.380e-54
Identity = 95/116 (81.90%), Postives = 102/116 (87.93%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            SLQGKLTGMAFRVPT +VSVVDLTC L+KAT+YEEICA IK  SE G MKGV+GY +EPLVSTDF SDSRSSIFDA AGIMLNPNFVK VAWYDNEWGYS RV+DLM H+A VDAK
Sbjct:  262 SLQGKLTGMAFRVPTIDVSVVDLTCRLEKATTYEEICAVIKAKSE-GEMKGVLGYCDEPLVSTDFESDSRSSIFDADAGIMLNPNFVKLVAWYDNEWGYSGRVVDLMKHVAAVDAK 376
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: B8BQU2_THAPS (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) n=8 Tax=Eukaryota TaxID=2759 RepID=B8BQU2_THAPS)

HSP 1 Score: 188 bits (477), Expect = 1.610e-53
Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            SLQGKLTGMAFRVPT +VSVVDLTC L KAT+YEEICA IK  SE G MKG++GY +EPLVSTDF SDSRSSIFDAGAGIMLNP FVK VAWYDNEWGYS RV+DLM H+A VDAK
Sbjct:  258 SLQGKLTGMAFRVPTIDVSVVDLTCKLGKATTYEEICAVIKAKSE-GEMKGILGYCDEPLVSTDFESDSRSSIFDAGAGIMLNPTFVKLVAWYDNEWGYSGRVVDLMKHVAAVDAK 372
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7S3EJH1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJH1_9RHOD)

HSP 1 Score: 182 bits (463), Expect = 4.610e-53
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            SLQGKLTGMAFRVPT +VSVVDLTC L KAT+YEEICA IK  SE G MKG +GY +EPLVSTDF SD RSSIFDAGAGIMLNPNFVK VAWYDNEWGYS RV+DLM  +A+VDAK
Sbjct:  122 SLQGKLTGMAFRVPTIDVSVVDLTCKLGKATTYEEICAMIKAKSE-GEMKGFLGYCDEPLVSTDFESDPRSSIFDAGAGIMLNPNFVKLVAWYDNEWGYSCRVVDLMKTVASVDAK 236
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BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Match: A0A7S2RX48_9STRA (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RX48_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.030e-52
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 2 
Query:  554 SLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVDAK 901
            +LQGKLTGMAFRVPT +VSVVDLTC L+KAT+YEEICA +K  SE G MKG++GY +EPLVSTDF SDSRSSIFDA AGIMLNPNFVK VAWYDNEWGYS RV+DLM H+A VDAK
Sbjct:  278 ALQGKLTGMAFRVPTIDVSVVDLTCKLEKATTYEEICAHVKAQSE-GDMKGILGYCDEPLVSTDFESDSRSSIFDANAGIMLNPNFVKLVAWYDNEWGYSCRVVDLMKHVAAVDAK 392
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19227.6150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU9_ECTSI2.020e-76100.00Glyceraldehyde-3-phosphate dehydrogenase n=4 Tax=P... [more]
A0A0A6YYV3_DICDH5.350e-6786.78Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=D... [more]
A0A835ZBB7_9STRA9.820e-6184.87Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=T... [more]
A0A7S1TP60_9STRA8.230e-5678.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4P185_GUITH3.050e-5480.17Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7R9TZC8_9VIRI6.310e-5479.49Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S2HWW7_9STRA6.380e-5481.90Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=H... [more]
B8BQU2_THAPS1.610e-5381.03Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
A0A7S3EJH1_9RHOD4.610e-5380.17Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2RX48_9STRA1.030e-5279.31Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19227contigEcto-sp13_S_contig19227:2..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score248.4
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7FSU9
Model size919
KEGG rclassRC00149
KEGG koko:K00134
KEGG ReactionR01061
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.glyceraldehyde-3-phosphate dehydrogenase (NAD(P) ) (phosphorylating) activity
EggNOG OGsCOG0057@1,KOG0657@2759
EC1.2.1.12
Cds size498
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.7979414-UTR-Ecto-sp13_S_contig19227:1..4221681462978.7979414-UTR-Ecto-sp13_S_contig19227:1..422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19227 2..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.830746-CDS-Ecto-sp13_S_contig19227:422..9201681462978.830746-CDS-Ecto-sp13_S_contig19227:422..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19227 423..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19227.6150.1prot_Ecto-sp13_S_contig19227.6150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19227 423..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19227.6150.1

>prot_Ecto-sp13_S_contig19227.6150.1 ID=prot_Ecto-sp13_S_contig19227.6150.1|Name=mRNA_Ecto-sp13_S_contig19227.6150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MEVEMRTSNRIRMYALHPHNTPASPPSLPALHRCRTPQKPQVIPSLQGKL
TGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYT
EEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDL
MVHMATVDAKAGVKA*
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mRNA from alignment at Ecto-sp13_S_contig19227:2..920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19227.6150.1 ID=mRNA_Ecto-sp13_S_contig19227.6150.1|Name=mRNA_Ecto-sp13_S_contig19227.6150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=919bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19227:2..920+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAACAAGGGCCTAGCTGGGCCGTGTCCTGACGCAAGCGTAGAACCAG
CATGTAACTTTTGTCATTGGCGTTTATTCTCACACCCGACGTCAAAAAAG
CAGTACGTCATCGTTTACGGATAATTGTTGAAAATGTTCGAGACACGGCG
TAAATAGCGTTGCCTGTTTTGAATGAGGATTGCTCTGTGGAGATGACGCT
ACAGTCTCGTTTGTTTGGCAAAAAAATCGTCGAGAGTTGAACTCGAAATA
TGCGCCCAGGCACGCGTGCGTGGGTTGCTGAAAACGGGTGTTGAGTTACC
CTTTTTGCCCATACCCCTGGCCATCGAGCGTACGATAACCGGAGACGCTA
GTCAAGTGCCAACCGCATGGATAGAAACTGGCTCGGTAGGGTGGGTTGTG
TTATTCTCTTGAGTGAGCGATATGGAGGTTGAGATGCGAACCTCCAATCG
AATTCGCATGTATGCCCTGCATCCTCACAACACTCCTGCCTCCCCTCCCT
CGCTTCCCGCTCTCCACCGGTGCCGTACCCCGCAAAAACCACAGGTGATC
CCGTCGCTCCAGGGCAAGCTCACCGGCATGGCCTTCCGCGTGCCCACCCC
CAACGTTTCCGTCGTTGACCTGACCTGCACCCTCGACAAGGCCACCTCGT
ACGAGGAGATCTGCGCCGCCATCAAGGAGGCATCCGAATCCGGCCCGATG
AAGGGCGTCATCGGCTACACCGAGGAGCCGCTCGTGTCGACTGACTTCAT
CTCCGACTCGCGCTCGTCGATCTTCGACGCGGGAGCAGGAATCATGCTCA
ACCCCAACTTCGTGAAGTGCGTGGCGTGGTACGACAACGAGTGGGGCTAC
TCGCAGAGGGTGATGGACCTCATGGTCCACATGGCGACGGTCGACGCCAA
GGCCGGCGTGAAGGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19227:2..920+

>mRNA_Ecto-sp13_S_contig19227.6150.1 ID=mRNA_Ecto-sp13_S_contig19227.6150.1|Name=mRNA_Ecto-sp13_S_contig19227.6150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19227:2..920+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTGAGATGCGAACCTCCAATCGAATTCGCATGTATGCCCTGCA
TCCTCACAACACTCCTGCCTCCCCTCCCTCGCTTCCCGCTCTCCACCGGT
GCCGTACCCCGCAAAAACCACAGGTGATCCCGTCGCTCCAGGGCAAGCTC
ACCGGCATGGCCTTCCGCGTGCCCACCCCCAACGTTTCCGTCGTTGACCT
GACCTGCACCCTCGACAAGGCCACCTCGTACGAGGAGATCTGCGCCGCCA
TCAAGGAGGCATCCGAATCCGGCCCGATGAAGGGCGTCATCGGCTACACC
GAGGAGCCGCTCGTGTCGACTGACTTCATCTCCGACTCGCGCTCGTCGAT
CTTCGACGCGGGAGCAGGAATCATGCTCAACCCCAACTTCGTGAAGTGCG
TGGCGTGGTACGACAACGAGTGGGGCTACTCGCAGAGGGTGATGGACCTC
ATGGTCCACATGGCGACGGTCGACGCCAAGGCCGGCGTGAAGGCTTAA
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